Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 1.3e-38 162.5 77 100.0
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 8.5e-19 96.7 46 95.7
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 5.5e-18 94.0 49 83.7
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 7.2e-18 93.6 49 87.8
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 2.1e-17 92.0 49 81.6
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 2.1e-17 92.0 49 83.7
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 3.6e-17 91.3 47 80.9
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 3.6e-17 91.3 47 80.9
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 3.6e-17 91.3 49 81.6
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 6.1e-17 90.5 49 83.7
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 7.9e-17 90.1 49 81.6
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 3.0e-16 88.2 49 81.6
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 1.9e-15 85.5 49 75.5
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 7.4e-15 83.6 47 74.5
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 9.7e-15 83.2 49 75.5
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 1.3e-14 82.8 48 72.9
Potri.006G041600 Populus trichocarpa HOM05D008360 ORTHO05D010532 1.6e-14 82.4 49 75.5
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 2.8e-14 81.6 46 73.9
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 2.8e-14 81.6 47 72.3
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 4.8e-14 80.9 49 67.3
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 4.8e-14 80.9 49 73.5
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 1.4e-13 79.3 46 69.6
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 1.8e-13 79.0 47 72.3
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 6.9e-13 77.0 49 69.4
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 1.5e-12 75.9 42 78.6
arahy.Tifrunner.gnm1.ann1.LHUB84 Arachis hypogaea HOM05D008360 ORTHO05D010532 2.0e-12 75.5 47 68.1
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 2.0e-12 75.5 48 64.6
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 2.6e-12 75.1 49 65.3
Lj1g0003695 Lotus japonicus HOM05D008360 ORTHO05D010532 2.6e-12 75.1 47 66.0
Medtr7g090260 Medicago truncatula HOM05D008360 ORTHO05D010532 2.6e-12 75.1 48 66.7
Gohir.A09G118500 Gossypium hirsutum HOM05D008360 ORTHO05D010532 3.4e-12 74.7 49 69.4
Gohir.D09G115400 Gossypium hirsutum HOM05D008360 ORTHO05D010532 3.4e-12 74.7 49 69.4
Gorai.006G133100 Gossypium raimondii HOM05D008360 ORTHO05D010532 3.4e-12 74.7 49 69.4
Aa31LG10G11990 Aethionema arabicum HOM05D008360 ORTHO05D010532 1.3e-11 72.8 49 63.3
Sabra06G0028300 Salix brachista HOM05D008360 ORTHO05D010532 1.7e-11 72.4 44 70.5
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 2.9e-11 71.6 47 66.0
CARHR167260 Cardamine hirsuta HOM05D008360 ORTHO05D010532 5.0e-11 70.9 50 60.0
Carub.0005s2387 Capsella rubella HOM05D008360 ORTHO05D010532 1.1e-10 69.7 49 61.2
Lalb_Chr20g0110161 Lupinus albus HOM05D008360 ORTHO05D010532 1.9e-10 68.9 50 70.0
A09p49990 Brassica napus HOM05D008360 ORTHO05D010532 2.5e-10 68.6 49 61.2
C08p32400 Brassica napus HOM05D008360 ORTHO05D010532 2.5e-10 68.6 49 61.2
BolC8t50854H Brassica oleracea HOM05D008360 ORTHO05D010532 2.5e-10 68.6 49 61.2
BraA09t40449Z Brassica rapa HOM05D008360 ORTHO05D010532 2.5e-10 68.6 49 61.2
Thhalv10006358m.g Eutrema salsugineum HOM05D008360 ORTHO05D010532 2.5e-10 68.6 49 61.2
Lalb_Chr25g0286871 Lupinus albus HOM05D008360 ORTHO05D010532 2.5e-10 68.6 46 67.4
AL5G38550 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 3.2e-10 68.2 49 59.2
AT3G57062 Arabidopsis thaliana HOM05D008360 ORTHO05D010532 3.2e-10 68.2 49 59.2
Actinidia17687 Actinidia chinensis HOM05D008360 ORTHO05D010532 5.5e-10 67.4 39 71.8
THA.LOC104824413 Tarenaya hassleriana HOM05D008360 ORTHO05D010532 5.5e-10 67.4 49 57.1
PSO384G3670 Papaver somniferum HOM05D008360 ORTHO05D010532 7.2e-10 67.0 49 59.2
RcHm_v2.0_Chr3g0477841 Rosa chinensis HOM05D008360 ORTHO05D010532 2.1e-09 65.5 30 100.0
Hma1.2p1_1048F.1_g251680 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 2.7e-09 65.1 49 61.2
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 2.7e-09 65.1 37 70.3
BcaC02g12894 Brassica carinata HOM05D008360 ORTHO05D010532 3.6e-09 64.7 53 54.7
Os07g0213500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 2.0e-07 58.9 49 49.0
AL4G39310 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 5.7e-07 57.4 49 49.0
Os03g0810500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 5.7e-07 57.4 49 53.1
Carub.0004s2362 Capsella rubella HOM05D008360 ORTHO05D010532 4.8e-06 54.3 49 49.0


User provided reference genes

Program Settings