Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0474621 Rosa chinensis HOM05D007282 ORTHO05D009214 4.1e-110 401.4 198 100.0
FAN02G3890 Fragaria x ananassa HOM05D007282 ORTHO05D009214 4.6e-93 344.7 198 89.4
FvH4_6g19360 Fragaria vesca HOM05D007282 ORTHO05D009214 3.9e-92 341.7 198 89.4
Prupe.7G102300 Prunus persica HOM05D007282 ORTHO05D009214 6.7e-68 261.2 185 74.1
Nn6g34828 Nelumbo nucifera HOM05D007282 ORTHO05D009214 2.9e-55 219.2 197 60.4
PGR142G4217 Punica granatum HOM05D007282 ORTHO05D009214 2.1e-53 213.0 138 73.9
Dinv21175 Davidia involucrata HOM05D007282 ORTHO05D009214 2.7e-53 212.6 145 71.7
CiPaw.09G016500 Carya illinoinensis HOM05D007282 ORTHO05D009214 3.9e-52 208.8 186 60.8
Gohir.A09G141100 Gossypium hirsutum HOM05D007282 ORTHO05D009214 6.7e-52 208.0 139 72.7
Gohir.D09G133600 Gossypium hirsutum HOM05D007282 ORTHO05D009214 8.7e-52 207.6 139 72.7
Potri.006G210000 Populus trichocarpa HOM05D007282 ORTHO05D009214 8.7e-52 207.6 180 62.2
Gorai.006G153100 Gossypium raimondii HOM05D007282 ORTHO05D009214 1.5e-51 206.8 139 71.9
Thecc.05G094100 Theobroma cacao HOM05D007282 ORTHO05D009214 1.9e-51 206.5 152 67.1
CsaV3_6G040780 Cucumis sativus L. HOM05D007282 ORTHO05D009214 2.5e-51 206.1 175 63.4
Eucgr.K02566 Eucalyptus grandis HOM05D007282 ORTHO05D009214 2.5e-51 206.1 142 71.1
Sed0020389 Sechium edule HOM05D007282 ORTHO05D009214 4.3e-51 205.3 143 69.2
TWI53G0193 Tripterygium wilfordii HOM05D007282 ORTHO05D009214 5.7e-51 204.9 142 69.7
ClCG04G010160 Citrullus lanatus HOM05D007282 ORTHO05D009214 2.2e-50 203.0 145 69.0
MELO3C024557.2 Cucumis melo HOM05D007282 ORTHO05D009214 2.2e-50 203.0 175 62.3
Atru.chr8.1455 Acer truncatum HOM05D007282 ORTHO05D009214 2.8e-50 202.6 143 73.4
Sabra06G0161800 Salix brachista HOM05D007282 ORTHO05D009214 3.7e-50 202.2 182 61.0
QL07p038317 Quercus lobata HOM05D007282 ORTHO05D009214 1.4e-49 200.3 196 57.1
Haze_19645 Corylus avellana HOM05D007282 ORTHO05D009214 1.8e-49 199.9 143 69.9
Hma1.2p1_0769F.1_g215750 Hydrangea macrophylla HOM05D007282 ORTHO05D009214 1.8e-49 199.9 142 70.4
vmacro07443 Vaccinium macrocarpon HOM05D007282 ORTHO05D009214 1.8e-49 199.9 198 57.1
Duzib093G1732 Durio zibethinus HOM05D007282 ORTHO05D009214 3.1e-49 199.1 143 69.2
MSTRG.19274 Avicennia marina HOM05D007282 ORTHO05D009214 5.3e-49 198.4 191 56.0
Cpa.g.sc104.101 Carica papaya HOM05D007282 ORTHO05D009214 5.3e-49 198.4 184 57.6
CSS0014712 Camellia sinensis var. sinensis HOM05D007282 ORTHO05D009214 6.9e-49 198.0 144 69.4
CSS0036453 Camellia sinensis var. sinensis HOM05D007282 ORTHO05D009214 6.9e-49 198.0 144 69.4
CANSAT64G2352 Cannabis sativa HOM05D007282 ORTHO05D009214 9.0e-49 197.6 139 69.8
Glyma.02G201500 Glycine max HOM05D007282 ORTHO05D009214 1.5e-48 196.8 196 57.1
Glyma.10G075000 Glycine max HOM05D007282 ORTHO05D009214 2.6e-48 196.1 196 56.6
Manes.08G027500 Manihot esculenta HOM05D000972 ORTHO05D007713 4.5e-48 195.3 136 69.9
Lj2A142T14 Lonicera japonica HOM05D007282 ORTHO05D009214 5.9e-48 194.9 139 69.8
Phvul.007G163900 Phaseolus vulgaris HOM05D007282 ORTHO05D009214 7.7e-48 194.5 189 56.6
