Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0478401 Rosa chinensis HOM05D005170 ORTHO05D006985 8.9e-34 146.4 74 100.0
HPP92_019180 Vanilla planifolia HOM05D005170 ORTHO05D006985 2.0e-09 65.5 52 69.2
Os06g0275900 Oryza sativa ssp. japonica HOM05D005170 ORTHO05D006985 3.4e-09 64.7 52 65.4
Ca_06959_v3 Cicer arietinum L. HOM05D005170 ORTHO05D006985 4.5e-09 64.3 52 67.3
CAN.G497.45 Capsicum annuum HOM05D005170 ORTHO05D006985 5.8e-09 63.9 52 65.4
Dinv34895 Davidia involucrata HOM05D005170 ORTHO05D006985 7.6e-09 63.5 52 65.4
HanXRQChr12g0380201 Helianthus annuus HOM05D005170 ORTHO05D006985 1.3e-08 62.8 52 63.5
Rhsim10G0060500 Rhododendron simsii HOM05D005170 ORTHO05D006985 1.3e-08 62.8 52 63.5
Actinidia36275 Actinidia chinensis HOM05D005170 ORTHO05D006985 1.7e-08 62.4 52 63.5
Thhalv10027659m.g Eutrema salsugineum HOM05D005170 ORTHO05D006985 1.7e-08 62.4 52 65.4
TAR629G3016 Trochodendron aralioides HOM05D005170 ORTHO05D006985 1.7e-08 62.4 51 66.7
vmacro05605 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 1.7e-08 62.4 52 63.5
Aa31LG9G16850 Aethionema arabicum HOM05D005170 ORTHO05D006985 2.2e-08 62.0 52 65.4
ECA246G1099 Erigeron canadensis HOM05D005170 ORTHO05D006985 2.2e-08 62.0 52 63.5
Lsat_1_v5_gn_3_95261 Lactuca sativa HOM05D005170 ORTHO05D006985 2.2e-08 62.0 51 64.7
Zm00001eb380550 Zea mays HOM05D005170 ORTHO05D006985 2.2e-08 62.0 52 63.5
MSTRG.2967 Avicennia marina HOM05D005170 ORTHO05D006985 2.9e-08 61.6 52 63.5
Cc07_g04630 Coffea canephora HOM05D005170 ORTHO05D006985 2.9e-08 61.6 52 63.5
Gohir.D07G185600 Gossypium hirsutum HOM05D005170 ORTHO05D006985 2.9e-08 61.6 44 72.7
Gorai.001G206200 Gossypium raimondii HOM05D005170 ORTHO05D006985 2.9e-08 61.6 44 72.7
Medtr7g017500 Medicago truncatula HOM05D005170 ORTHO05D006985 2.9e-08 61.6 52 63.5
Nitab4.5_0002978g0100 Nicotiana tabacum HOM05D005170 ORTHO05D006985 2.9e-08 61.6 52 63.5
Oeu062190.2 Olea europaea HOM05D005170 ORTHO05D006985 2.9e-08 61.6 52 63.5
PSO339G2512 Papaver somniferum HOM05D005170 ORTHO05D006985 2.9e-08 61.6 44 72.7
PGR004G2610 Punica granatum HOM05D005170 ORTHO05D006985 2.9e-08 61.6 52 63.5
Solyc02g089360.4 Solanum lycopersicum HOM05D005170 ORTHO05D006985 2.9e-08 61.6 52 63.5
Sopen02g034140 Solanum pennellii HOM05D005170 ORTHO05D006985 2.9e-08 61.6 52 63.5
PGSC0003DMG400001473 Solanum tuberosum HOM05D005170 ORTHO05D006985 2.9e-08 61.6 52 63.5
SGA_v2.0_scaffold52G19060 Striga asiatica HOM05D005170 ORTHO05D006985 2.9e-08 61.6 52 63.5
TPR.G3272 Trifolium pratense HOM05D005170 ORTHO05D006985 2.9e-08 61.6 52 63.5
CSS0017694 Camellia sinensis var. sinensis HOM05D005170 ORTHO05D006985 3.8e-08 61.2 52 61.5
CSS0024263 Camellia sinensis var. sinensis HOM05D005170 ORTHO05D006985 3.8e-08 61.2 52 61.5
Migut.H00575 Erythranthe guttata HOM05D005170 ORTHO05D006985 3.8e-08 61.2 52 63.5
Eucgr.I02082 Eucalyptus grandis HOM05D005170 ORTHO05D006985 3.8e-08 61.2 44 72.7
AL7G51600 Arabidopsis lyrata HOM05D005170 ORTHO05D006985 4.9e-08 60.8 52 63.5
