Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0476641 Rosa chinensis HOM05D000257 ORTHO05D029148 6.2e-24 113.2 55 100.0
FvH4_6g20760 Fragaria vesca HOM05D000257 ORTHO05D007882 1.5e-17 92.0 54 81.5
FAN09G1036 Fragaria x ananassa HOM05D000257 ORTHO05D007882 1.5e-17 92.0 54 81.5
FAN14G5499 Fragaria x ananassa HOM05D000257 ORTHO05D007882 4.3e-17 90.5 54 79.6
FAN05G1677 Fragaria x ananassa HOM05D000257 ORTHO05D007882 5.7e-17 90.1 54 79.6
FAN05G1719 Fragaria x ananassa HOM05D000257 ORTHO05D007882 5.7e-17 90.1 54 79.6
FAN02G1740 Fragaria x ananassa HOM05D000257 ORTHO05D007882 3.7e-16 87.4 54 77.8
MD14G1152200 Malus domestica HOM05D000257 ORTHO05D007882 3.7e-16 87.4 54 83.3
CiPaw.13G146200 Carya illinoinensis HOM05D000257 ORTHO05D007882 8.4e-13 76.3 45 82.2
Haze_18327 Corylus avellana HOM05D000257 ORTHO05D007882 1.1e-12 75.9 45 82.2
MBI16_g25135_MAGBIO Magnolia biondii HOM05D000257 ORTHO05D007882 1.9e-12 75.1 45 88.9
Aqoxy6G01879 Aquilegia oxysepala HOM05D000257 ORTHO05D007882 2.5e-12 74.7 47 83.0
TAR626G0079 Trochodendron aralioides HOM05D000257 ORTHO05D007882 7.1e-12 73.2 41 92.7
Aqoxy7G00996 Aquilegia oxysepala HOM05D000257 ORTHO05D007882 1.2e-11 72.4 40 90.0
Aqoxy1G01909 Aquilegia oxysepala HOM05D000257 ORTHO05D007882 6.1e-11 70.1 40 87.5
Prupe.5G147200 Prunus persica HOM05D000257 ORTHO05D007882 1.8e-10 68.6 34 100.0
Sed0001456 Sechium edule HOM05D000257 ORTHO05D007882 2.3e-10 68.2 43 76.7
HPP92_005718 Vanilla planifolia HOM05D000257 ORTHO05D007882 2.3e-10 68.2 47 68.1
Actinidia14134 Actinidia chinensis HOM05D000257 ORTHO05D007882 3.0e-10 67.8 39 87.2
ClCG05G015930 Citrullus lanatus HOM05D000257 ORTHO05D007882 3.0e-10 67.8 55 65.5
Dinv16884 Davidia involucrata HOM05D000257 ORTHO05D007882 3.0e-10 67.8 41 85.4
CSS0008745 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D007882 5.1e-10 67.0 39 87.2
MELO3C016928.2 Cucumis melo HOM05D000257 ORTHO05D007882 5.1e-10 67.0 47 72.3
ClCG09G003310 Citrullus lanatus HOM05D000257 ORTHO05D007882 6.7e-10 66.6 56 64.3
CANSAT56G0635 Cannabis sativa HOM05D000257 ORTHO05D007882 8.7e-10 66.2 38 86.8
Haze_20102 Corylus avellana HOM05D000257 ORTHO05D029148 8.7e-10 66.2 45 77.8
TAR626G1570 Trochodendron aralioides HOM05D000257 ORTHO05D007882 8.7e-10 66.2 34 97.1
Manes.03G056000 Manihot esculenta HOM05D000257 ORTHO05D007882 1.5e-09 65.5 44 77.3
TWI63G0681 Tripterygium wilfordii HOM05D000257 ORTHO05D007882 1.5e-09 65.5 38 81.6
CSS0019170 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D007882 2.5e-09 64.7 34 94.1
CDE05G3488 Ceratophyllum demersum HOM05D000736 ORTHO05D007882 2.5e-09 64.7 36 91.7
vmacro23463 Vaccinium macrocarpon HOM05D000257 ORTHO05D007882 3.3e-09 64.3 34 88.2
Rhsim01G0002400 Rhododendron simsii HOM05D000257 ORTHO05D007882 4.3e-09 63.9 36 83.3
