Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.4e-56 222.6 105 100.0
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 6.9e-40 167.2 100 79.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 5.0e-38 161.0 103 74.8
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 2.5e-37 158.7 100 75.0
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 3.6e-36 154.8 100 71.0
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 3.6e-36 154.8 100 71.0
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 6.1e-36 154.1 100 72.0
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 6.1e-36 154.1 100 72.0
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 6.1e-36 154.1 100 72.0
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.8e-35 152.5 101 72.3
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.3e-35 152.1 100 71.0
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 2.3e-35 152.1 100 74.0
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.3e-35 152.1 100 74.0
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.3e-35 152.1 100 74.0
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.3e-35 152.1 100 74.0
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 3.0e-35 151.8 100 72.0
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 3.9e-35 151.4 100 70.0
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 6.7e-35 150.6 100 71.0
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.7e-35 150.6 100 73.0
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 8.8e-35 150.2 106 70.8
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-34 149.8 115 67.8
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.1e-34 149.8 101 71.3
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.5e-34 149.4 100 70.0
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 2.0e-34 149.1 100 72.0
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 2.6e-34 148.7 100 70.0
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 4.4e-34 147.9 100 70.0
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 5.7e-34 147.5 100 72.0
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 5.7e-34 147.5 100 69.0
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 5.7e-34 147.5 100 69.0
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 7.4e-34 147.1 100 71.0
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 7.4e-34 147.1 100 70.0
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 7.4e-34 147.1 100 70.0
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 7.4e-34 147.1 100 69.0
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.3e-33 146.4 100 67.0
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 1.7e-33 146.0 100 71.0
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.7e-33 146.0 100 68.0
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.8e-33 145.2 100 70.0
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 2.8e-33 145.2 100 66.0
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 2.8e-33 145.2 100 66.0
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 2.8e-33 145.2 100 66.0
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 3.7e-33 144.8 100 66.0
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 3.7e-33 144.8 100 66.0
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 3.7e-33 144.8 100 66.0
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 3.7e-33 144.8 100 66.0
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 3.7e-33 144.8 100 70.0
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 4.8e-33 144.4 100 65.0
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 6.3e-33 144.1 102 65.7
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 6.3e-33 144.1 102 65.7
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 6.3e-33 144.1 102 68.6
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 8.2e-33 143.7 100 65.0
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 8.2e-33 143.7 100 70.0
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.4e-32 142.9 102 64.7
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.4e-32 142.9 100 67.0
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.4e-32 142.9 100 69.0
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.4e-32 142.9 100 67.0
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.4e-32 142.9 100 67.0
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.8e-32 142.5 100 67.0
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.8e-32 142.5 100 68.0
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.8e-32 142.5 100 68.0
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.4e-32 142.1 100 63.0
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 2.4e-32 142.1 100 63.0
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 2.4e-32 142.1 100 69.0
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 3.1e-32 141.7 100 67.0
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 3.1e-32 141.7 101 69.3
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 4.1e-32 141.4 100 66.0
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.3e-32 141.0 100 67.0
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 7.0e-32 140.6 104 68.3
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 7.0e-32 140.6 100 68.0
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 7.0e-32 140.6 100 67.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 7.0e-32 140.6 100 68.0
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 7.0e-32 140.6 101 65.3
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 9.1e-32 140.2 100 64.0
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.2e-31 139.8 103 62.1
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.6e-31 139.4 100 65.0
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.6e-31 139.4 100 65.0
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.6e-31 139.4 100 67.0
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.0e-31 139.0 100 66.0
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 2.0e-31 139.0 100 66.0
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.6e-31 138.7 100 66.0
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 4.5e-31 137.9 100 64.0
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 4.5e-31 137.9 100 68.0
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 5.9e-31 137.5 100 65.0
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 7.7e-31 137.1 100 65.0
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 7.7e-31 137.1 101 65.3
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.0e-30 136.7 100 64.0
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.0e-30 136.7 100 65.0
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.0e-30 136.7 100 65.0
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.0e-30 136.7 100 65.0
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 1.3e-30 136.3 100 64.0
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.2e-30 135.6 100 62.0
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 2.2e-30 135.6 100 65.0
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 2.9e-30 135.2 100 62.0
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.9e-30 135.2 100 64.0
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 5.0e-30 134.4 103 64.1
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 8.5e-30 133.7 104 61.5
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.1e-29 133.3 100 64.0
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.5e-29 132.9 100 64.0
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 7.2e-29 130.6 100 64.0
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 1.6e-28 129.4 101 64.4
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.1e-28 129.0 101 62.4
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 4.7e-28 127.9 100 62.0
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 8.0e-28 127.1 101 59.4
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.0e-27 126.7 83 72.3
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.0e-27 126.7 101 61.4
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 4.4e-26 121.3 88 63.6
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 9.7e-26 120.2 80 68.8
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 2.2e-25 119.0 99 57.6
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.8e-25 118.6 100 58.0
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 6.3e-25 117.5 84 64.3
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.4e-24 116.3 101 53.5
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.4e-24 116.3 86 61.6
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 5.3e-24 114.4 79 69.6
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.3e-22 109.8 110 48.2
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 5.0e-22 107.8 144 45.1
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.5e-21 105.5 121 51.2
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 4.2e-21 104.8 89 60.7
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 4.2e-21 104.8 89 60.7
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 5.5e-21 104.4 85 61.2
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 6.1e-20 100.9 90 56.7
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.8e-19 99.4 99 46.5
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.3e-19 99.0 82 62.2
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 3.0e-19 98.6 116 42.2
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.8e-19 97.1 80 61.2
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 8.8e-19 97.1 79 57.0
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.6e-18 95.5 78 61.5
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 4.4e-18 94.7 78 61.5
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 7.5e-18 94.0 101 41.6
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.3e-17 93.2 208 32.2
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.5e-13 79.7 52 71.2
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 9.5e-13 77.0 49 65.3
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.0e-11 72.0 92 41.3
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 4.4e-10 68.2 69 47.8
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 7.5e-10 67.4 51 56.9
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 9.8e-10 67.0 65 49.2
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 8.3e-09 63.9 65 47.7
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 3.8e-06 55.1 116 33.6
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 6.6e-06 54.3 49 53.1


User provided reference genes

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