Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0474611 Rosa chinensis HOM05D007235 ORTHO05D008985 0.0e+00 1565.8 768 100.0
RcHm_v2.0_Chr3g0474651 Rosa chinensis HOM05D007235 ORTHO05D008985 0.0e+00 1480.7 768 94.9
FvH4_6g19352 Fragaria vesca HOM05D007235 ORTHO05D008985 0.0e+00 1468.8 768 93.9
FAN14G3457 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1458.0 768 93.4
FAN02G0370 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1342.0 768 87.8
FAN02G2734 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1222.6 770 76.2
FvH4_6g19350 Fragaria vesca HOM05D007235 ORTHO05D008985 0.0e+00 1219.1 771 76.3
FAN14G5756 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1217.2 771 76.1
Prupe.7G102400 Prunus persica HOM05D007235 ORTHO05D008985 0.0e+00 1211.4 775 76.5
MD12G1029200 Malus domestica HOM05D007235 ORTHO05D008985 0.0e+00 1154.0 776 74.1
Prupe.8G215200 Prunus persica HOM05D007235 ORTHO05D008985 0.0e+00 1087.8 798 70.6
MD10G1176100 Malus domestica HOM05D007235 ORTHO05D008985 0.0e+00 1087.4 789 69.7
Cfa016637 Carpinus fangiana HOM05D007235 ORTHO05D008985 0.0e+00 1084.7 774 70.0
QL07p038338 Quercus lobata HOM05D007235 ORTHO05D008985 4.0e-310 1067.8 773 67.7
Dinv31713 Davidia involucrata HOM05D007235 ORTHO05D008985 1.2e-309 1066.2 779 67.7
Dinv31712 Davidia involucrata HOM05D007235 ORTHO05D008985 2.4e-307 1058.5 779 67.9
Ciclev10011029m.g Citrus clementina HOM05D007235 ORTHO05D008985 3.5e-306 1054.7 773 67.1
GSVIVG01033880001 Vitis vinifera HOM05D007235 ORTHO05D008985 5.0e-305 1050.8 780 65.9
CiPaw.10G011900 Carya illinoinensis HOM05D007235 ORTHO05D008985 8.6e-305 1050.0 766 67.6
Potri.006G210325 Populus trichocarpa HOM05D007235 ORTHO05D008985 2.3e-297 1025.4 772 66.2
Atru.chr8.1458 Acer truncatum HOM05D007235 ORTHO05D008985 1.9e-296 1022.3 776 65.3
Potri.006G210150 Populus trichocarpa HOM05D007235 ORTHO05D008985 1.1e-294 1016.5 773 65.3
TAR623G1371 Trochodendron aralioides HOM05D007235 ORTHO05D008985 2.3e-294 1015.4 788 64.0
Manes.09G053100 Manihot esculenta HOM05D007235 ORTHO05D008985 6.8e-294 1013.8 772 64.8
Haze_19642 Corylus avellana HOM05D007235 ORTHO05D008985 8.3e-292 1006.9 745 68.1
Lj2C141T11 Lonicera japonica HOM05D007235 ORTHO05D008985 2.1e-290 1002.3 770 64.2
Rhsim03G0070500 Rhododendron simsii HOM05D007235 ORTHO05D008985 5.6e-288 994.2 781 63.4
Rhsim03G0072800 Rhododendron simsii HOM05D007235 ORTHO05D008985 2.0e-285 985.7 783 62.8
CSS0040083 Camellia sinensis var. sinensis HOM05D007235 ORTHO05D008985 9.2e-283 976.9 773 62.7
Sabra06G0161900 Salix brachista HOM05D007235 ORTHO05D008985 6.0e-282 974.2 769 64.0
Duzib093G1209 Durio zibethinus HOM05D007235 ORTHO05D008985 1.7e-281 972.6 777 62.4
Duzib106G1334 Durio zibethinus HOM05D007235 ORTHO05D008985 8.6e-281 970.3 777 62.5
CSS0010120 Camellia sinensis var. sinensis HOM05D007235 ORTHO05D008985 3.1e-278 961.8 772 63.3