TAR623G0904 Trochodendron aralioides HOM05D007282 ORTHO05D009214 1.7e-47 193.4 177 59.3
Oeu025665.1 Olea europaea HOM05D007282 ORTHO05D009214 2.9e-47 192.6 182 59.3
Lalb_Chr06g0172471 Lupinus albus HOM05D007282 ORTHO05D009214 3.8e-47 192.2 183 59.0
SalBow3G4659 Salvia bowleyana HOM05D007282 ORTHO05D009214 3.8e-47 192.2 142 68.3
Ca_30898_v3 Cicer arietinum L. HOM05D007282 ORTHO05D009214 5.5e-46 188.3 189 58.7
Lj5g0026678 Lotus japonicus HOM05D007282 ORTHO05D009214 9.4e-46 187.6 183 58.5
Psat6g084240 Pisum sativum HOM05D007282 ORTHO05D009214 9.4e-46 187.6 162 62.3
GSVIVG01033882001 Vitis vinifera HOM05D007282 ORTHO05D009214 3.6e-45 185.7 113 77.9
SGA_v2.0_scaffold31G12895 Striga asiatica HOM05D007282 ORTHO05D009214 6.1e-45 184.9 131 68.7
PSO384G4616 Papaver somniferum HOM05D007282 ORTHO05D009214 1.0e-44 184.1 189 54.0
Lsat_1_v5_gn_5_165601 Lactuca sativa HOM05D007282 ORTHO05D009214 1.4e-44 183.7 137 65.7
Zm00001eb366810 Zea mays HOM05D007282 ORTHO05D009214 2.3e-44 183.0 136 62.5
ATR0820G206 Amborella trichopoda HOM05D007282 ORTHO05D009214 3.0e-44 182.6 143 62.9
ECA248G2482 Erigeron canadensis HOM05D005132 ORTHO05D005823 3.9e-44 182.2 136 65.4
Migut.J01006 Erythranthe guttata HOM05D007282 ORTHO05D009214 3.9e-44 182.2 177 56.5
Rhsim03G0070300 Rhododendron simsii HOM05D007282 ORTHO05D009214 6.7e-44 181.4 199 54.3
Os01g0862200 Oryza sativa ssp. japonica HOM05D007282 ORTHO05D009214 1.1e-43 180.6 136 61.0
HanXRQChr13g0390101 Helianthus annuus HOM05D007282 ORTHO05D009214 1.5e-43 180.3 137 63.5
Aqoxy4G02730 Aquilegia oxysepala HOM05D007282 ORTHO05D009214 2.0e-43 179.9 145 64.8
Cc00_g15490 Coffea canephora HOM05D007282 ORTHO05D009214 2.0e-43 179.9 113 76.1
TPR.G14774 Trifolium pratense HOM05D007282 ORTHO05D009214 2.5e-43 179.5 184 56.5
HPP92_001104 Vanilla planifolia HOM05D007282 ORTHO05D009214 1.3e-42 177.2 156 60.9
Peaxi162Scf00069g00612 Petunia axillaris HOM05D007282 ORTHO05D009214 1.7e-42 176.8 181 55.8
PSO339G4969 Papaver somniferum HOM05D007282 ORTHO05D009214 2.8e-42 176.0 156 60.9
CDE08G0791 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 3.7e-42 175.6 137 63.5
Sc02g0000410 Simmondsia chinensis HOM05D007282 ORTHO05D009214 4.8e-42 175.3 182 53.3
PGSC0003DMG400008863 Solanum tuberosum HOM05D007282 ORTHO05D009214 4.8e-42 175.3 164 57.9
Medtr1g059660 Medicago truncatula HOM05D007282 ORTHO05D009214 8.2e-42 174.5 186 56.5
Sopen09g004860 Solanum pennellii HOM05D007282 ORTHO05D009214 9.1e-41 171.0 155 59.4
Solyc09g010120.2 Solanum lycopersicum HOM05D007282 ORTHO05D009214 1.5e-40 170.2 155 60.0
BcaC02g07630 Brassica carinata HOM05D007282 ORTHO05D009214 7.7e-40 167.9 125 65.6
BolC4t27996H Brassica oleracea HOM05D007282 ORTHO05D009214 7.7e-40 167.9 125 65.6
AUR62036998 Chenopodium quinoa HOM05D007282 ORTHO05D009214 1.0e-39 167.5 197 50.3
Sp4g18380 Schrenkiella parvula HOM05D007282 ORTHO05D009214 1.3e-39 167.2 125 65.6
DCAR_013409 Daucus carota HOM05D007282 ORTHO05D009214 2.2e-39 166.4 174 52.9
Thhalv10017280m.g Eutrema salsugineum HOM05D007282 ORTHO05D009214 2.9e-39 166.0 125 65.6
