Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0477561 Rosa chinensis HOM05D007404 ORTHO05D009281 2.1e-141 505.8 262 100.0
FAN05G3976 Fragaria x ananassa HOM05D007404 ORTHO05D009281 2.7e-109 399.1 262 80.5
FvH4_6g21130 Fragaria vesca HOM05D007404 ORTHO05D009281 3.9e-108 395.2 262 80.5
FAN02G0840 Fragaria x ananassa HOM05D007404 ORTHO05D009281 8.7e-108 394.0 262 80.2
FAN14G5090 Fragaria x ananassa HOM05D007404 ORTHO05D009281 1.1e-107 393.7 262 80.2
FAN09G0350 Fragaria x ananassa HOM05D007404 ORTHO05D009281 7.4e-107 391.0 261 79.3
Prupe.7G088400 Prunus persica HOM05D007404 ORTHO05D009281 3.2e-86 322.4 264 67.4
MD14G1045900 Malus domestica HOM05D007404 ORTHO05D009281 2.7e-85 319.3 267 66.3
QL07p025963 Quercus lobata HOM05D007404 ORTHO05D009281 2.8e-58 229.6 265 53.2
CiPaw.09G024800 Carya illinoinensis HOM05D007404 ORTHO05D009281 3.7e-58 229.2 266 52.6
Cfa020098 Carpinus fangiana HOM05D007404 ORTHO05D009281 2.7e-56 223.0 260 52.7
Haze_20093 Corylus avellana HOM05D007404 ORTHO05D009281 8.6e-55 218.0 260 51.2
Atru.chr8.1254 Acer truncatum HOM05D007404 ORTHO05D009281 3.0e-52 209.5 261 48.3
Dinv25087 Davidia involucrata HOM05D007404 ORTHO05D009281 8.9e-52 208.0 259 47.9
Duzib093G1799 Durio zibethinus HOM05D007404 ORTHO05D009281 1.2e-51 207.6 262 47.3
Manes.08G038100 Manihot esculenta HOM05D007404 ORTHO05D009281 1.2e-51 207.6 260 48.5
CANSAT64G1742 Cannabis sativa HOM05D007404 ORTHO05D009281 1.5e-51 207.2 263 51.0
CiPaw.10G021900 Carya illinoinensis HOM05D007404 ORTHO05D009281 5.7e-51 205.3 264 49.6
Thecc.05G182600 Theobroma cacao HOM05D007404 ORTHO05D009281 5.4e-49 198.7 262 46.2
TWI74G0134 Tripterygium wilfordii HOM05D007404 ORTHO05D009281 9.2e-49 198.0 260 46.5
COL.COLO4_29466 Corchorus olitorius HOM05D007404 ORTHO05D009281 3.9e-47 192.6 263 44.1
Ciclev10012555m.g Citrus clementina HOM05D007404 ORTHO05D009281 5.0e-47 192.2 244 47.1
Potri.006G198500 Populus trichocarpa HOM05D007404 ORTHO05D009281 6.6e-47 191.8 264 48.1
Actinidia03848 Actinidia chinensis HOM05D007404 ORTHO05D009281 1.1e-46 191.0 258 47.7
Cpa.g.sc222.4 Carica papaya HOM05D007404 ORTHO05D009281 3.1e-44 183.0 260 44.2
ClCG01G015070 Citrullus lanatus HOM05D007404 ORTHO05D009281 1.2e-43 181.0 266 46.2
Rhsim03G0257900 Rhododendron simsii HOM05D007404 ORTHO05D009281 2.0e-43 180.3 258 44.6
Cc06_g07050 Coffea canephora HOM05D007404 ORTHO05D009281 2.6e-43 179.9 260 43.5
VMungo1383G2609 Vigna mungo HOM05D007404 ORTHO05D009281 1.7e-42 177.2 259 44.4
MELO3C024593.2 Cucumis melo HOM05D007404 ORTHO05D009281 6.4e-42 175.3 264 44.3
Phvul.001G199200 Phaseolus vulgaris HOM05D007404 ORTHO05D009281 6.4e-42 175.3 259 44.4
Sabra06G0152600 Salix brachista HOM05D007404 ORTHO05D009281 1.1e-41 174.5 262 43.5
CsaV3_6G041180 Cucumis sativus L. HOM05D007404 ORTHO05D009281 4.1e-41 172.6 255 44.7
Glyma.03G205600 Glycine max HOM05D007404 ORTHO05D009281 7.0e-41 171.8 262 43.5
Glyma.19G203100 Glycine max HOM05D007404 ORTHO05D009281 7.0e-41 171.8 264 43.9
