Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 1.3e-117 426.4 216 100.0
RcHm_v2.0_Chr3g0476881 Rosa chinensis HOM05D006596 ORTHO05D008497 3.4e-65 252.3 159 86.8
FAN14G5569 Fragaria x ananassa HOM05D006596 ORTHO05D008497 9.2e-47 191.0 167 67.1
FvH4_6g20810 Fragaria vesca HOM05D006596 ORTHO05D008497 7.8e-46 188.0 167 66.5
FAN02G0500 Fragaria x ananassa HOM05D006596 ORTHO05D008497 2.3e-45 186.4 167 65.9
FAN09G2534 Fragaria x ananassa HOM05D006596 ORTHO05D008497 2.3e-45 186.4 165 67.3
Prupe.7G091000 Prunus persica HOM05D006596 ORTHO05D008497 6.2e-43 178.3 162 62.3
MD12G1044100 Malus domestica HOM05D006596 ORTHO05D008497 4.2e-39 165.6 168 57.1
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 3.3e-20 102.8 136 46.3
Haze_20109 Corylus avellana HOM05D006596 ORTHO05D008497 1.8e-18 97.1 177 40.7
Ciclev10010964m.g Citrus clementina HOM05D006596 ORTHO05D008497 3.1e-18 96.3 160 39.4
Cfa020083 Carpinus fangiana HOM05D006596 ORTHO05D008497 4.0e-18 95.9 171 41.5
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 5.3e-18 95.5 46 95.7
Potri.006G200800 Populus trichocarpa HOM05D006596 ORTHO05D008497 6.9e-18 95.1 170 41.2
CANSAT64G0970 Cannabis sativa HOM05D006596 ORTHO05D008497 1.5e-17 94.0 158 39.9
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 3.4e-17 92.8 169 40.8
Sabra06G0154500 Salix brachista HOM05D006596 ORTHO05D008497 4.9e-16 89.0 164 36.6
Duzib093G1929 Durio zibethinus HOM05D006596 ORTHO05D008497 1.9e-15 87.0 154 44.8
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 4.2e-15 85.9 46 80.4
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 4.2e-15 85.9 46 80.4
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 5.5e-15 85.5 45 86.7
COL.COLO4_29516 Corchorus olitorius HOM05D006596 ORTHO05D008497 5.5e-15 85.5 168 37.5
Hma1.2p1_1654F.1_g295850 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 9.3e-15 84.7 117 44.4
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 1.2e-14 84.3 46 78.3
Thecc.05G108600 Theobroma cacao HOM05D006596 ORTHO05D008497 1.2e-14 84.3 132 40.9
TWI74G0317 Tripterygium wilfordii HOM05D006596 ORTHO05D008497 1.2e-14 84.3 173 34.7
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 1.6e-14 84.0 45 80.0
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 1.6e-14 84.0 45 82.2
CSS0017956 Camellia sinensis var. sinensis HOM05D006596 ORTHO05D008497 2.7e-14 83.2 166 39.2
Dinv11886 Davidia involucrata HOM05D006596 ORTHO05D008497 2.7e-14 83.2 113 44.2
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 2.7e-14 83.2 45 80.0
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 4.6e-14 82.4 45 82.2
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 6.0e-14 82.0 45 80.0
Cpa.g.sc222.25 Carica papaya HOM05D006596 ORTHO05D008497 1.0e-13 81.3 159 38.4
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 2.3e-13 80.1 45 80.0
Ca_11668_v3 Cicer arietinum L. HOM05D006596 ORTHO05D008497 3.9e-13 79.3 140 34.3
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 5.1e-13 79.0 63 58.7
Rhsim03G0062300 Rhododendron simsii HOM05D006596 ORTHO05D008497 5.1e-13 79.0 167 36.5
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 1.1e-12 77.8 45 73.3
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 1.5e-12 77.4 45 73.3
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 1.5e-12 77.4 84 45.2
CiPaw.09G023000 Carya illinoinensis HOM05D006596 ORTHO05D008497 1.9e-12 77.0 175 34.9
Gohir.D11G332300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 1.9e-12 77.0 199 34.2
Manes.09G043000 Manihot esculenta HOM05D006596 ORTHO05D008497 1.9e-12 77.0 128 43.0
Atru.chr1.1412 Acer truncatum HOM05D006596 ORTHO05D008497 2.5e-12 76.6 162 35.8
Potri.006G041600 Populus trichocarpa HOM05D008360 ORTHO05D010532 3.3e-12 76.3 45 75.6
Gorai.007G363200 Gossypium raimondii HOM05D006596 ORTHO05D008497 4.3e-12 75.9 199 34.7
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 7.4e-12 75.1 44 70.5
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 7.4e-12 75.1 45 73.3
Gohir.A11G315300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 9.6e-12 74.7 202 33.2
THA.LOC104816628 Tarenaya hassleriana HOM05D006596 ORTHO05D008497 9.6e-12 74.7 133 36.8
TAR636G1255 Trochodendron aralioides HOM05D006596 ORTHO05D008497 1.3e-11 74.3 166 34.9
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 2.1e-11 73.6 43 69.8
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 2.1e-11 73.6 45 71.1
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 2.8e-11 73.2 51 68.6
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 3.7e-11 72.8 45 64.4