THA.LOC104799754 Tarenaya hassleriana HOM05D007282 ORTHO05D009214 2.9e-39 166.0 124 69.4
A04p27670 Brassica napus HOM05D000972 ORTHO05D009214 3.8e-39 165.6 124 66.1
BraA04t18262Z Brassica rapa HOM05D000972 ORTHO05D001783 3.8e-39 165.6 124 66.1
CDE08G0228 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 5.0e-39 165.2 120 68.3
BcaB06g28919 Brassica carinata HOM05D000972 ORTHO05D001783 6.5e-39 164.9 124 64.5
Aa31LG5G21280 Aethionema arabicum HOM05D007282 ORTHO05D009214 1.9e-38 163.3 123 65.0
CARHR130380 Cardamine hirsuta HOM05D007282 ORTHO05D009214 1.9e-38 163.3 122 68.0
AT2G36145 Arabidopsis thaliana HOM05D007282 ORTHO05D009214 5.5e-38 161.8 124 66.1
CDE02G2307 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 5.5e-38 161.8 159 54.1
AL4G32230 Arabidopsis lyrata HOM05D007282 ORTHO05D009214 2.1e-37 159.8 124 65.3
AUR62006220 Chenopodium quinoa HOM05D007282 ORTHO05D009214 2.7e-37 159.5 196 48.0
Hund03936 Selenicereus undatus HOM05D007282 ORTHO05D009214 1.0e-36 157.5 180 50.0
COL.COLO4_03547 Corchorus olitorius HOM05D007282 ORTHO05D009214 6.7e-36 154.8 156 57.1
Carub.0004s1791 Capsella rubella HOM05D007282 ORTHO05D009214 8.8e-36 154.5 121 63.6
Hma1.2p1_0769F.1_g215760 Hydrangea macrophylla HOM05D007282 ORTHO05D009214 2.0e-35 153.3 138 60.9
C04p65190 Brassica napus HOM05D007282 ORTHO05D009214 1.8e-33 146.7 127 60.6
arahy.Tifrunner.gnm1.ann1.LMCN1R Arachis hypogaea HOM05D007282 ORTHO05D009214 3.1e-33 146.0 176 49.4
arahy.Tifrunner.gnm1.ann1.TUP4W7 Arachis hypogaea HOM05D007282 ORTHO05D009214 3.1e-33 146.0 176 49.4
Pp3c14_14160 Physcomitrium patens HOM05D007282 ORTHO05D009214 1.7e-31 140.2 136 52.2
MD14G1029600 Malus domestica HOM05D007282 ORTHO05D009214 3.8e-31 139.0 81 84.0
EL10Ac7g16881 Beta vulgaris HOM05D007282 ORTHO05D009214 1.1e-30 137.5 200 45.5
MD12G1029300 Malus domestica HOM05D007282 ORTHO05D009214 1.1e-30 137.5 81 82.7
Nitab4.5_0001875g0020 Nicotiana tabacum HOM05D007282 ORTHO05D009214 2.5e-30 136.3 143 54.5
AagrBONN_evm.TU.Sc2ySwM_344.5307 Anthoceros agrestis HOM05D007282 ORTHO05D009214 5.5e-30 135.2 130 52.3
SMO353G0249 Selaginella moellendorffii HOM05D007282 ORTHO05D009214 3.3e-27 125.9 128 51.6
Ca_22305_v3 Cicer arietinum L. HOM05D007282 ORTHO05D009214 1.1e-25 120.9 83 73.5
Mapoly0153s0036 Marchantia polymorpha HOM05D007282 ORTHO05D009214 1.8e-25 120.2 139 46.8
Aqoxy1G00013 Aquilegia oxysepala HOM05D007282 ORTHO05D009214 1.9e-22 110.2 85 65.9
Aqoxy2G01255 Aquilegia oxysepala HOM05D007282 ORTHO05D009214 5.5e-22 108.6 85 64.7
DCAR_031561 Daucus carota HOM05D007282 ORTHO05D009214 3.4e-19 99.4 83 57.8
MD12G1029500 Malus domestica HOM05D007282 ORTHO05D009214 2.8e-18 96.3 107 58.9
MD14G1029800 Malus domestica HOM05D007282 ORTHO05D009214 1.6e-16 90.5 105 55.2
Actinidia05405 Actinidia chinensis HOM05D005132 ORTHO05D005823 2.0e-08 63.5 51 58.8
PRCOL_00001877 Prasinoderma coloniale HOM05D007282 ORTHO05D009214 6.6e-07 58.5 129 33.3
TAR369G0436 Trochodendron aralioides HOM05D007282 ORTHO05D009214 2.5e-06 56.6 51 54.9


User provided reference genes

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