Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 1.4e-140 503.8 480 100.0
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 4.8e-112 409.1 481 89.2
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 5.1e-98 362.5 479 80.2
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 4.1e-79 299.7 222 67.6
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 2.2e-72 277.3 222 64.0
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 1.2e-70 271.6 224 59.8
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 8.0e-67 258.8 181 63.5
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 5.2e-66 256.1 166 68.7
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 8.9e-66 255.4 207 59.9
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 3.4e-65 253.4 217 56.7
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 9.8e-65 251.9 210 57.6
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 3.7e-64 250.0 222 56.3
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 2.4e-63 247.3 221 57.9
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 4.1e-63 246.5 226 54.9
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 1.2e-62 245.0 214 57.0
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 1.6e-62 244.6 218 59.2
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 1.6e-62 244.6 220 60.0
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 2.7e-62 243.8 220 59.5
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 2.7e-62 243.8 218 59.6
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 4.6e-62 243.0 217 53.9
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 7.8e-62 242.3 223 54.7
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 1.3e-61 241.5 166 65.1
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 3.0e-61 240.4 218 58.3
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 6.6e-61 239.2 184 60.9
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 6.6e-61 239.2 210 57.6
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 8.6e-61 238.8 219 58.9
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 1.9e-60 237.7 209 56.9
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 2.1e-59 234.2 215 56.3
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 2.8e-59 233.8 227 51.5
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 3.6e-59 233.4 223 54.3
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 3.6e-59 233.4 228 53.9
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 1.0e-58 231.9 215 53.0
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.8e-58 231.1 171 62.6
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 4.0e-58 229.9 171 62.0
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 5.2e-58 229.6 184 61.4
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 5.2e-58 229.6 221 54.8
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 1.5e-57 228.0 216 54.2
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 2.6e-57 227.3 214 56.5
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 7.5e-57 225.7 176 58.5
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 3.7e-56 223.4 222 51.4
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 1.4e-55 221.5 207 51.7
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 2.4e-55 220.7 181 58.0
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 4.1e-55 219.9 217 53.9
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 2.0e-54 217.6 223 50.7
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 2.7e-54 217.2 204 52.0
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 2.7e-54 217.2 228 49.6
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 3.5e-54 216.9 365 90.7
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 4.6e-54 216.5 168 60.1
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 1.0e-53 215.3 204 51.5
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 1.3e-53 214.9 206 51.0
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.7e-53 214.5 162 61.7
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 3.0e-53 213.8 226 48.2
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 5.0e-53 213.0 148 66.9
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 8.6e-53 212.2 226 47.8
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 1.1e-52 211.8 229 47.6
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.5e-52 211.5 162 60.5
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 1.9e-52 211.1 201 52.7
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 1.9e-52 211.1 223 50.2
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 1.9e-52 211.1 217 48.4
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 1.9e-52 211.1 170 55.9
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 3.3e-52 210.3 167 59.9
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 4.3e-52 209.9 212 49.1
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 4.3e-52 209.9 212 49.1
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 4.3e-52 209.9 187 58.8
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 7.3e-52 209.1 182 53.8
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 9.5e-52 208.8 167 63.5
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 9.5e-52 208.8 204 53.4
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 1.6e-51 208.0 204 53.4
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 3.6e-51 206.8 182 55.5
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 3.6e-51 206.8 213 49.3
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 3.6e-51 206.8 204 52.9
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 3.1e-50 203.8 184 52.2
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 4.0e-50 203.4 195 52.8
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 6.8e-50 202.6 202 51.0
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 1.2e-49 201.8 221 47.5
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 1.2e-49 201.8 221 47.5
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 3.4e-49 200.3 218 46.8
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 2.9e-48 197.2 201 49.8
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 1.9e-47 194.5 200 50.0
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 2.7e-46 190.7 228 47.4
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 1.3e-45 188.3 223 47.1
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 3.9e-45 186.8 206 49.5
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 8.6e-45 185.7 212 44.8
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 8.6e-45 185.7 208 49.5
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.8e-42 177.9 199 49.7
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 2.3e-42 177.6 185 50.8
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 4.0e-42 176.8 174 53.4
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 9.9e-41 172.2 177 50.3
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 2.2e-40 171.0 191 44.5
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 4.1e-39 166.8 219 42.0
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.2e-38 165.2 215 46.5
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 3.5e-38 163.7 204 42.2
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 4.6e-38 163.3 180 45.6
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.7e-37 161.4 118 63.6
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 1.5e-36 158.3 107 64.5
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 2.8e-35 154.1 107 63.6
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 1.3e-32 145.2 110 61.8
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 4.3e-28 130.2 87 67.8
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 1.3e-27 128.6 107 57.0
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.4e-23 115.2 220 36.8
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 1.6e-22 111.7 107 49.5
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 5.6e-20 103.2 301 92.7
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 3.6e-19 100.5 301 92.0
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.8e-18 98.2 301 92.7
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 2.2e-16 91.3 222 32.4
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 3.5e-14 84.0 207 31.9
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 7.4e-12 76.3 50 62.0
Zm00001eb423490 Zea mays HOM05D006980 ORTHO05D008704 4.8e-11 73.6 54 57.4
Zm00001eb434620 Zea mays HOM05D006980 ORTHO05D008704 4.8e-11 73.6 54 57.4
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 1.0e-08 65.9 194 24.2
PGR119G0082 Punica granatum HOM05D006556 ORTHO05D008146 3.8e-08 63.9 134 33.6
Ciclev10028524m.g Citrus clementina HOM05D007402 ORTHO05D003673 1.1e-07 62.4 142 26.1
AL53U10010 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 4.2e-07 60.5 158 28.5
Manes.07G071796 Manihot esculenta HOM05D006980 ORTHO05D008704 1.2e-06 58.9 45 55.6
Manes.11G141800 Manihot esculenta HOM05D007402 ORTHO05D003673 1.2e-06 58.9 144 25.7
ATR0068G034 Amborella trichopoda HOM05D007402 ORTHO05D003673 1.6e-06 58.5 168 25.0
Oeu029122.1 Olea europaea HOM05D006980 ORTHO05D008704 1.6e-06 58.5 50 48.0
MBI06_g23075_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 2.1e-06 58.2 231 28.1
Eucgr.I02218 Eucalyptus grandis HOM05D006556 ORTHO05D008146 3.5e-06 57.4 132 31.1
MBI06_g43058_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 4.6e-06 57.0 219 27.9
Glyma.17G099400 Glycine max HOM05D002453 ORTHO05D002107 6.0e-06 56.6 132 30.3


User provided reference genes

Program Settings