Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0477171 Rosa chinensis HOM05D006703 ORTHO05D008389 1.0e-102 376.7 184 100.0
RcHm_v2.0_Chr3g0477081 Rosa chinensis HOM05D006703 ORTHO05D008389 9.2e-96 353.6 194 92.8
FAN05G2374 Fragaria x ananassa HOM05D006703 ORTHO05D008389 1.5e-93 346.3 194 90.7
FAN05G3633 Fragaria x ananassa HOM05D006703 ORTHO05D008389 7.3e-93 344.0 194 90.2
FAN09G4763 Fragaria x ananassa HOM05D006703 ORTHO05D008389 5.2e-91 337.8 194 88.7
FvH4_6g20830 Fragaria vesca HOM05D006703 ORTHO05D008389 2.0e-90 335.9 194 87.6
FAN14G3264 Fragaria x ananassa HOM05D006703 ORTHO05D008389 2.9e-89 332.0 194 87.1
FAN02G3199 Fragaria x ananassa HOM05D006703 ORTHO05D008389 2.1e-76 289.3 161 91.9
MD12G1044300 Malus domestica HOM05D006703 ORTHO05D008389 1.1e-75 287.0 192 74.0
Prupe.7G090900 Prunus persica HOM05D006703 ORTHO05D008389 2.6e-74 282.3 191 71.2
MD14G1043200 Malus domestica HOM05D006703 ORTHO05D008389 4.1e-72 275.0 193 71.5
QL07p026854 Quercus lobata HOM05D006703 ORTHO05D008389 4.8e-60 235.0 200 60.5
Actinidia37767 Actinidia chinensis HOM05D006703 ORTHO05D008389 4.4e-58 228.4 199 60.8
Cfa020082 Carpinus fangiana HOM05D006703 ORTHO05D008389 4.4e-58 228.4 187 59.4
Gorai.002G233800 Gossypium raimondii HOM05D006703 ORTHO05D008389 5.8e-58 228.0 187 59.9
Gohir.D01G190000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 7.6e-58 227.6 187 60.4
Gohir.A01G200000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 2.2e-57 226.1 187 60.4
Hma1.2p1_0401F.1_g144790 Hydrangea macrophylla HOM05D006703 ORTHO05D008389 2.9e-57 225.7 193 60.1
Duzib106G1644 Durio zibethinus HOM05D006703 ORTHO05D008389 3.8e-57 225.3 187 62.0
Nitab4.5_0000721g0180 Nicotiana tabacum HOM05D006703 ORTHO05D008389 6.4e-57 224.6 203 59.1
Lalb_Chr01g0017771 Lupinus albus HOM05D006703 ORTHO05D008389 1.1e-56 223.8 190 61.6
Thecc.05G108700 Theobroma cacao HOM05D006703 ORTHO05D008389 2.4e-56 222.6 188 61.7
ClCG10G018080 Citrullus lanatus HOM05D006703 ORTHO05D008389 7.1e-56 221.1 196 58.2
Haze_20110 Corylus avellana HOM05D006703 ORTHO05D008389 7.1e-56 221.1 186 58.1
Potri.016G066800 Populus trichocarpa HOM05D006703 ORTHO05D008389 7.1e-56 221.1 193 59.1
Sabra16G0068200 Salix brachista HOM05D006703 ORTHO05D008389 1.6e-55 219.9 193 58.5
Nitab4.5_0001918g0020 Nicotiana tabacum HOM05D006703 ORTHO05D008389 4.6e-55 218.4 203 56.7
CiPaw.10G019700 Carya illinoinensis HOM05D006703 ORTHO05D008389 1.3e-54 216.9 189 57.1
GSVIVG01022605001 Vitis vinifera HOM05D006703 ORTHO05D008389 1.7e-54 216.5 198 57.6
CANSAT64G1940 Cannabis sativa HOM05D006703 ORTHO05D008389 5.1e-54 214.9 195 54.4
