Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 7.2e-189 663.7 320 100.0
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 1.2e-180 636.3 320 94.4
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.4e-179 632.9 316 95.6
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.0e-179 631.7 316 95.6
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 6.5e-174 614.0 320 91.6
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 2.7e-172 608.6 320 90.0
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.2e-161 572.4 322 86.6
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 2.2e-161 572.4 315 85.4
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 3.7e-161 571.6 316 83.9
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 8.3e-161 570.5 315 83.8
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 1.8e-160 569.3 317 83.6
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 7.0e-160 567.4 318 83.3
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 9.2e-160 567.0 320 83.1
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.2e-159 566.6 318 82.7
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 1.6e-159 566.2 314 84.4
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 5.9e-159 564.3 315 83.2
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 1.0e-158 563.5 315 83.2
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 6.6e-158 560.8 317 83.0
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 6.6e-158 560.8 315 83.5
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 1.9e-157 559.3 315 82.5
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 5.6e-157 557.8 319 82.4
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 9.5e-157 557.0 316 82.3
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 9.5e-157 557.0 315 82.2
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 9.5e-157 557.0 317 81.1
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 2.1e-156 555.8 320 80.6
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 6.2e-156 554.3 317 81.1
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 2.3e-155 552.4 316 80.7
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 2.3e-155 552.4 315 80.6
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 3.1e-155 552.0 314 81.5
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 3.1e-155 552.0 316 81.0
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 3.1e-155 552.0 315 80.6
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 5.2e-155 551.2 316 81.6
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 5.2e-155 551.2 310 83.2
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 1.2e-154 550.1 316 81.3
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 1.2e-154 550.1 313 81.5
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 1.5e-154 549.7 316 80.1
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 2.6e-154 548.9 309 82.8
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 2.6e-154 548.9 315 81.0
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 2.6e-154 548.9 314 81.2
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 3.4e-154 548.5 314 80.9
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 4.4e-154 548.1 316 80.1
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 7.5e-154 547.4 315 81.3
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 7.5e-154 547.4 304 83.9
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 9.8e-154 547.0 315 82.9
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 1.3e-153 546.6 315 83.2
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 1.7e-153 546.2 320 79.4
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 1.7e-153 546.2 299 84.6
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 2.2e-153 545.8 318 81.1
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 2.2e-153 545.8 315 80.6
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 2.9e-153 545.4 317 79.5
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 4.9e-153 544.7 320 80.0
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 8.3e-153 543.9 313 80.8
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 1.1e-152 543.5 321 79.8
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 1.9e-152 542.7 312 80.1
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 7.0e-152 540.8 315 80.3
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 1.0e-150 537.0 310 79.7
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 1.0e-150 537.0 297 85.5
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 2.3e-150 535.8 301 83.4
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 2.3e-150 535.8 311 79.1
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.3e-150 535.8 270 94.4
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 6.6e-150 534.3 300 83.3
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 1.5e-149 533.1 321 76.6
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.9e-149 532.7 317 79.2
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 5.6e-149 531.2 311 80.4
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 2.8e-148 528.9 319 77.7
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 3.6e-148 528.5 311 80.1
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 6.2e-148 527.7 301 82.4
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 8.1e-148 527.3 310 80.0
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 1.1e-147 526.9 300 81.0
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 1.4e-147 526.6 311 79.7
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 1.2e-146 523.5 298 83.9
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 2.6e-146 522.3 367 70.0
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 2.6e-146 522.3 299 80.6
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 1.3e-145 520.0 300 80.7
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 2.9e-145 518.8 298 80.5
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 1.2e-143 513.5 305 77.7
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.5e-143 511.9 310 75.5
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 1.7e-142 509.6 309 78.3
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 8.1e-140 500.7 319 76.2
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 2.3e-139 499.2 313 78.0
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 1.2e-138 496.9 315 74.3
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.5e-138 496.5 299 76.9
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 4.4e-138 495.0 294 78.9
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 5.8e-138 494.6 291 79.4
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 1.3e-137 493.4 313 72.8
