Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0474021 Rosa chinensis HOM05D002400 ORTHO05D002568 1.3e-76 289.7 143 100.0
RcHm_v2.0_Chr3g0474001 Rosa chinensis HOM05D002400 ORTHO05D002568 2.0e-61 239.2 141 83.7
FAN02G4410 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.4e-59 233.0 140 81.4
FvH4_6g19020 Fragaria vesca HOM05D002400 ORTHO05D002568 1.6e-58 229.6 140 79.3
FAN09G1471 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-57 226.1 140 81.4
FAN05G4425 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.5e-57 223.8 138 79.0
FAN09G2665 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.0e-54 216.9 137 78.8
FvH4_6g19010 Fragaria vesca HOM05D002400 ORTHO05D002568 4.0e-54 214.9 138 77.5
FAN02G2106 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.3e-52 207.6 135 76.3
FAN14G3084 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.3e-49 199.9 126 79.4
MD14G1025100 Malus domestica HOM05D002400 ORTHO05D002568 5.9e-34 147.9 133 55.6
MD00G1221800 Malus domestica HOM05D002400 ORTHO05D002568 1.1e-32 143.7 132 55.3
MD14G1024900 Malus domestica HOM05D002400 ORTHO05D002568 6.1e-31 137.9 134 54.5
RcHm_v2.0_Chr3g0474091 Rosa chinensis HOM05D002400 ORTHO05D002568 1.5e-29 133.3 131 51.9
MD04G1058800 Malus domestica HOM05D002400 ORTHO05D002568 2.0e-29 132.9 133 51.1
MD12G1026500 Malus domestica HOM05D002400 ORTHO05D002568 2.0e-29 132.9 121 56.2
MD14G1026600 Malus domestica HOM05D002400 ORTHO05D002568 3.4e-29 132.1 133 49.6
RcHm_v2.0_Chr3g0474111 Rosa chinensis HOM05D002400 ORTHO05D002568 7.5e-29 131.0 127 54.3
RcHm_v2.0_Chr3g0474191 Rosa chinensis HOM05D002400 ORTHO05D002568 1.7e-28 129.8 126 56.3
FAN08G1360 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.3e-28 127.5 135 48.9
Prupe.7G105900 Prunus persica HOM05D002400 ORTHO05D002568 8.3e-28 127.5 135 51.9
MD12G1026800 Malus domestica HOM05D002400 ORTHO05D002568 1.1e-27 127.1 134 49.3
MD14G1025200 Malus domestica HOM05D002400 ORTHO05D002568 2.4e-27 125.9 124 50.8
Prupe.7G105500 Prunus persica HOM05D002400 ORTHO05D002568 4.1e-27 125.2 134 48.5
RcHm_v2.0_Chr3g0474031 Rosa chinensis HOM05D002400 ORTHO05D002568 4.1e-27 125.2 136 50.7
RcHm_v2.0_Chr3g0475381 Rosa chinensis HOM05D002400 ORTHO05D002568 5.4e-27 124.8 133 45.9
FAN18G1895 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.2e-26 123.6 121 55.4
RcHm_v2.0_Chr7g0205961 Rosa chinensis HOM05D002400 ORTHO05D002568 2.0e-26 122.9 137 48.2
Prupe.7G105000 Prunus persica HOM05D002400 ORTHO05D002568 3.5e-26 122.1 135 48.9
FAN18G4571 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.6e-26 121.7 138 48.6
MD14G1025300 Malus domestica HOM05D002400 ORTHO05D002568 4.6e-26 121.7 131 53.4
MD14G1024100 Malus domestica HOM05D002400 ORTHO05D002568 1.0e-25 120.6 137 46.0
RcHm_v2.0_Chr7g0205891 Rosa chinensis HOM05D002400 ORTHO05D002568 1.0e-25 120.6 135 48.9
MD14G1025400 Malus domestica HOM05D002400 ORTHO05D002568 1.3e-25 120.2 131 52.7
MD14G1025600 Malus domestica HOM05D002400 ORTHO05D002568 1.3e-25 120.2 132 47.7
Prupe.7G106200 Prunus persica HOM05D002400 ORTHO05D002568 1.3e-25 120.2 123 52.0
FvH4_5g20530 Fragaria vesca HOM05D002400 ORTHO05D002568 1.7e-25 119.8 138 48.6
FvH4_6g33920 Fragaria vesca HOM05D002400 ORTHO05D002568 1.7e-25 119.8 128 50.8
FAN14G5626 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-25 119.8 128 50.8
FvH4_5g26390 Fragaria vesca HOM05D002400 ORTHO05D002568 5.0e-25 118.2 133 43.6
FvH4_6g19030 Fragaria vesca HOM05D002400 ORTHO05D002568 1.1e-24 117.1 136 47.1
Prupe.7G108600 Prunus persica HOM05D002400 ORTHO05D002568 2.5e-24 115.9 130 48.5
RcHm_v2.0_Chr3g0473911 Rosa chinensis HOM05D002400 ORTHO05D002568 2.5e-24 115.9 131 48.1
RcHm_v2.0_Chr3g0475391 Rosa chinensis HOM05D002400 ORTHO05D002568 2.5e-24 115.9 131 46.6