AT5G38840 Arabidopsis thaliana HOM05D005170 ORTHO05D006985 4.9e-08 60.8 52 63.5
Lj4A126T71 Lonicera japonica HOM05D005170 ORTHO05D006985 4.9e-08 60.8 44 70.5
TWI34G1112 Tripterygium wilfordii HOM05D005170 ORTHO05D006985 4.9e-08 60.8 44 70.5
CANSAT64G0674 Cannabis sativa HOM05D005170 ORTHO05D006985 6.5e-08 60.5 52 61.5
Cpa.g.sc14.254 Carica papaya HOM05D005170 ORTHO05D006985 6.5e-08 60.5 44 70.5
Cfa007711 Carpinus fangiana HOM05D005170 ORTHO05D006985 6.5e-08 60.5 43 72.1
AUR62009453 Chenopodium quinoa HOM05D005170 ORTHO05D006985 6.5e-08 60.5 52 65.4
AUR62023134 Chenopodium quinoa HOM05D005170 ORTHO05D006985 6.5e-08 60.5 52 65.4
ClCG07G016130 Citrullus lanatus HOM05D005170 ORTHO05D006985 6.5e-08 60.5 44 70.5
COL.COLO4_00229 Corchorus olitorius HOM05D005170 ORTHO05D006985 6.5e-08 60.5 44 70.5
MELO3C018906.2 Cucumis melo HOM05D005170 ORTHO05D006985 6.5e-08 60.5 44 70.5
CsaV3_4G009930 Cucumis sativus L. HOM05D005170 ORTHO05D006985 6.5e-08 60.5 44 70.5
Hma1.2p1_2186F.1_g316390 Hydrangea macrophylla HOM05D005170 ORTHO05D006985 6.5e-08 60.5 52 61.5
Hma1.2p1_2186F.1_g316400 Hydrangea macrophylla HOM05D005170 ORTHO05D006985 6.5e-08 60.5 52 61.5
Nn4g23569 Nelumbo nucifera HOM05D005170 ORTHO05D006985 6.5e-08 60.5 51 64.7
Nitab4.5_0002171g0080 Nicotiana tabacum HOM05D005170 ORTHO05D006985 6.5e-08 60.5 53 62.3
Potri.004G111500 Populus trichocarpa HOM05D005170 ORTHO05D006985 6.5e-08 60.5 44 70.5
Sabra04G0072900 Salix brachista HOM05D005170 ORTHO05D006985 6.5e-08 60.5 44 70.5
Sed0018763 Sechium edule HOM05D005170 ORTHO05D006985 6.5e-08 60.5 43 72.1
Thecc.04G110100 Theobroma cacao HOM05D005170 ORTHO05D006985 6.5e-08 60.5 44 70.5
vmacro17105 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 6.5e-08 60.5 57 63.2
vmacro23470 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 6.5e-08 60.5 57 63.2
BcaB06g27252 Brassica carinata HOM05D005170 ORTHO05D006985 8.4e-08 60.1 52 61.5
BcaC02g09673 Brassica carinata HOM05D005170 ORTHO05D006985 8.4e-08 60.1 52 61.5
A04p11710 Brassica napus HOM05D005170 ORTHO05D006985 8.4e-08 60.1 52 61.5
C04p45420 Brassica napus HOM05D005170 ORTHO05D006985 8.4e-08 60.1 52 61.5
BolC4t26124H Brassica oleracea HOM05D005170 ORTHO05D006985 8.4e-08 60.1 52 61.5
BraA04t16838Z Brassica rapa HOM05D005170 ORTHO05D006985 8.4e-08 60.1 52 61.5
FvH4_6g46110 Fragaria vesca HOM05D005170 ORTHO05D006985 8.4e-08 60.1 41 75.6
FAN02G2580 Fragaria x ananassa HOM05D005170 ORTHO05D006985 8.4e-08 60.1 41 75.6
FAN05G5078 Fragaria x ananassa HOM05D005170 ORTHO05D006985 8.4e-08 60.1 41 75.6
FAN09G2425 Fragaria x ananassa HOM05D005170 ORTHO05D006985 8.4e-08 60.1 41 75.6
FAN14G1739 Fragaria x ananassa HOM05D005170 ORTHO05D006985 8.4e-08 60.1 41 75.6
Glyma.08G253900 Glycine max HOM05D005170 ORTHO05D006985 8.4e-08 60.1 52 61.5
Manes.01G104800 Manihot esculenta HOM05D005170 ORTHO05D006985 8.4e-08 60.1 44 70.5
Pp3c14_10960 Physcomitrium patens HOM05D005170 ORTHO05D006985 8.4e-08 60.1 47 68.1
RcHm_v2.0_Chr2g0164441 Rosa chinensis HOM05D005170 ORTHO05D006985 8.4e-08 60.1 41 75.6