CSS0012377 Camellia sinensis var. sinensis HOM05D007235 ORTHO05D008985 8.9e-278 960.3 772 63.2
TWI74G0874 Tripterygium wilfordii HOM05D007235 ORTHO05D008985 7.6e-277 957.2 776 61.7
TWI74G1128 Tripterygium wilfordii HOM05D007235 ORTHO05D008985 8.4e-276 953.7 775 61.2
Actinidia05406 Actinidia chinensis HOM05D007235 ORTHO05D008985 2.5e-272 942.2 778 62.3
ClCG04G010150 Citrullus lanatus HOM05D007235 ORTHO05D008985 3.3e-272 941.8 780 61.0
Gorai.002G238500 Gossypium raimondii HOM05D007235 ORTHO05D008985 2.8e-271 938.7 759 61.7
PSO339G1765 Papaver somniferum HOM05D007235 ORTHO05D008985 6.2e-271 937.6 731 63.3
PSO801G0111 Papaver somniferum HOM05D007235 ORTHO05D008985 5.3e-270 934.5 773 61.1
Aqoxy2G01105 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 3.8e-268 928.3 787 58.8
MELO3C024556.2 Cucumis melo HOM05D007235 ORTHO05D008985 3.8e-268 928.3 779 60.3
Sed0026179 Sechium edule HOM05D007235 ORTHO05D008985 4.9e-268 927.9 783 60.5
CsaV3_6G040770 Cucumis sativus L. HOM05D007235 ORTHO05D008985 2.7e-266 922.2 779 60.1
Aqoxy2G01076 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 3.0e-265 918.7 784 58.3
Lsat_1_v5_gn_9_21080 Lactuca sativa HOM05D007235 ORTHO05D008985 2.6e-261 905.6 766 59.3
Rhsim03G0070400 Rhododendron simsii HOM05D007235 ORTHO05D008985 2.9e-260 902.1 751 61.1
Gohir.A01G204950 Gossypium hirsutum HOM05D007235 ORTHO05D008985 6.4e-260 901.0 759 59.7
SalBow3G3787 Salvia bowleyana HOM05D007235 ORTHO05D008985 1.1e-259 900.2 770 59.1
PSO801G0535 Papaver somniferum HOM05D007235 ORTHO05D008985 3.0e-257 892.1 777 58.8
SalBow3G1230 Salvia bowleyana HOM05D007235 ORTHO05D008985 2.0e-253 879.4 768 57.8
Cc06_g21800 Coffea canephora HOM05D007235 ORTHO05D008985 4.6e-250 868.2 794 56.4
ATR0820G239 Amborella trichopoda HOM05D007235 ORTHO05D008985 3.0e-249 865.5 762 56.8
Cc06_g21890 Coffea canephora HOM05D007235 ORTHO05D008985 8.2e-247 857.4 758 57.5
Migut.J01009 Erythranthe guttata HOM05D007235 ORTHO05D008985 8.2e-247 857.4 766 56.7
Gohir.D01G194350 Gossypium hirsutum HOM05D007235 ORTHO05D008985 1.8e-246 856.3 679 62.0
HPP92_006812 Vanilla planifolia HOM05D007235 ORTHO05D008985 1.3e-239 833.6 786 53.8
Migut.J01008 Erythranthe guttata HOM05D007235 ORTHO05D008985 8.2e-239 830.9 782 55.9
DCAR_007760 Daucus carota HOM05D007235 ORTHO05D008985 1.7e-231 806.6 774 53.6
DCAR_013408 Daucus carota HOM05D007235 ORTHO05D008985 1.2e-229 800.4 763 54.5
SEGI_15434 Sequoiadendron giganteum HOM05D007235 ORTHO05D008985 2.0e-221 773.1 825 50.4
MBI17_g35889_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 4.7e-218 761.9 808 50.9
MBI17_g41037_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 7.4e-216 754.6 676 57.8
SEGI_22450 Sequoiadendron giganteum HOM05D007235 ORTHO05D008985 2.7e-181 639.8 805 44.8
