Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 5.4e-142 507.7 264 100.0
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 1.1e-113 413.7 264 84.8
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 8.5e-87 324.3 265 73.2
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 2.3e-84 316.2 264 72.3
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 4.0e-84 315.5 264 72.3
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.0e-83 313.2 255 71.0
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 4.0e-76 288.9 275 64.0
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 1.7e-71 273.5 277 60.6
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 1.1e-70 270.8 276 60.5
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.4e-65 253.8 144 92.4
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 1.6e-64 250.4 280 57.1
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 7.8e-64 248.1 256 57.8
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 3.1e-60 236.1 280 53.9
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 2.0e-59 233.4 287 52.3
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 2.6e-59 233.0 274 54.4
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 2.2e-58 229.9 210 67.1
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 6.4e-58 228.4 274 53.6
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 1.1e-57 227.6 276 52.9
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 1.9e-57 226.9 277 53.4
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 3.2e-57 226.1 273 53.8
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 3.2e-57 226.1 274 51.5
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 4.1e-57 225.7 273 54.9
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 2.1e-56 223.4 280 52.1
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 2.7e-56 223.0 281 52.0
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 3.5e-56 222.6 273 51.3
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 3.5e-56 222.6 269 51.3
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 7.8e-56 221.5 276 53.6
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 2.3e-55 219.9 161 70.8
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 3.9e-55 219.2 281 52.3
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 8.6e-55 218.0 255 52.2
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 1.9e-54 216.9 151 72.8
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 2.5e-54 216.5 287 49.8
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 3.3e-54 216.1 267 50.2
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 4.3e-54 215.7 151 74.8
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 4.3e-54 215.7 151 72.2
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 4.3e-54 215.7 282 51.4
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 4.3e-54 215.7 286 47.9
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 9.5e-54 214.5 277 48.4
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 1.6e-53 213.8 271 54.2
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 2.8e-53 213.0 264 50.4
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 2.8e-53 213.0 281 51.2
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 4.7e-53 212.2 270 51.9
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 8.1e-53 211.5 273 52.4
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 1.1e-52 211.1 274 47.8
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 1.1e-52 211.1 267 49.1
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 1.4e-52 210.7 272 48.5
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 1.4e-52 210.7 270 48.5
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 1.8e-52 210.3 209 56.5
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 2.3e-52 209.9 151 69.5
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 4.0e-52 209.1 263 47.9
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 5.2e-52 208.8 151 70.9
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 8.9e-52 208.0 278 46.8
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 1.2e-51 207.6 151 70.2
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 1.5e-51 207.2 152 69.7
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 2.0e-51 206.8 152 71.1
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 2.6e-51 206.5 214 54.2
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 4.4e-51 205.7 207 55.6
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 7.6e-51 204.9 247 50.6
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 9.9e-51 204.5 265 47.9
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 9.9e-51 204.5 264 50.4
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 9.9e-51 204.5 258 48.8
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 1.3e-50 204.1 178 60.7
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 8.4e-50 201.4 255 47.1
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 1.1e-49 201.1 262 46.9
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.1e-49 201.1 151 66.9
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 2.4e-49 199.9 178 61.2
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 2.4e-49 199.9 176 63.1
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 5.4e-49 198.7 189 59.3
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 7.1e-49 198.4 265 49.4
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 1.2e-48 197.6 151 66.2
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 1.6e-48 197.2 266 45.1
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 3.5e-48 196.1 266 45.9
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 3.5e-48 196.1 164 61.0
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 4.6e-48 195.7 208 53.4
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 4.6e-48 195.7 278 48.2
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 6.0e-48 195.3 164 59.8
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 1.0e-47 194.5 262 49.2
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 1.0e-47 194.5 267 46.4
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 1.3e-47 194.1 272 46.7
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 1.3e-47 194.1 290 45.9
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 1.7e-47 193.7 267 45.3
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 3.0e-47 193.0 268 46.6
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 3.0e-47 193.0 249 47.4
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 3.9e-47 192.6 276 46.7
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 6.6e-47 191.8 161 60.9
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 1.1e-46 191.0 151 62.9
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 1.1e-46 191.0 262 46.2
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 1.1e-46 191.0 269 46.1
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 9.6e-46 188.0 151 62.9
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 8.1e-45 184.9 151 62.3
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 8.1e-45 184.9 273 45.4
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 3.1e-44 183.0 271 45.4
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 8.9e-44 181.4 291 45.7
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 2.2e-42 176.8 205 50.7
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 2.9e-42 176.4 151 62.3
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 6.4e-42 175.3 302 43.0
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 4.2e-41 172.6 279 42.7
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 7.1e-41 171.8 181 54.7
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.3e-37 161.0 263 45.6
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 1.4e-36 157.5 202 50.0
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 1.8e-36 157.1 161 51.6
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 3.4e-35 152.9 112 68.8
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 3.5e-32 142.9 275 40.0
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 1.3e-29 134.4 203 45.8
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 3.6e-29 132.9 199 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 1.2e-27 127.9 177 42.4
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 2.0e-27 127.1 163 47.2
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.1e-25 121.3 84 73.8
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 8.7e-23 111.7 193 41.5
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 3.3e-22 109.8 208 39.9
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 1.3e-21 107.8 81 70.4
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 6.2e-21 105.5 165 38.2
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 1.7e-18 97.4 199 34.2
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 4.9e-18 95.9 100 59.0
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 1.9e-17 94.0 100 55.0
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 1.9e-17 94.0 122 36.9
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 3.1e-12 76.6 113 38.1
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 5.3e-12 75.9 160 32.5
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 5.3e-12 75.9 160 32.5
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 1.6e-08 64.3 237 28.3
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 1.0e-07 61.6 95 41.1
SalBow1G6520 Salvia bowleyana HOM05D001890 ORTHO05D008163 8.7e-07 58.5 44 59.1


User provided reference genes

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