Lalb_Chr11g0063401 Lupinus albus HOM05D000257 ORTHO05D007882 7.4e-09 63.2 46 69.6
PGR119G0414 Punica granatum HOM05D000257 ORTHO05D007882 7.4e-09 63.2 36 88.9
ATR0681G227 Amborella trichopoda HOM05D000257 ORTHO05D007882 9.7e-09 62.8 43 69.8
Lj7P526T74 Lonicera japonica HOM05D000257 ORTHO05D007882 1.3e-08 62.4 34 88.2
GSVIVG01035500001 Vitis vinifera HOM05D000257 ORTHO05D007882 1.3e-08 62.4 34 91.2
CDE05G3218 Ceratophyllum demersum HOM05D000257 ORTHO05D007882 1.6e-08 62.0 34 91.2
DCAR_004761 Daucus carota HOM05D000257 ORTHO05D007882 1.6e-08 62.0 36 83.3
Psat5g035840 Pisum sativum HOM05D000257 ORTHO05D007882 1.6e-08 62.0 51 60.8
Potri.006G218100 Populus trichocarpa HOM05D000257 ORTHO05D007882 1.6e-08 62.0 43 76.7
VMungo0647G2131 Vigna mungo HOM05D000257 ORTHO05D007882 1.6e-08 62.0 36 77.8
Glyma.08G106300 Glycine max HOM05D000257 ORTHO05D007882 2.2e-08 61.6 36 77.8
Thecc.09G066100 Theobroma cacao HOM05D000257 ORTHO05D007882 2.8e-08 61.2 44 70.5
arahy.Tifrunner.gnm1.ann1.2DRB7F Arachis hypogaea HOM05D000257 ORTHO05D007882 3.7e-08 60.8 37 78.4
arahy.Tifrunner.gnm1.ann1.416NC9 Arachis hypogaea HOM05D000257 ORTHO05D007882 3.7e-08 60.8 37 78.4
Ciclev10008231m.g Citrus clementina HOM05D000257 ORTHO05D007882 3.7e-08 60.8 47 68.1
Lj1g0007895 Lotus japonicus HOM05D000257 ORTHO05D007882 3.7e-08 60.8 42 69.0
Aa31LG1G13450 Aethionema arabicum HOM05D000257 ORTHO05D007882 4.8e-08 60.5 36 80.6
arahy.Tifrunner.gnm1.ann1.W22R0G Arachis hypogaea HOM05D000257 ORTHO05D007882 4.8e-08 60.5 36 80.6
Atru.chr7.1816 Acer truncatum HOM05D000257 ORTHO05D007882 6.3e-08 60.1 41 73.2
EL10Ac1g01520 Beta vulgaris HOM05D000257 ORTHO05D007882 6.3e-08 60.1 32 90.6
Ca_15802_v3 Cicer arietinum L. HOM05D000257 ORTHO05D007882 6.3e-08 60.1 34 79.4
Duzib168G0022 Durio zibethinus HOM05D000257 ORTHO05D007882 6.3e-08 60.1 44 68.2
Hma1.2p1_0208F.1_g088160 Hydrangea macrophylla HOM05D000257 ORTHO05D007882 6.3e-08 60.1 39 76.9
Medtr3g105530 Medicago truncatula HOM05D000257 ORTHO05D007882 6.3e-08 60.1 51 60.8
SHI17973 Sapria himalayana HOM05D000257 ORTHO05D007882 6.3e-08 60.1 35 77.1
TPR.G21442 Trifolium pratense HOM05D000257 ORTHO05D007882 6.3e-08 60.1 42 66.7
CARHR191560 Cardamine hirsuta HOM05D000257 ORTHO05D007882 8.2e-08 59.7 36 80.6
AUR62013550 Chenopodium quinoa HOM05D000257 ORTHO05D007882 1.4e-07 58.9 32 87.5
AUR62037994 Chenopodium quinoa HOM05D000257 ORTHO05D007882 1.4e-07 58.9 32 87.5
Sc02g0004200 Simmondsia chinensis HOM05D000257 ORTHO05D007882 1.4e-07 58.9 38 76.3
AL6G32930 Arabidopsis lyrata HOM05D000257 ORTHO05D007882 2.4e-07 58.2 36 77.8
AT5G21970 Arabidopsis thaliana HOM05D000257 ORTHO05D007882 2.4e-07 58.2 36 77.8
BcaB08g36462 Brassica carinata HOM05D000257 ORTHO05D007882 2.4e-07 58.2 36 75.0
BcaC04g19529 Brassica carinata HOM05D000257 ORTHO05D007882 2.4e-07 58.2 36 75.0