TAR623G0688 Trochodendron aralioides HOM05D007235 ORTHO05D008985 3.9e-180 636.0 479 64.7
AagrBONN_evm.TU.Sc2ySwM_228.2009 Anthoceros agrestis HOM05D007235 ORTHO05D008985 1.9e-171 607.1 745 43.1
Haze_19643 Corylus avellana HOM05D007235 ORTHO05D008985 3.3e-171 606.3 508 62.4
Atru.chr8.1456 Acer truncatum HOM05D007235 ORTHO05D008985 5.2e-169 599.0 469 63.1
Mapoly0090s0057 Marchantia polymorpha HOM05D007235 ORTHO05D008985 2.0e-160 570.5 787 40.4
Lj7C625T8 Lonicera japonica HOM05D007235 ORTHO05D008985 2.7e-157 560.1 467 58.7
Aqoxy2G01078 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 4.0e-153 546.2 464 59.1
QL07p038322 Quercus lobata HOM05D007235 ORTHO05D008985 7.1e-134 482.3 351 67.5
Hma1.2p1_0769F.1_g215770 Hydrangea macrophylla HOM05D007235 ORTHO05D008985 2.1e-125 454.1 383 60.1
Lj7A625G73 Lonicera japonica HOM05D007235 ORTHO05D008985 2.1e-109 401.0 284 71.1
Atru.chr8.1457 Acer truncatum HOM05D007235 ORTHO05D008985 2.6e-104 384.0 281 68.0
Aqoxy2G01077 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 3.2e-102 377.1 318 58.8
RcHm_v2.0_Chr3g0474591 Rosa chinensis HOM05D007235 ORTHO05D008985 8.0e-101 372.5 240 76.2
MBI17_g48244_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 1.0e-95 355.5 352 53.4
QL07p038324 Quercus lobata HOM05D007235 ORTHO05D008985 3.2e-86 323.9 236 68.6
COL.COLO4_29681 Corchorus olitorius HOM05D007235 ORTHO05D008985 9.1e-81 305.8 269 58.4
COL.COLO4_29682 Corchorus olitorius HOM05D007235 ORTHO05D008985 2.5e-78 297.7 205 70.7
Cfa021070 Carpinus fangiana HOM05D007235 ORTHO05D008985 5.2e-76 290.0 204 70.6
Haze_19644 Corylus avellana HOM05D007235 ORTHO05D008985 9.8e-75 285.8 229 62.9
COL.COLO4_29683 Corchorus olitorius HOM05D007235 ORTHO05D008985 1.5e-70 271.9 267 53.6
COL.COLO4_29684 Corchorus olitorius HOM05D002712 ORTHO05D007713 9.2e-49 199.5 140 72.9
MBI17_g48245_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 3.5e-40 171.0 141 62.4
Cfa009503 Carpinus fangiana HOM05D007235 ORTHO05D008985 3.8e-26 124.4 624 22.9
MD14G1029500 Malus domestica HOM05D007235 ORTHO05D008985 6.5e-18 97.1 53 86.8
MBI17_g41038_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 9.3e-09 66.6 46 60.9
CsaV3_3G028130 Cucumis sativus L. HOM05D001324 ORTHO05D001220 1.0e-07 63.2 137 32.1
Hma1.2p1_0112F.1_g054310 Hydrangea macrophylla HOM05D001324 ORTHO05D001220 2.3e-07 62.0 134 29.1
QL06p019705 Quercus lobata HOM05D001324 ORTHO05D001220 2.3e-07 62.0 130 28.5
CsaV3_3G011920 Cucumis sativus L. HOM05D001324 ORTHO05D001220 3.9e-07 61.2 126 31.7
Duzib212G0882 Durio zibethinus HOM05D001324 ORTHO05D001220 3.9e-07 61.2 138 31.2
Oeu064642.2 Olea europaea HOM05D001324 ORTHO05D001220 5.1e-07 60.8 137 30.7
vmacro02693 Vaccinium macrocarpon HOM05D001324 ORTHO05D001220 5.1e-07 60.8 137 29.9
ClCG07G001210 Citrullus lanatus HOM05D001324 ORTHO05D001220 6.7e-07 60.5 141 31.9