COL.COLO4_29515 Corchorus olitorius HOM05D006703 ORTHO05D008389 6.6e-54 214.5 187 59.9
ECA233G5710 Erigeron canadensis HOM05D006703 ORTHO05D008389 8.7e-54 214.2 201 56.2
Sed0006927 Sechium edule HOM05D006703 ORTHO05D008389 1.5e-53 213.4 188 55.9
Lj1A1058G53 Lonicera japonica HOM05D006703 ORTHO05D008389 3.3e-53 212.2 200 56.5
DCAR_013453 Daucus carota HOM05D006703 ORTHO05D008389 4.3e-53 211.8 194 55.7
Duzib093G0046 Durio zibethinus HOM05D006703 ORTHO05D008389 5.6e-53 211.5 186 58.6
Eucgr.K01914 Eucalyptus grandis HOM05D006703 ORTHO05D008389 1.6e-52 209.9 203 56.2
MELO3C009564.2 Cucumis melo HOM05D006703 ORTHO05D008389 2.8e-52 209.1 196 56.6
Rhsim03G0062400 Rhododendron simsii HOM05D006703 ORTHO05D008389 4.8e-52 208.4 196 58.7
MSTRG.26583 Avicennia marina HOM05D006703 ORTHO05D008389 6.2e-52 208.0 184 58.7
CiPaw.09G023100 Carya illinoinensis HOM05D006703 ORTHO05D008389 6.2e-52 208.0 192 55.7
Manes.09G042800 Manihot esculenta HOM05D006703 ORTHO05D008389 6.2e-52 208.0 193 57.0
Hund14986 Selenicereus undatus HOM05D006703 ORTHO05D008389 1.1e-51 207.2 197 54.8
SGA_v2.0_scaffold31G12818 Striga asiatica HOM05D006703 ORTHO05D008389 1.1e-51 207.2 189 55.6
HanXRQChr02g0052921 Helianthus annuus HOM05D006703 ORTHO05D008389 1.8e-51 206.5 194 55.2
MSTRG.19329 Avicennia marina HOM05D006703 ORTHO05D008389 2.4e-51 206.1 200 55.5
TWI74G0187 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 5.3e-51 204.9 212 51.9
Manes.08G036200 Manihot esculenta HOM05D006703 ORTHO05D008389 2.0e-50 203.0 201 54.2
Phvul.001G197500 Phaseolus vulgaris HOM05D006703 ORTHO05D008389 2.0e-50 203.0 189 57.1
TPR.G34442 Trifolium pratense HOM05D006703 ORTHO05D008389 2.0e-50 203.0 203 55.2
Medtr7g106660 Medicago truncatula HOM05D006703 ORTHO05D008389 3.4e-50 202.2 196 57.1
Ca_09072_v3 Cicer arietinum L. HOM05D006703 ORTHO05D008389 4.5e-50 201.8 195 57.4
Nn2g14390 Nelumbo nucifera HOM05D006703 ORTHO05D008389 9.9e-50 200.7 197 54.3
Oeu020165.3 Olea europaea HOM05D006703 ORTHO05D008389 2.2e-49 199.5 243 46.1
TWI77G0507 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 2.2e-49 199.5 201 53.2
Sed0010784 Sechium edule HOM05D006703 ORTHO05D008389 2.9e-49 199.1 202 53.0
HanXRQChr13g0398671 Helianthus annuus HOM05D006703 ORTHO05D008389 4.9e-49 198.4 202 54.5
TAR636G3193 Trochodendron aralioides HOM05D004977 ORTHO05D006454 4.9e-49 198.4 176 58.0
Atru.chr8.1299 Acer truncatum HOM05D006703 ORTHO05D008389 1.1e-48 197.2 174 58.0
Lj1g0009334 Lotus japonicus HOM05D006703 ORTHO05D008389 1.4e-48 196.8 204 53.9
PGSC0003DMG400028230 Solanum tuberosum HOM05D006703 ORTHO05D008389 1.9e-48 196.4 199 51.8
PGR004G0398 Punica granatum HOM05D006703 ORTHO05D008389 2.4e-48 196.1 194 54.6