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 5.4e-136 488.0 299 74.9
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 2.3e-134 482.6 318 68.6
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 4.7e-132 474.9 262 84.7
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 1.1e-131 473.8 314 68.2
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 8.9e-131 470.7 286 78.3
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.0e-130 469.5 262 84.4
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 8.4e-129 464.2 262 84.0
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 4.2e-128 461.8 265 80.4
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 1.2e-127 460.3 314 72.0
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 5.1e-126 454.9 254 82.3
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 2.0e-122 443.0 299 70.9
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 2.6e-122 442.6 308 65.9
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 2.6e-122 442.6 254 81.1
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 2.4e-115 419.5 269 75.1
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 5.8e-114 414.8 287 66.2
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 2.4e-112 409.5 299 69.6
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 2.8e-108 396.0 239 77.4
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.2e-106 390.6 317 58.7
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 2.6e-106 389.4 258 71.7
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 1.3e-105 387.1 315 58.7
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 4.2e-104 382.1 218 81.2
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.0e-94 350.9 210 78.1
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 8.5e-89 331.3 326 51.2
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 5.1e-86 322.0 306 50.7
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.7e-79 298.9 204 68.1
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 8.2e-76 288.1 299 50.8
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 1.4e-75 287.3 288 47.2
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 5.9e-74 282.0 170 77.6
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 3.2e-72 276.2 179 71.5
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 9.1e-67 258.1 170 72.9
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.9e-65 253.1 165 70.9
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 3.8e-65 252.7 146 80.1
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.3e-60 235.0 132 81.8
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 3.8e-57 226.1 184 60.9
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 6.8e-54 215.3 119 81.5
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 3.7e-52 209.5 174 60.9
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 3.5e-50 203.0 115 80.0
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 2.3e-49 200.3 130 71.5
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 8.0e-47 191.8 104 83.7
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 4.0e-46 189.5 107 81.3
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 5.4e-43 179.1 124 68.5
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 1.2e-39 167.9 172 53.5
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 2.2e-36 157.1 118 62.7
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 6.0e-34 149.1 105 65.7
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 7.8e-34 148.7 324 34.3
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 1.6e-31 141.0 95 71.6
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.6e-31 141.0 106 62.3
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.6e-31 139.8 320 33.4
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 6.4e-28 129.0 71 84.5
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 1.3e-25 121.3 306 31.4
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.3e-24 116.7 114 54.4
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 4.6e-18 96.3 69 63.8
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 1.3e-17 94.7 69 63.8
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 3.0e-17 93.6 95 49.5
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 1.5e-13 81.3 42 88.1
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 1.5e-13 81.3 42 88.1
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 4.4e-13 79.7 294 25.9
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 7.6e-13 79.0 55 65.5
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 2.2e-12 77.4 40 87.5
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 2.2e-12 77.4 294 26.2
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.4e-11 74.7 314 27.1
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 1.4e-11 74.7 165 29.7
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 2.4e-11 73.9 46 69.6
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.2e-10 71.6 285 26.7
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.5e-10 70.1 302 22.8
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 3.5e-10 70.1 283 25.4
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.3e-09 68.2 305 23.6
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 2.3e-09 67.4 306 25.5
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 2.3e-09 67.4 63 55.6
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.6e-09 65.9 284 23.9
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.9e-08 64.3 212 26.9
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.9e-08 64.3 215 25.6
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 3.3e-08 63.5 219 28.8
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 5.6e-08 62.8 284 23.9
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.6e-08 62.8 284 23.9
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.6e-08 62.8 284 23.9
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.6e-08 62.8 284 23.9
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.3e-08 62.4 284 23.9
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.6e-07 61.2 284 23.9
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.6e-07 61.2 284 23.9
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.1e-07 60.8 217 26.3
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 2.1e-07 60.8 301 24.6
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 6.2e-07 59.3 206 26.2
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 6.2e-07 59.3 215 25.6
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-06 57.8 206 26.2
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 4.0e-06 56.6 217 26.7
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 5.3e-06 56.2 78 41.0


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