Gohir.D09G229800 Gossypium hirsutum HOM05D001324 ORTHO05D001220 8.7e-07 60.1 128 28.9
Gorai.006G252500 Gossypium raimondii HOM05D001324 ORTHO05D001220 8.7e-07 60.1 128 28.9
TPR.G10078 Trifolium pratense HOM05D001324 ORTHO05D001220 8.7e-07 60.1 128 28.9
MELO3C006405.2 Cucumis melo HOM05D001324 ORTHO05D001220 1.1e-06 59.7 126 31.0
Nn3g19722 Nelumbo nucifera HOM05D001324 ORTHO05D001220 1.1e-06 59.7 140 28.6
Sed0013034 Sechium edule HOM05D001324 ORTHO05D001220 1.1e-06 59.7 126 31.7
Lsat_1_v5_gn_2_39781 Lactuca sativa HOM05D001324 ORTHO05D001220 1.5e-06 59.3 128 28.1
Rhsim13G0037900 Rhododendron simsii HOM05D001324 ORTHO05D001220 1.5e-06 59.3 136 28.7
RcHm_v2.0_Chr4g0394301 Rosa chinensis HOM05D001324 ORTHO05D001220 1.5e-06 59.3 139 27.3
Thecc.04G259200 Theobroma cacao HOM05D001324 ORTHO05D001220 1.5e-06 59.3 137 27.0
Cfa014744 Carpinus fangiana HOM05D001324 ORTHO05D001220 1.9e-06 58.9 134 28.4
Cfa014745 Carpinus fangiana HOM05D001324 ORTHO05D001220 1.9e-06 58.9 134 28.4
CiPaw.02G109200 Carya illinoinensis HOM05D001324 ORTHO05D001220 1.9e-06 58.9 133 28.6
FAN17G0317 Fragaria x ananassa HOM05D001324 ORTHO05D001220 1.9e-06 58.9 83 33.7
QL09p040231 Quercus lobata HOM05D001324 ORTHO05D001220 1.9e-06 58.9 134 30.6
PSO832G1769 Papaver somniferum HOM05D001324 ORTHO05D001220 2.5e-06 58.5 139 26.6
Cpa.g.sc44.31 Carica papaya HOM05D001324 ORTHO05D001220 3.3e-06 58.2 130 27.7
MELO3C012854.2 Cucumis melo HOM05D001324 ORTHO05D001220 4.3e-06 57.8 137 30.7
FvH4_2g21000 Fragaria vesca HOM05D001324 ORTHO05D001220 4.3e-06 57.8 136 27.9
FAN24G1405 Fragaria x ananassa HOM05D001324 ORTHO05D001220 4.3e-06 57.8 136 27.9
Lsat_1_v5_gn_2_39940 Lactuca sativa HOM05D001324 ORTHO05D001220 4.3e-06 57.8 128 28.9
Lalb_Chr02g0150301 Lupinus albus HOM05D001324 ORTHO05D001220 4.3e-06 57.8 128 29.7
Nitab4.5_0000596g0030 Nicotiana tabacum HOM05D001324 ORTHO05D001220 4.3e-06 57.8 137 30.7
Carub.0007s1210 Capsella rubella HOM05D001324 ORTHO05D001220 5.7e-06 57.4 136 30.1
Gorai.001G179800 Gossypium raimondii HOM05D001324 ORTHO05D001220 5.7e-06 57.4 130 29.2
HanXRQChr09g0264571 Helianthus annuus HOM05D001324 ORTHO05D001220 5.7e-06 57.4 128 29.7
Lj5g0005408 Lotus japonicus HOM05D001324 ORTHO05D001220 5.7e-06 57.4 128 28.9
Nitab4.5_0000044g0590 Nicotiana tabacum HOM05D001324 ORTHO05D001220 5.7e-06 57.4 137 30.7
Gohir.A07G150400 Gossypium hirsutum HOM05D001324 ORTHO05D001220 7.4e-06 57.0 130 29.2
Lsat_1_v5_gn_2_39740 Lactuca sativa HOM05D001324 ORTHO05D001220 7.4e-06 57.0 128 28.1
Hund03056 Selenicereus undatus HOM05D001324 ORTHO05D001220 7.4e-06 57.0 143 30.8
FAN20G0642 Fragaria x ananassa HOM05D001324 ORTHO05D001220 9.7e-06 56.6 134 28.4
Gohir.D07G156800 Gossypium hirsutum HOM05D001324 ORTHO05D001220 9.7e-06 56.6 130 29.2


User provided reference genes

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