A10p18750 Brassica napus HOM05D000257 ORTHO05D007882 2.4e-07 58.2 36 75.0
C09p54700 Brassica napus HOM05D000257 ORTHO05D007882 2.4e-07 58.2 36 75.0
BolC9t58334H Brassica oleracea HOM05D000257 ORTHO05D007882 2.4e-07 58.2 36 75.0
BraA10t43955Z Brassica rapa HOM05D000257 ORTHO05D007882 2.4e-07 58.2 36 75.0
Carub.0006s1961 Capsella rubella HOM05D000257 ORTHO05D007882 2.4e-07 58.2 36 77.8
Medtr0153s0070 Medicago truncatula HOM05D000257 ORTHO05D007882 2.4e-07 58.2 34 79.4
Sp6g23220 Schrenkiella parvula HOM05D000257 ORTHO05D007882 2.4e-07 58.2 36 77.8
Solyc01g079430.2 Solanum lycopersicum HOM05D000257 ORTHO05D007882 2.4e-07 58.2 35 88.6
Sopen01g031210 Solanum pennellii HOM05D000257 ORTHO05D007882 2.4e-07 58.2 35 88.6
Ah.04g159340 Amaranthus hybridus HOM05D000257 ORTHO05D007882 3.1e-07 57.8 32 87.5
CAN.G100.79 Capsicum annuum HOM05D000257 ORTHO05D007882 3.1e-07 57.8 35 85.7
AUR62037996 Chenopodium quinoa HOM05D000257 ORTHO05D007882 3.1e-07 57.8 32 84.4
CsaV3_4G036200 Cucumis sativus L. HOM05D000257 ORTHO05D007882 3.1e-07 57.8 34 79.4
Thhalv10013576m.g Eutrema salsugineum HOM05D000257 ORTHO05D007882 3.1e-07 57.8 36 75.0
Phvul.001G029400 Phaseolus vulgaris HOM05D000257 ORTHO05D007882 4.1e-07 57.4 36 69.4
PGSC0003DMG400009010 Solanum tuberosum HOM05D000257 ORTHO05D007882 5.3e-07 57.0 33 90.9
Gohir.A06G080900 Gossypium hirsutum HOM05D000257 ORTHO05D007882 6.9e-07 56.6 44 68.2
Gohir.D06G080400 Gossypium hirsutum HOM05D000257 ORTHO05D007882 6.9e-07 56.6 44 68.2
Gorai.010G093700 Gossypium raimondii HOM05D000257 ORTHO05D007882 6.9e-07 56.6 44 68.2
Nitab4.5_0000055g0230 Nicotiana tabacum HOM05D000257 ORTHO05D007882 6.9e-07 56.6 35 85.7
Peaxi162Scf01054g00016 Petunia axillaris HOM05D000257 ORTHO05D007882 6.9e-07 56.6 35 85.7
Hund17425 Selenicereus undatus HOM05D000257 ORTHO05D007882 6.9e-07 56.6 34 76.5
unitig_37.g12760 Utricularia gibba HOM05D000257 ORTHO05D007882 6.9e-07 56.6 38 68.4
Nitab4.5_0006606g0010 Nicotiana tabacum HOM05D000257 ORTHO05D007882 9.0e-07 56.2 35 82.9
Sabra06G0168100 Salix brachista HOM05D000257 ORTHO05D007882 9.0e-07 56.2 32 87.5
MSTRG.6232 Avicennia marina HOM05D000257 ORTHO05D007882 1.5e-06 55.5 38 73.7
Nitab4.5_0011152g0010 Nicotiana tabacum HOM05D000257 ORTHO05D007882 1.5e-06 55.5 33 87.9
COL.COLO4_21166 Corchorus olitorius HOM05D000257 ORTHO05D007882 2.6e-06 54.7 34 76.5
HanXRQChr14g0455241 Helianthus annuus HOM05D000257 ORTHO05D007882 2.6e-06 54.7 36 77.8
SGA_v2.0_scaffold237G43836 Striga asiatica HOM05D000257 ORTHO05D007882 5.9e-06 53.5 37 75.7
Cc06_g13110 Coffea canephora HOM05D000257 ORTHO05D007882 1.0e-05 52.8 34 73.5
HanXRQChr06g0180321 Helianthus annuus HOM05D000257 ORTHO05D007882 1.0e-05 52.8 34 79.4


User provided reference genes

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