Hma1.2p1_0304F.1_g119261 Hydrangea macrophylla HOM05D007404 ORTHO05D009281 2.7e-40 169.9 225 47.6
Lj1C1059T6 Lonicera japonica HOM05D007404 ORTHO05D009281 2.7e-40 169.9 259 43.6
Ca_09089_v3 Cicer arietinum L. HOM05D007404 ORTHO05D009281 2.3e-39 166.8 246 43.9
Eucgr.A02534 Eucalyptus grandis HOM05D007404 ORTHO05D009281 3.0e-39 166.4 222 45.0
Gorai.002G232900 Gossypium raimondii HOM05D007404 ORTHO05D009281 3.0e-39 166.4 260 41.5
Lalb_Chr25g0287801 Lupinus albus HOM05D007404 ORTHO05D009281 3.0e-39 166.4 258 41.9
arahy.Tifrunner.gnm1.ann1.T424Z8 Arachis hypogaea HOM05D007404 ORTHO05D009281 5.6e-38 162.2 260 41.2
vmacro06064 Vaccinium macrocarpon HOM05D007404 ORTHO05D009281 2.1e-37 160.2 247 42.5
Sed0004973 Sechium edule HOM05D007404 ORTHO05D009281 3.6e-37 159.5 265 43.4
DCAR_013466 Daucus carota HOM05D007404 ORTHO05D009281 1.1e-36 157.9 238 42.9
Gohir.A01G199200 Gossypium hirsutum HOM05D007404 ORTHO05D009281 1.2e-35 154.5 259 40.2
Psat3g026720 Pisum sativum HOM05D007404 ORTHO05D009281 1.5e-35 154.1 247 40.9
Actinidia03958 Actinidia chinensis HOM05D007404 ORTHO05D009281 2.6e-35 153.3 199 48.2
TPR.G14403 Trifolium pratense HOM05D007404 ORTHO05D009281 3.4e-35 152.9 244 42.2
TAR623G1670 Trochodendron aralioides HOM05D007404 ORTHO05D009281 4.4e-35 152.5 274 39.1
Nn2g14441 Nelumbo nucifera HOM05D007404 ORTHO05D009281 7.5e-35 151.8 295 39.3
Gohir.D01G189300 Gossypium hirsutum HOM05D007404 ORTHO05D009281 1.3e-34 151.0 260 40.0
Medtr7g107080 Medicago truncatula HOM05D007404 ORTHO05D009281 1.3e-34 151.0 230 43.0
FAN14G2589 Fragaria x ananassa HOM05D007404 ORTHO05D009281 1.7e-34 150.6 178 52.8
Nn2g14440 Nelumbo nucifera HOM05D007404 ORTHO05D009281 1.7e-34 150.6 265 39.6
PGSC0003DMG400022875 Solanum tuberosum HOM05D007404 ORTHO05D009281 3.7e-34 149.4 260 37.7
Peaxi162Scf00211g00002 Petunia axillaris HOM05D007404 ORTHO05D009281 6.4e-34 148.7 267 38.2
Nitab4.5_0000117g0060 Nicotiana tabacum HOM05D007404 ORTHO05D009281 8.3e-34 148.3 259 38.6
Solyc11g045270.3 Solanum lycopersicum HOM05D007404 ORTHO05D009281 8.3e-34 148.3 260 38.8
Dinv11908 Davidia involucrata HOM05D007404 ORTHO05D009281 1.4e-33 147.5 212 43.9
CAN.G13.10 Capsicum annuum HOM05D007404 ORTHO05D009281 1.9e-33 147.1 260 36.9
Nitab4.5_0012268g0010 Nicotiana tabacum HOM05D007404 ORTHO05D009281 3.2e-33 146.4 259 38.2
Lj1g0004547 Lotus japonicus HOM05D007404 ORTHO05D009281 4.1e-33 146.0 259 40.9
Oeu063091.1 Olea europaea HOM05D007404 ORTHO05D009281 1.2e-32 144.4 222 39.6
PGR004G0377 Punica granatum HOM05D007404 ORTHO05D009281 3.5e-32 142.9 231 40.3
Sopen11g020730 Solanum pennellii HOM05D007404 ORTHO05D009281 6.0e-32 142.1 260 36.9
AUR62038411 Chenopodium quinoa HOM05D007404 ORTHO05D009281 1.1e-28 131.3 238 37.0
ECA238G2201 Erigeron canadensis HOM05D007404 ORTHO05D009281 2.3e-28 130.2 242 38.8
AUR62036300 Chenopodium quinoa HOM05D007404 ORTHO05D009281 4.0e-28 129.4 238 36.1
Migut.J00747 Erythranthe guttata HOM05D007404 ORTHO05D009281 8.9e-28 128.3 228 36.4