FAN05G4159 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.6e-24 114.8 131 48.1
RcHm_v2.0_Chr3g0474171 Rosa chinensis HOM05D002400 ORTHO05D002568 5.6e-24 114.8 129 46.5
RcHm_v2.0_Chr7g0217271 Rosa chinensis HOM05D002400 ORTHO05D002568 5.6e-24 114.8 133 44.4
FAN14G2096 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.2e-23 113.6 132 47.7
FvH4_1g23521 Fragaria vesca HOM05D002400 ORTHO05D002568 1.6e-23 113.2 135 43.0
FvH4_5g26410 Fragaria vesca HOM05D002400 ORTHO05D002568 4.7e-23 111.7 133 42.9
FvH4_6g18954 Fragaria vesca HOM05D002400 ORTHO05D002568 4.7e-23 111.7 125 48.0
RcHm_v2.0_Chr3g0474041 Rosa chinensis HOM05D002400 ORTHO05D002568 6.2e-23 111.3 132 48.5
FvH4_6g19040 Fragaria vesca HOM05D002400 ORTHO05D002568 1.1e-22 110.5 132 47.7
MD14G1026700 Malus domestica HOM05D002400 ORTHO05D002568 2.3e-22 109.4 163 42.3
FvH4_6g33960 Fragaria vesca HOM05D002400 ORTHO05D002568 3.1e-22 109.0 129 43.4
FAN18G2424 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.1e-22 109.0 133 42.1
Prupe.7G106400 Prunus persica HOM05D002400 ORTHO05D002568 4.0e-22 108.6 127 51.2
FvH4_6g18920 Fragaria vesca HOM05D002400 ORTHO05D002568 5.2e-22 108.2 131 45.8
Prupe.6G311500 Prunus persica HOM05D002400 ORTHO05D002568 5.2e-22 108.2 138 44.2
FAN08G0492 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.8e-22 107.8 105 52.4
MD14G1026400 Malus domestica HOM05D002400 ORTHO05D002568 6.8e-22 107.8 131 47.3
MD12G1202000 Malus domestica HOM05D002400 ORTHO05D002568 1.2e-21 107.1 132 46.2
FAN06G0647 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.3e-20 103.6 142 44.4
MD14G1026300 Malus domestica HOM05D002400 ORTHO05D002568 1.7e-20 103.2 133 45.9
FvH4_6g33902 Fragaria vesca HOM05D002400 ORTHO05D002568 3.7e-20 102.1 130 41.5
Prupe.2G052100 Prunus persica HOM05D002400 ORTHO05D002568 6.4e-20 101.3 132 47.0
FvH4_7g12363 Fragaria vesca HOM05D002400 ORTHO05D002568 8.3e-20 100.9 109 49.5
FAN04G0043 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.3e-20 100.9 105 49.5
FvH4_6g18982 Fragaria vesca HOM05D002400 ORTHO05D002568 1.9e-19 99.8 138 42.0
FAN18G0377 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.9e-19 99.8 134 44.8
FAN06G2837 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.4e-19 99.4 135 43.7
MD14G1026000 Malus domestica HOM05D002400 ORTHO05D002568 4.1e-19 98.6 130 40.8
FAN14G4887 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.4e-19 98.2 117 44.4
RcHm_v2.0_Chr1g0330111 Rosa chinensis HOM05D002400 ORTHO05D002568 9.2e-19 97.4 140 45.7
vmacro05682 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 1.2e-18 97.1 124 43.5
FAN18G0503 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.1e-18 96.3 99 47.5
FvH4_6g18952 Fragaria vesca HOM05D002400 ORTHO05D002568 2.7e-18 95.9 135 39.3
Prupe.6G269600 Prunus persica HOM05D002400 ORTHO05D002568 3.5e-18 95.5 101 53.5
vmacro12123 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 6.0e-18 94.7 124 44.4
MD14G1025800 Malus domestica HOM05D002400 ORTHO05D002568 1.0e-17 94.0 134 41.8
RcHm_v2.0_Chr3g0473961 Rosa chinensis HOM05D002400 ORTHO05D002568 1.7e-17 93.2 137 43.8
FAN06G5021 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.0e-17 92.4 109 45.9
MD14G1157200 Malus domestica HOM05D002400 ORTHO05D002568 3.0e-17 92.4 147 41.5
FAN02G2515 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.1e-16 90.5 130 42.3
MD12G1201900 Malus domestica HOM05D002400 ORTHO05D002568 1.1e-16 90.5 142 40.8
FAN09G3427 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.9e-16 89.7 130 43.1
FvH4_6g22710 Fragaria vesca HOM05D002400 ORTHO05D002568 2.5e-16 89.4 130 41.5
FvH4_5g32301 Fragaria vesca HOM05D002400 ORTHO05D002568 3.3e-16 89.0 140 38.6
