Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1726.1 887 100.0
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1675.2 887 96.7
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1564.7 879 91.1
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1560.0 879 90.8
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1518.4 879 89.1
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1515.7 879 88.9
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 0.0e+00 1492.2 832 91.1
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1438.7 896 84.6
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 0.0e+00 1296.2 889 75.7
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1268.8 662 96.8
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 0.0e+00 1222.2 927 71.4
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 0.0e+00 1170.6 944 66.8
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 0.0e+00 1112.1 879 65.2
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 0.0e+00 1111.3 877 66.0
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 0.0e+00 1088.2 875 64.1
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 0.0e+00 1076.2 888 62.8
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 5.1e-309 1064.3 883 64.1
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 4.6e-302 1041.2 880 61.8
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.8e-299 1031.2 880 61.5
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.2e-297 1026.5 880 61.4
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 2.0e-297 1025.8 853 62.7
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.4e-295 1019.6 888 61.6
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.5e-294 1015.0 878 62.5
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 9.6e-292 1006.9 889 60.3
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.3e-291 1006.5 882 60.9
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.1e-290 1003.4 878 59.7
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.8e-290 1002.7 878 59.7
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 9.0e-290 1000.3 878 59.6
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.2e-286 989.9 877 59.1
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.8e-285 986.1 922 57.7
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 3.9e-285 984.9 880 58.5
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.8e-282 976.1 889 57.8
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 9.0e-282 973.8 879 59.6
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 5.8e-281 971.1 879 59.3
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 2.2e-280 969.1 746 66.9
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 3.9e-277 958.4 883 58.9
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.1e-274 950.3 931 56.8
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 4.6e-270 934.9 885 56.4
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 7.9e-270 934.1 742 64.7
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 5.1e-269 931.4 884 56.1
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.7e-267 926.4 877 55.9
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.2e-267 926.0 850 59.3
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 2.4e-266 922.5 883 55.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 3.1e-266 922.2 881 56.3
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 2.0e-265 919.5 883 55.6
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 2.5e-263 912.5 862 55.7
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.4e-261 906.7 879 54.8
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.8e-258 896.3 876 54.7
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 2.6e-257 892.5 882 55.0
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 5.9e-257 891.3 882 54.9
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 2.1e-254 882.9 876 55.3
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.6e-254 882.1 879 54.8
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 5.7e-252 874.8 861 54.5
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 9.7e-252 874.0 874 53.9
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 4.8e-251 871.7 860 54.9
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.8e-250 869.8 728 62.0
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 2.0e-249 866.3 879 53.0
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.0e-248 864.0 892 53.4
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.7e-243 846.7 878 52.3
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.7e-241 837.8 884 50.8
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 9.4e-239 830.9 882 50.7
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 2.1e-238 829.7 884 50.2
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 4.0e-237 825.5 881 50.4
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 5.7e-236 821.6 889 49.6
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 4.1e-234 815.5 875 50.6
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 9.1e-234 814.3 905 50.3
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.1e-231 807.4 695 60.1
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 3.3e-231 805.8 947 48.5
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.6e-230 803.5 893 49.2
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 3.0e-229 799.3 887 49.9
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 2.0e-228 796.6 882 50.0
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 2.0e-228 796.6 881 51.3
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.2e-227 793.1 853 51.9
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 6.6e-224 781.6 727 56.4
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 3.3e-223 779.2 884 48.4
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.6e-222 776.9 880 48.3
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 2.1e-222 776.5 896 48.7
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 4.7e-222 775.4 694 58.8
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 5.2e-221 771.9 648 62.8
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.7e-219 765.8 884 49.1
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 6.4e-219 765.0 889 48.1
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 5.4e-218 761.9 891 48.6
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 2.7e-217 759.6 886 47.6
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 3.5e-217 759.2 886 47.9
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 2.3e-216 756.5 886 47.7
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 2.3e-216 756.5 886 47.4
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 5.0e-216 755.4 889 48.5
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 5.0e-216 755.4 887 47.6
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 3.6e-214 749.2 886 47.3
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 3.4e-212 742.7 888 47.3
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 5.4e-210 735.3 905 46.5
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.1e-209 733.4 885 47.5
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 6.0e-209 731.9 708 55.9
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 3.9e-208 729.2 828 49.2
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-205 720.7 848 48.9
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.1e-198 696.8 628 56.8
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.4e-197 693.3 890 46.7
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 5.2e-197 692.2 924 44.0
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 3.4e-196 689.5 894 45.2
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 1.3e-195 687.6 700 54.3
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 8.4e-195 684.9 888 45.2
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 3.5e-193 679.5 821 47.4
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.1e-170 604.7 703 49.8
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.2e-170 603.2 697 46.3
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.0e-164 583.9 879 40.6
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.8e-157 560.8 551 55.0
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 3.8e-155 553.1 636 46.4
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 7.9e-153 545.4 748 42.0
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.0e-148 530.8 781 42.3
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 2.5e-146 523.9 914 39.6
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 1.5e-138 498.0 893 36.7
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 2.6e-132 477.2 692 40.8
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.3e-131 474.9 559 46.5
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 7.5e-111 406.0 754 37.3
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.1e-106 392.1 261 76.6
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 3.6e-105 387.1 607 38.1
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 6.2e-97 359.8 810 32.5
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.3e-96 357.8 954 30.1
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.3e-96 357.8 954 30.1
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 8.9e-96 355.9 983 29.5
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.5e-95 355.1 240 77.9
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.1e-93 349.0 238 77.3
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 8.1e-89 332.8 554 39.9
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.0e-83 314.3 236 69.1
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.2e-81 308.9 743 31.0
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.2e-76 292.4 531 34.7
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 8.1e-73 279.6 192 76.6
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 2.6e-71 274.6 193 74.1
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 5.8e-71 273.5 199 68.3
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 4.9e-70 270.4 193 70.5
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 5.3e-64 250.4 338 43.2
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 5.8e-63 246.9 350 38.6
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 2.9e-62 244.6 188 63.3
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 4.9e-62 243.8 201 59.7
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.4e-56 224.9 731 27.5
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 3.4e-55 221.1 297 43.4
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.9e-54 217.2 201 54.7
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.9e-50 205.3 234 48.3
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 3.3e-50 204.5 108 96.3
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 5.7e-50 203.8 138 76.8
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.3e-49 202.6 324 39.5
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 2.2e-41 175.3 188 49.5
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 9.0e-40 169.9 215 43.3
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 2.9e-38 164.9 142 61.3
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 4.2e-37 161.0 217 39.6
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.5e-37 160.6 214 44.4
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.4e-34 151.0 222 41.4
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 2.2e-33 148.7 184 44.0
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 1.4e-27 129.4 432 28.9
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 3.0e-27 128.3 84 79.8
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 5.2e-27 127.5 374 28.6
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.3e-25 122.9 94 61.7
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 5.3e-24 117.5 97 64.9
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 7.0e-24 117.1 93 59.1
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.8e-22 111.3 100 58.0
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.5e-21 108.6 111 50.5
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 5.5e-21 107.5 185 37.8
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.1e-20 105.5 202 35.6
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 5.7e-18 97.4 170 38.2
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 3.1e-16 91.7 114 42.1
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 5.2e-11 74.3 50 68.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-09 68.9 76 46.1
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.7e-07 62.0 88 37.5


User provided reference genes

Program Settings