RcHm_v2.0_Chr2g0164481 Rosa chinensis HOM05D005170 ORTHO05D006985 8.4e-08 60.1 41 75.6
GSVIVG01036517001 Vitis vinifera HOM05D005170 ORTHO05D006985 8.4e-08 60.1 44 68.2
Aqoxy3G03767 Aquilegia oxysepala HOM05D005170 ORTHO05D006985 1.1e-07 59.7 52 63.5
Carub.0007s3703 Capsella rubella HOM05D005170 ORTHO05D006985 1.1e-07 59.7 52 61.5
CARHR263780 Cardamine hirsuta HOM05D005170 ORTHO05D006985 1.1e-07 59.7 52 61.5
Gohir.A07G178500 Gossypium hirsutum HOM05D005170 ORTHO05D006985 1.1e-07 59.7 44 70.5
Hund16252 Selenicereus undatus HOM05D005170 ORTHO05D006985 1.1e-07 59.7 52 63.5
PSO063G4379 Papaver somniferum HOM05D005170 ORTHO05D006985 1.4e-07 59.3 50 64.0
PSO782G1791 Papaver somniferum HOM05D005170 ORTHO05D006985 1.4e-07 59.3 50 64.0
Sc11g0008940 Simmondsia chinensis HOM05D005170 ORTHO05D006985 1.4e-07 59.3 52 63.5
THA.LOC104805534 Tarenaya hassleriana HOM05D005170 ORTHO05D006985 1.4e-07 59.3 52 63.5
arahy.Tifrunner.gnm1.ann1.66GFWV Arachis hypogaea HOM05D005170 ORTHO05D006985 1.9e-07 58.9 52 59.6
CDE02G1515 Ceratophyllum demersum HOM05D005170 ORTHO05D006985 1.9e-07 58.9 51 62.7
DCAR_007542 Daucus carota HOM05D005170 ORTHO05D006985 1.9e-07 58.9 53 60.4
Prupe.3G247200 Prunus persica HOM05D005170 ORTHO05D006985 1.9e-07 58.9 44 68.2
Sp7g03070 Schrenkiella parvula HOM05D005170 ORTHO05D006985 1.9e-07 58.9 52 61.5
unitig_899.g15113 Utricularia gibba HOM05D005170 ORTHO05D006985 1.9e-07 58.9 44 68.2
Ah.16g100870 Amaranthus hybridus HOM05D005170 ORTHO05D006985 2.5e-07 58.5 52 63.5
arahy.Tifrunner.gnm1.ann1.3DLK77 Arachis hypogaea HOM05D005170 ORTHO05D006985 2.5e-07 58.5 52 59.6
EL10Ac2g04408 Beta vulgaris HOM05D005170 ORTHO05D006985 2.5e-07 58.5 52 63.5
CiPaw.03G081400 Carya illinoinensis HOM05D005170 ORTHO05D006985 2.5e-07 58.5 44 68.2
Lj1g0005667 Lotus japonicus HOM05D005170 ORTHO05D006985 2.5e-07 58.5 52 59.6
Phvul.008G024500 Phaseolus vulgaris HOM05D005170 ORTHO05D006985 2.5e-07 58.5 52 59.6
Ciclev10011153m.g Citrus clementina HOM05D005170 ORTHO05D006985 3.2e-07 58.2 44 68.2
Glyma.18G276300 Glycine max HOM05D005170 ORTHO05D006985 4.2e-07 57.8 52 59.6
Psat3g194480 Pisum sativum HOM05D005170 ORTHO05D006985 4.2e-07 57.8 52 57.7
AagrBONN_evm.TU.Sc2ySwM_344.2160 Anthoceros agrestis HOM05D005170 ORTHO05D006985 5.5e-07 57.4 51 58.8
ATR0691G089 Amborella trichopoda HOM05D005170 ORTHO05D006985 7.1e-07 57.0 44 63.6
SHI25849 Sapria himalayana HOM05D005170 ORTHO05D006985 7.1e-07 57.0 44 63.6
Lalb_Chr10g0092611 Lupinus albus HOM05D005170 ORTHO05D006985 9.3e-07 56.6 52 57.7
SEGI_21333 Sequoiadendron giganteum HOM05D005170 ORTHO05D006985 9.3e-07 56.6 51 54.9
VMungo1383G1046 Vigna mungo HOM05D005170 ORTHO05D006985 1.2e-06 56.2 52 57.7
QL02p064873 Quercus lobata HOM05D005170 ORTHO05D006985 2.1e-06 55.5 36 75.0
Mapoly0045s0050 Marchantia polymorpha HOM05D005170 ORTHO05D006985 3.5e-06 54.7 44 63.6
MD09G1076900 Malus domestica HOM05D005170 ORTHO05D006985 4.6e-06 54.3 39 71.8


User provided reference genes

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