FAN18G0208 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.3e-16 89.0 133 39.1
MD12G1217700 Malus domestica HOM05D002400 ORTHO05D002568 3.3e-16 89.0 144 39.6
RcHm_v2.0_Chr3g0474141 Rosa chinensis HOM05D002400 ORTHO05D002568 3.3e-16 89.0 89 52.8
FAN14G2794 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.3e-16 88.6 130 41.5
FAN05G0221 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.6e-16 88.2 130 41.5
FAN13G3133 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.3e-16 87.8 85 49.4
MD12G1217800 Malus domestica HOM05D002400 ORTHO05D002568 9.5e-16 87.4 135 37.8
FAN14G4031 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.6e-15 86.7 82 51.2
FvH4_7g04740 Fragaria vesca HOM05D002400 ORTHO05D002568 2.8e-15 85.9 103 44.7
FAN02G3141 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.8e-15 85.9 115 39.1
FAN03G0307 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.8e-15 85.9 103 44.7
FAN06G1414 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.8e-15 85.9 103 44.7
FvH4_6g08300 Fragaria vesca HOM05D002400 ORTHO05D002568 3.6e-15 85.5 115 38.3
FAN14G3017 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.6e-15 85.5 115 38.3
FAN14G5260 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.6e-15 85.5 130 40.8
RcHm_v2.0_Chr3g0474131 Rosa chinensis HOM05D002400 ORTHO05D002568 3.6e-15 85.5 83 51.8
FAN09G1480 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.7e-15 85.1 115 38.3
RcHm_v2.0_Chr3g0458171 Rosa chinensis HOM05D002400 ORTHO05D002568 4.7e-15 85.1 131 35.1
FAN14G5775 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.1e-15 84.3 131 38.9
FAN14G5794 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.1e-14 84.0 90 48.9
Prupe.1G551800 Prunus persica HOM05D002400 ORTHO05D002568 1.1e-14 84.0 134 39.6
RcHm_v2.0_Chr3g0474161 Rosa chinensis HOM05D002400 ORTHO05D002568 1.1e-14 84.0 85 49.4
FAN04G1411 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.4e-14 83.6 126 40.5
FvH4_6g19090 Fragaria vesca HOM05D002400 ORTHO05D002568 2.3e-14 82.8 108 42.6
MD04G1145400 Malus domestica HOM05D002400 ORTHO05D002568 2.3e-14 82.8 100 47.0
Prupe.7G104800 Prunus persica HOM05D002400 ORTHO05D002568 2.3e-14 82.8 79 54.4
FvH4_6g19051 Fragaria vesca HOM05D002400 ORTHO05D002568 3.1e-14 82.4 132 37.9
FAN05G1596 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.1e-14 82.4 117 35.9
RcHm_v2.0_Chr5g0069001 Rosa chinensis HOM05D002400 ORTHO05D002568 3.1e-14 82.4 186 33.9
FvH4_6g19370 Fragaria vesca HOM05D002400 ORTHO05D002568 4.0e-14 82.0 131 38.2
FAN05G2917 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.0e-14 82.0 153 35.3
FvH4_6g18950 Fragaria vesca HOM05D002400 ORTHO05D002568 5.2e-14 81.6 133 32.3
FAN14G5714 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.8e-14 81.3 120 40.8
MD12G1025400 Malus domestica HOM05D002400 ORTHO05D002568 8.9e-14 80.9 122 40.2
FvH4_6g18911 Fragaria vesca HOM05D002400 ORTHO05D002568 1.2e-13 80.5 153 35.3
FvH4_6g19361 Fragaria vesca HOM05D002400 ORTHO05D002568 1.2e-13 80.5 120 40.0
FAN05G1294 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.2e-13 80.5 100 41.0
FAN06G4070 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.2e-13 80.5 128 38.3
FAN09G4054 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.2e-13 80.5 104 44.2
Prupe.5G196300 Prunus persica HOM05D002400 ORTHO05D002568 2.0e-13 79.7 83 45.8
RcHm_v2.0_Chr3g0481121 Rosa chinensis HOM05D002400 ORTHO05D002568 1.3e-12 77.0 125 37.6
FvH4_6g05280 Fragaria vesca HOM05D002400 ORTHO05D002568 1.7e-12 76.6 127 40.2
FAN05G1326 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-12 76.6 133 32.3
FAN14G3389 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-12 76.6 127 40.2