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 3.7e-11 72.8 45 71.1
Lj5g0008032 Lotus japonicus HOM05D006596 ORTHO05D008497 4.8e-11 72.4 134 35.8
Lj1g0003695 Lotus japonicus HOM05D008360 ORTHO05D010532 1.4e-10 70.9 45 66.7
Medtr1g055295 Medicago truncatula HOM05D006596 ORTHO05D008497 1.4e-10 70.9 145 33.8
Sabra06G0028300 Salix brachista HOM05D008360 ORTHO05D010532 1.8e-10 70.5 43 72.1
arahy.Tifrunner.gnm1.ann1.LHUB84 Arachis hypogaea HOM05D008360 ORTHO05D010532 2.4e-10 70.1 45 66.7
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 4.1e-10 69.3 45 64.4
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 5.3e-10 68.9 45 66.7
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 9.0e-10 68.2 144 37.5
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 1.5e-09 67.4 45 62.2
Medtr7g090260 Medicago truncatula HOM05D008360 ORTHO05D010532 1.5e-09 67.4 45 64.4
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 2.6e-09 66.6 45 64.4
Gohir.A09G118500 Gossypium hirsutum HOM05D008360 ORTHO05D010532 2.6e-09 66.6 45 66.7
Gohir.D09G115400 Gossypium hirsutum HOM05D008360 ORTHO05D010532 2.6e-09 66.6 45 66.7
Gorai.006G133100 Gossypium raimondii HOM05D008360 ORTHO05D010532 2.6e-09 66.6 45 66.7
VMungo0720G1474 Vigna mungo HOM05D006596 ORTHO05D008497 2.6e-09 66.6 135 34.1
Glyma.02G192800 Glycine max HOM05D006596 ORTHO05D008497 7.6e-09 65.1 128 35.9
Aa31LG10G11990 Aethionema arabicum HOM05D008360 ORTHO05D010532 1.0e-08 64.7 45 60.0
Lalb_Chr25g0286871 Lupinus albus HOM05D008360 ORTHO05D010532 1.0e-08 64.7 45 66.7
Actinidia17687 Actinidia chinensis HOM05D008360 ORTHO05D010532 1.3e-08 64.3 39 69.2
EL10Ac4g10108 Beta vulgaris HOM05D006596 ORTHO05D008497 1.3e-08 64.3 161 31.7
Carub.0005s2387 Capsella rubella HOM05D008360 ORTHO05D010532 2.2e-08 63.5 45 60.0
CARHR167260 Cardamine hirsuta HOM05D008360 ORTHO05D010532 3.8e-08 62.8 45 57.8
Hma1.2p1_1402F.1_g281060 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 3.8e-08 62.8 91 42.9
TPR.G39620 Trifolium pratense HOM05D006596 ORTHO05D008497 3.8e-08 62.8 127 36.2
A09p49990 Brassica napus HOM05D008360 ORTHO05D010532 5.0e-08 62.4 45 60.0
C08p32400 Brassica napus HOM05D008360 ORTHO05D010532 5.0e-08 62.4 45 60.0
BolC8t50854H Brassica oleracea HOM05D008360 ORTHO05D010532 5.0e-08 62.4 45 60.0
BraA09t40449Z Brassica rapa HOM05D008360 ORTHO05D010532 5.0e-08 62.4 45 60.0
Cc06_g06860 Coffea canephora HOM05D006596 ORTHO05D008497 5.0e-08 62.4 157 35.0
Thhalv10006358m.g Eutrema salsugineum HOM05D008360 ORTHO05D010532 5.0e-08 62.4 45 60.0
Hma1.2p1_1094F.1_g256510 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 5.0e-08 62.4 91 42.9
PSO384G3670 Papaver somniferum HOM05D008360 ORTHO05D010532 5.0e-08 62.4 45 60.0
AL5G38550 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 6.5e-08 62.0 45 57.8
AT3G57062 Arabidopsis thaliana HOM05D008360 ORTHO05D010532 6.5e-08 62.0 45 57.8
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 6.5e-08 62.0 116 41.4
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 6.5e-08 62.0 37 67.6
Lalb_Chr20g0110161 Lupinus albus HOM05D008360 ORTHO05D010532 1.4e-07 60.8 46 67.4
Phvul.007G266200 Phaseolus vulgaris HOM05D006596 ORTHO05D008497 1.4e-07 60.8 133 33.1
RcHm_v2.0_Chr3g0477841 Rosa chinensis HOM05D008360 ORTHO05D010532 1.4e-07 60.8 48 66.7
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 2.5e-07 60.1 137 32.8
Aqoxy1G00603 Aquilegia oxysepala HOM05D006596 ORTHO05D008497 4.2e-07 59.3 144 31.2
Hma1.2p1_1048F.1_g251680 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 4.2e-07 59.3 45 60.0
THA.LOC104824413 Tarenaya hassleriana HOM05D008360 ORTHO05D010532 4.2e-07 59.3 45 53.3
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 9.3e-07 58.2 160 30.6
Nitab4.5_0009788g0010 Nicotiana tabacum HOM05D006596 ORTHO05D008497 9.3e-07 58.2 147 35.4
PSO384G2212 Papaver somniferum HOM05D006596 ORTHO05D008497 2.1e-06 57.0 159 31.4
PGR004G2850 Punica granatum HOM05D006596 ORTHO05D008497 2.1e-06 57.0 135 34.1
AT5G06400 Arabidopsis thaliana HOM05D006596 ORTHO05D008497 2.7e-06 56.6 112 36.6
Nn4g26016 Nelumbo nucifera HOM05D006596 ORTHO05D008497 2.7e-06 56.6 166 30.1
Aa31sc52G230 Aethionema arabicum HOM05D006596 ORTHO05D008497 6.1e-06 55.5 152 30.9
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 6.1e-06 55.5 159 35.2
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 7.9e-06 55.1 151 32.5
Lalb_Chr02g0154271 Lupinus albus HOM05D006596 ORTHO05D008497 7.9e-06 55.1 167 33.5


User provided reference genes

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