Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 5.3e-268 927.2 486 100.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 5.1e-162 575.1 548 60.4
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 5.7e-161 571.6 539 60.1
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 4.5e-158 562.0 554 59.2
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-155 553.1 536 59.0
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-155 553.1 537 58.8
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.6e-155 552.4 537 58.8
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-153 546.6 547 58.0
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 2.8e-144 516.2 537 55.7
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 3.2e-140 502.7 543 54.7
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.6e-139 500.4 544 53.7
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.0e-138 497.7 544 54.0
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 2.0e-137 493.4 541 52.7
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 6.3e-136 488.4 544 52.0
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.1e-135 487.6 547 52.8
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.4e-135 487.3 541 54.2
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 2.4e-135 486.5 546 52.7
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 5.3e-135 485.3 541 54.2
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.0e-134 483.4 552 52.9
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 2.0e-134 483.4 552 52.9
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 2.2e-133 479.9 542 52.4
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 5.0e-133 478.8 541 51.8
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 6.5e-133 478.4 547 51.6
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.9e-132 476.9 540 52.8
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 4.2e-132 475.7 540 51.1
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 4.2e-132 475.7 540 52.2
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 4.2e-132 475.7 552 51.8
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 9.4e-132 474.6 535 51.4
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.2e-131 474.2 534 53.0
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 1.6e-131 473.8 537 52.1
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.6e-131 473.8 501 53.9
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.7e-131 473.0 493 54.2
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.7e-131 473.0 547 51.2
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 2.7e-131 473.0 541 53.0
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.6e-131 472.6 535 51.2
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 4.7e-131 472.2 543 52.3
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.3e-130 469.9 556 51.3
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 5.2e-130 468.8 533 50.7
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 8.8e-130 468.0 565 51.0
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 8.8e-130 468.0 538 50.4
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.2e-129 467.6 535 52.7
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.2e-129 467.6 535 52.7
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.2e-129 467.6 535 52.1
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.6e-129 466.5 556 50.2
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.6e-129 466.5 607 47.9
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 9.7e-129 464.5 565 50.6
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 9.7e-129 464.5 543 50.1
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 3.7e-128 462.6 519 52.2
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 6.3e-128 461.8 490 54.3
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 8.2e-128 461.5 542 50.6
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.4e-127 460.7 549 50.6
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 2.4e-127 459.9 546 49.8
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.2e-126 457.6 532 51.5
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 2.0e-126 456.8 533 50.3
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 3.5e-126 456.1 543 49.4
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.3e-125 454.1 473 53.3
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.3e-125 454.1 547 49.4
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.7e-125 453.8 544 49.4
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 8.5e-125 451.4 546 48.4
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.1e-124 451.1 540 50.4
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.5e-124 450.7 544 48.2
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.9e-124 450.3 461 54.7
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 9.4e-124 448.0 543 47.9
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.2e-123 447.6 476 51.9
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.6e-123 447.2 510 51.0
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 3.6e-123 446.0 543 49.2
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 4.7e-123 445.7 546 49.8
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 4.7e-123 445.7 543 48.4
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 6.1e-123 445.3 542 48.7
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 6.1e-123 445.3 543 48.3
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 6.1e-123 445.3 543 48.8
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 6.1e-123 445.3 543 48.3
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 6.1e-123 445.3 453 55.6
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 4.0e-122 442.6 453 54.3
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.5e-121 440.7 537 48.8
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 1.5e-121 440.7 533 49.9
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 2.0e-121 440.3 451 53.7
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 2.0e-121 440.3 412 60.7
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 2.6e-121 439.9 544 48.9
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 3.4e-121 439.5 543 48.3
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 4.4e-121 439.1 490 51.2
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 9.8e-121 438.0 457 54.0
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.7e-120 437.2 557 46.3
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 2.8e-120 436.4 545 47.9
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 4.1e-119 432.6 507 50.9
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.6e-118 430.6 457 53.2
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 4.5e-118 429.1 471 51.6
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.0e-117 427.9 496 50.8
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 5.0e-117 425.6 531 47.8
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 8.6e-117 424.9 469 52.5
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.5e-116 424.1 555 45.8
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 2.5e-116 423.3 450 53.3
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 9.5e-116 421.4 469 50.3
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 3.6e-115 419.5 542 47.6
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 1.0e-114 417.9 529 46.7
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 3.0e-114 416.4 411 57.4
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 5.7e-113 412.1 582 44.0
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 9.8e-113 411.4 555 46.5
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 4.7e-107 392.5 471 48.4
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 3.0e-106 389.8 449 50.8
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 1.7e-101 374.0 535 43.0
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.7e-101 374.0 491 47.0
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 4.3e-100 369.4 431 49.9
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 7.3e-100 368.6 461 48.4
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.8e-98 364.0 423 50.1
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 8.9e-98 361.7 360 56.1
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 4.9e-96 355.9 430 47.4
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.2e-94 351.3 423 49.2
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 7.8e-94 348.6 432 49.1
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.6e-91 340.9 487 43.5
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 8.1e-91 338.6 345 54.5
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 8.9e-90 335.1 459 44.2
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.3e-88 331.3 378 53.4
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 6.4e-88 328.9 452 42.9
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.1e-84 318.2 459 45.3
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.6e-83 314.3 464 40.5
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.8e-74 284.3 385 45.7
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 5.8e-65 252.7 310 46.5
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 1.6e-62 244.6 432 34.7
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 9.6e-60 235.3 166 78.9
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 2.0e-57 227.6 449 35.6
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.7e-56 224.6 212 54.7
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 5.5e-55 219.5 506 33.2
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 2.1e-54 217.6 271 49.1
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 2.3e-53 214.2 165 74.5
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 9.6e-52 208.8 263 49.0
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.0e-50 203.4 157 74.5
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.2e-49 201.8 197 58.4
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 5.5e-47 193.0 128 82.0
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.1e-45 186.4 262 45.4
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 5.7e-44 183.0 260 44.6
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 3.1e-42 177.2 266 44.7
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 6.9e-42 176.0 158 67.7
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.6e-41 172.6 158 67.1
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 9.4e-39 165.6 156 55.8
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 2.1e-38 164.5 259 44.0
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-36 158.7 250 44.4
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 4.3e-36 156.8 217 47.0
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 6.3e-35 152.9 115 67.8
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.4e-34 151.8 187 49.7
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.4e-34 151.0 256 41.0
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 5.3e-26 123.2 112 67.9
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 7.0e-26 122.9 122 64.8
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 9.1e-26 122.5 112 57.1
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 3.4e-25 120.6 133 54.1
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 1.7e-24 118.2 95 67.4
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-23 115.5 79 70.9
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 8.0e-22 109.4 163 41.1
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 2.2e-19 101.3 125 50.4
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 4.1e-18 97.1 245 31.0
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.6e-17 94.4 241 32.4
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 2.6e-17 94.4 241 32.4
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.5e-17 94.0 94 56.4
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.2e-16 91.3 104 45.2
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 3.0e-13 80.9 123 35.8
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 6.7e-13 79.7 107 44.9
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.5e-12 78.6 63 63.5
RcHm_v2.0_Chr3g0487851 Rosa chinensis HOM05D004140 ORTHO05D343225 2.6e-12 77.8 42 95.2
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 5.7e-12 76.6 94 45.7
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 7.5e-12 76.3 92 46.7
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 2.5e-07 61.2 43 76.7
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 5.5e-07 60.1 45 66.7
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 5.5e-07 60.1 45 66.7
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 5.5e-07 60.1 45 66.7


User provided reference genes

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