FAN14G5637 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-12 76.6 127 40.2
RcHm_v2.0_Chr5g0068981 Rosa chinensis HOM05D002400 ORTHO05D002568 1.7e-12 76.6 171 29.8
FvH4_6g18961 Fragaria vesca HOM05D002400 ORTHO05D002568 2.9e-12 75.9 194 30.4
FAN05G2337 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.9e-12 75.1 115 40.9
FAN10G1459 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.9e-11 73.2 100 41.0
MD02G1269000 Malus domestica HOM05D002400 ORTHO05D002568 1.9e-11 73.2 81 49.4
FAN04G2586 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.4e-11 72.8 80 47.5
FAN19G0352 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.4e-11 72.8 80 42.5
FvH4_5g29160 Fragaria vesca HOM05D002400 ORTHO05D002568 4.1e-11 72.0 147 33.3
FvH4_7g09171 Fragaria vesca HOM05D000003 ORTHO05D002568 4.1e-11 72.0 76 50.0
FAN09G3087 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.1e-11 72.0 85 40.0
MD04G1145900 Malus domestica HOM05D002400 ORTHO05D002568 4.1e-11 72.0 101 47.5
RcHm_v2.0_Chr3g0474181 Rosa chinensis HOM05D002400 ORTHO05D002568 4.1e-11 72.0 70 51.4
FvH4_5g20611 Fragaria vesca HOM05D002400 ORTHO05D002568 5.4e-11 71.6 65 52.3
vmacro05683 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 1.6e-10 70.1 143 33.6
vmacro12117 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 1.6e-10 70.1 125 36.0
Dinv05457 Davidia involucrata HOM05D002400 ORTHO05D002568 2.1e-10 69.7 111 37.8
FAN04G1392 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.1e-10 69.7 147 32.7
FAN18G0337 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.1e-10 69.7 140 35.7
Manes.09G032300 Manihot esculenta HOM05D002400 ORTHO05D002568 2.7e-10 69.3 106 37.7
FAN08G3505 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.6e-10 68.6 120 38.3
MD04G1145500 Malus domestica HOM05D002400 ORTHO05D002568 6.0e-10 68.2 153 35.3
QL02p059625 Quercus lobata HOM05D002400 ORTHO05D002568 1.0e-09 67.4 92 42.4
Dinv02723 Davidia involucrata HOM05D002400 ORTHO05D002568 8.6e-09 64.3 110 36.4
Dinv02727 Davidia involucrata HOM05D002400 ORTHO05D002568 1.9e-08 63.2 111 34.2
MD14G1026200 Malus domestica HOM05D002400 ORTHO05D002568 3.3e-08 62.4 74 47.3
TWI60G1609 Tripterygium wilfordii HOM05D002400 ORTHO05D002568 3.3e-08 62.4 98 38.8
TWI81G0137 Tripterygium wilfordii HOM05D002400 ORTHO05D002568 3.3e-08 62.4 100 34.0
FvH4_5g31730 Fragaria vesca HOM05D002400 ORTHO05D002568 4.3e-08 62.0 93 39.8
FAN09G0521 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.6e-08 61.6 99 37.4
Dinv05456 Davidia involucrata HOM05D002400 ORTHO05D002568 9.5e-08 60.8 111 33.3
FAN04G3210 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.5e-08 60.8 82 41.5
Haze_04784 Corylus avellana HOM05D002400 ORTHO05D002568 1.6e-07 60.1 120 35.8
Duzib132G1153 Durio zibethinus HOM05D002400 ORTHO05D002568 2.8e-07 59.3 138 29.7
FAN05G0305 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.6e-07 58.9 76 40.8
FAN15G2585 Fragaria x ananassa HOM05D045789 ORTHO05D002568 3.6e-07 58.9 56 48.2
FAN15G2963 Fragaria x ananassa HOM05D045789 ORTHO05D002568 3.6e-07 58.9 56 48.2
Cfa005421 Carpinus fangiana HOM05D002400 ORTHO05D002568 1.4e-06 57.0 106 37.7
FAN05G2957 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.8e-06 56.6 71 42.3
FAN26G2620 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.4e-06 56.2 87 41.4
FAN08G3191 Fragaria x ananassa HOM05D002400 ORTHO05D045931 4.0e-06 55.5 47 53.2
FAN09G4576 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.8e-06 54.7 55 50.9
FAN14G2111 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.8e-06 54.7 64 40.6
MD15G1012200 Malus domestica HOM05D002400 ORTHO05D002568 6.8e-06 54.7 97 37.1


User provided reference genes

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