AUR62030691 Chenopodium quinoa HOM05D006703 ORTHO05D008389 3.2e-48 195.7 202 53.5
Solyc10g081750.1 Solanum lycopersicum HOM05D006703 ORTHO05D008389 3.2e-48 195.7 199 52.3
Sopen10g032260 Solanum pennellii HOM05D006703 ORTHO05D008389 3.2e-48 195.7 199 52.3
Ah.12g059450 Amaranthus hybridus HOM05D001890 ORTHO05D003442 7.1e-48 194.5 203 52.7
Hund10833 Selenicereus undatus HOM05D006703 ORTHO05D008389 7.1e-48 194.5 198 51.5
arahy.Tifrunner.gnm1.ann1.8DDT0E Arachis hypogaea HOM05D006703 ORTHO05D008389 1.6e-47 193.4 209 53.1
VMungo1383G2242 Vigna mungo HOM05D001890 ORTHO05D003442 1.6e-47 193.4 189 54.0
arahy.Tifrunner.gnm1.ann1.W58RTV Arachis hypogaea HOM05D006703 ORTHO05D008389 2.1e-47 193.0 209 52.6
CsaV3_3G038210 Cucumis sativus L. HOM05D006703 ORTHO05D008389 3.5e-47 192.2 199 53.8
EL10Ac5g11822 Beta vulgaris HOM05D006703 ORTHO05D008389 4.6e-47 191.8 200 52.0
Glyma.03G204000 Glycine max HOM05D006703 ORTHO05D008389 6.7e-46 188.0 197 51.8
Peaxi162Scf00203g00910 Petunia axillaris HOM05D006703 ORTHO05D008389 6.7e-46 188.0 181 55.8
Psat3g028120 Pisum sativum HOM05D006703 ORTHO05D008389 1.3e-44 183.7 196 53.6
EL10Ac9g21006 Beta vulgaris HOM05D006703 ORTHO05D008389 2.1e-44 183.0 202 50.5
vmacro07494 Vaccinium macrocarpon HOM05D006703 ORTHO05D008389 8.1e-44 181.0 287 41.1
SGA_v2.0_scaffold392G50677 Striga asiatica HOM05D006703 ORTHO05D008389 1.4e-43 180.3 189 52.4
C03p23140 Brassica napus HOM05D006703 ORTHO05D008389 1.8e-43 179.9 200 51.5
MBI05_g29094_MAGBIO Magnolia biondii HOM05D006703 ORTHO05D008389 1.8e-43 179.9 204 48.5
Migut.J00741 Erythranthe guttata HOM05D006703 ORTHO05D008389 2.4e-43 179.5 208 50.5
Sc22g0003150 Simmondsia chinensis HOM05D006703 ORTHO05D008389 2.4e-43 179.5 197 50.8
BcaB06g28891 Brassica carinata HOM05D006703 ORTHO05D008389 3.1e-43 179.1 196 50.0
BcaC01g05692 Brassica carinata HOM05D006703 ORTHO05D008389 9.0e-43 177.6 199 50.8
BolC3t14715H Brassica oleracea HOM05D006703 ORTHO05D008389 9.0e-43 177.6 199 50.8
PSO017G1234 Papaver somniferum HOM05D006703 ORTHO05D008389 9.0e-43 177.6 208 50.5
Aa31LG5G21040 Aethionema arabicum HOM05D006703 ORTHO05D008389 1.2e-42 177.2 199 50.3
BolC4t27966H Brassica oleracea HOM05D006703 ORTHO05D008389 1.2e-42 177.2 201 49.8
AT2G35900 Arabidopsis thaliana HOM05D006703 ORTHO05D008389 1.5e-42 176.8 202 48.5
BcaC02g07656 Brassica carinata HOM05D006703 ORTHO05D008389 2.0e-42 176.4 201 49.3
BraA04t18236Z Brassica rapa HOM05D006703 ORTHO05D008389 4.5e-42 175.3 201 48.3
Thhalv10017281m.g Eutrema salsugineum HOM05D006703 ORTHO05D008389 4.5e-42 175.3 195 48.7
BraA03t11234Z Brassica rapa HOM05D006703 ORTHO05D008389 5.8e-42 174.9 200 50.0