MSTRG.19336 Avicennia marina HOM05D007404 ORTHO05D009281 1.5e-27 127.5 252 34.1
THA.LOC104826786 Tarenaya hassleriana HOM05D007404 ORTHO05D009281 2.6e-27 126.7 275 35.3
Hund10780 Selenicereus undatus HOM05D007404 ORTHO05D009281 3.4e-27 126.3 265 34.3
Lsat_1_v5_gn_2_102100 Lactuca sativa HOM05D007404 ORTHO05D009281 4.4e-27 125.9 255 36.9
MBI14_g28309_MAGBIO Magnolia biondii HOM05D007404 ORTHO05D009281 4.4e-27 125.9 313 34.5
Ah.02g113930 Amaranthus hybridus HOM05D007404 ORTHO05D009281 4.9e-26 122.5 237 35.9
EL10Ac5g11794 Beta vulgaris HOM05D007404 ORTHO05D009281 6.4e-26 122.1 236 36.4
Aqoxy1G00574 Aquilegia oxysepala HOM05D007404 ORTHO05D009281 1.9e-25 120.6 230 36.5
unitig_26.g9157 Utricularia gibba HOM05D000495 ORTHO05D009281 2.1e-24 117.1 222 34.7
Sc07g0007250 Simmondsia chinensis HOM05D007404 ORTHO05D009281 4.6e-24 115.9 255 32.9
HanXRQChr14g0453181 Helianthus annuus HOM05D007404 ORTHO05D009281 1.3e-23 114.4 116 53.4
ATR0686G215 Amborella trichopoda HOM05D007404 ORTHO05D009281 1.7e-23 114.0 316 29.7
SGA_v2.0_scaffold112G31676 Striga asiatica HOM05D007404 ORTHO05D009281 1.7e-23 114.0 222 35.1
Sp3g10090 Schrenkiella parvula HOM05D007404 ORTHO05D009281 2.2e-18 97.1 91 52.7
BcaB06g25568 Brassica carinata HOM05D007404 ORTHO05D009281 3.8e-18 96.3 146 42.5
Aa31LG3G5700 Aethionema arabicum HOM05D007404 ORTHO05D009281 4.9e-18 95.9 84 54.8
AT3G11890 Arabidopsis thaliana HOM05D007404 ORTHO05D009281 1.1e-17 94.7 91 50.5
HPP92_023288 Vanilla planifolia HOM05D007404 ORTHO05D009281 1.1e-17 94.7 81 50.6
BcaC05g29316 Brassica carinata HOM05D007404 ORTHO05D009281 1.9e-17 94.0 91 50.5
A05p37490 Brassica napus HOM05D007404 ORTHO05D009281 1.9e-17 94.0 91 50.5
C05p56050 Brassica napus HOM05D007404 ORTHO05D009281 1.9e-17 94.0 91 50.5
BolC5t34272H Brassica oleracea HOM05D007404 ORTHO05D009281 1.9e-17 94.0 91 50.5
BraA05t22547Z Brassica rapa HOM05D007404 ORTHO05D009281 1.9e-17 94.0 91 50.5
CARHR086420 Cardamine hirsuta HOM05D007404 ORTHO05D009281 1.9e-17 94.0 91 51.6
Thhalv10020684m.g Eutrema salsugineum HOM05D007404 ORTHO05D009281 1.9e-17 94.0 108 44.4
SEGI_39351 Sequoiadendron giganteum HOM05D007404 ORTHO05D009281 1.9e-17 94.0 88 50.0
FAN05G4411 Fragaria x ananassa HOM05D007404 ORTHO05D009281 2.3e-15 87.0 127 47.2
Carub.0003s1121 Capsella rubella HOM05D007404 ORTHO05D009281 3.0e-15 86.7 185 34.1
CDE09G0274 Ceratophyllum demersum HOM05D007404 ORTHO05D009281 3.0e-15 86.7 238 33.6
Os08g0378800 Oryza sativa ssp. japonica HOM05D007404 ORTHO05D009281 5.1e-15 85.9 80 48.8
Zm00001eb170760 Zea mays HOM05D007404 ORTHO05D009281 1.5e-14 84.3 232 30.6
GSVIVG01022504001 Vitis vinifera HOM05D007404 ORTHO05D009281 4.9e-10 69.3 105 44.8
Mapoly0022s0106 Marchantia polymorpha HOM05D007404 ORTHO05D009281 8.4e-10 68.6 82 41.5
CBR_g31169 Chara braunii HOM05D002304 ORTHO05D002363 4.3e-06 56.2 61 44.3
AagrBONN_evm.TU.Sc2ySwM_340.357 Anthoceros agrestis HOM05D007404 ORTHO05D009281 9.6e-06 55.1 64 40.6


User provided reference genes

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