Cc06_g06870 Coffea canephora HOM05D006703 ORTHO05D008389 5.8e-42 174.9 227 44.5
CARHR130150 Cardamine hirsuta HOM05D006703 ORTHO05D008389 7.6e-42 174.5 197 50.8
C04p64910 Brassica napus HOM05D006703 ORTHO05D008389 1.0e-41 174.1 201 48.8
AL4G32000 Arabidopsis lyrata HOM05D006703 ORTHO05D008389 1.3e-41 173.7 202 48.0
A04p27380 Brassica napus HOM05D006703 ORTHO05D008389 1.3e-41 173.7 206 47.1
A03p19820 Brassica napus HOM05D006703 ORTHO05D008389 3.8e-41 172.2 200 51.0
Sp4g18150 Schrenkiella parvula HOM05D006703 ORTHO05D008389 8.4e-41 171.0 201 46.8
Carub.0004s1765 Capsella rubella HOM05D006703 ORTHO05D008389 7.9e-39 164.5 200 47.0
ATR0697G151 Amborella trichopoda HOM05D006703 ORTHO05D008389 1.0e-38 164.1 145 53.1
THA.LOC104823512 Tarenaya hassleriana HOM05D006703 ORTHO05D008389 1.5e-37 160.2 190 46.8
Zm00001eb151930 Zea mays HOM05D006703 ORTHO05D008389 1.5e-37 160.2 183 45.4
AUR62036335 Chenopodium quinoa HOM05D006703 ORTHO05D008389 4.3e-37 158.7 188 47.3
Os01g0771200 Oryza sativa ssp. japonica HOM05D006703 ORTHO05D008389 2.1e-36 156.4 156 48.7
Aqoxy1G00585 Aquilegia oxysepala HOM05D006703 ORTHO05D008389 2.8e-36 156.0 203 46.8
CDE10G0766 Ceratophyllum demersum HOM05D006703 ORTHO05D008389 2.0e-34 149.8 137 54.7
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 1.0e-33 147.5 131 61.1
Actinidia03970 Actinidia chinensis HOM05D006703 ORTHO05D008389 9.3e-32 141.0 164 49.4
unitig_749.g14212 Utricularia gibba HOM05D006703 ORTHO05D008389 6.1e-31 138.3 120 54.2
Actinidia03862 Actinidia chinensis HOM05D006703 ORTHO05D008389 5.7e-29 131.7 126 57.9
Oeu045018.1 Olea europaea HOM05D006703 ORTHO05D008389 3.3e-21 105.9 83 57.8
SHI28311 Sapria himalayana HOM05D006703 ORTHO05D008389 9.4e-16 87.8 128 45.3
Glyma.19G201366 Glycine max HOM05D006703 ORTHO05D008389 1.0e-14 84.3 124 40.3
CDE10G0313 Ceratophyllum demersum HOM05D006703 ORTHO05D001378 7.4e-13 78.2 131 39.7
AagrBONN_evm.TU.Sc2ySwM_369.455 Anthoceros agrestis HOM05D006703 ORTHO05D008389 5.3e-11 72.0 162 32.7
Dinv16712 Davidia involucrata HOM05D006703 ORTHO05D008389 9.1e-11 71.2 68 54.4
SEGI_14783 Sequoiadendron giganteum HOM05D000064 ORTHO05D008389 3.5e-10 69.3 44 65.9
Mapoly0024s0129 Marchantia polymorpha HOM05D006703 ORTHO05D008389 1.7e-09 67.0 145 34.5
SEGI_41401 Sequoiadendron giganteum HOM05D006703 ORTHO05D008389 2.9e-09 66.2 48 58.3
Pp3c9_17430 Physcomitrium patens HOM05D006703 ORTHO05D008389 2.1e-07 60.1 94 39.4
Sc17g0001990 Simmondsia chinensis HOM05D006703 ORTHO05D008389 4.7e-07 58.9 56 55.4


User provided reference genes

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