Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 6.0e-294 1013.4 519 100.0
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-268 928.7 516 91.9
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-268 928.7 516 92.1
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.3e-268 927.9 519 91.5
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.2e-267 925.2 530 90.2
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.2e-249 866.3 528 84.5
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.4e-245 852.8 534 83.0
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.5e-228 796.2 520 77.9
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.5e-223 779.6 522 75.9
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 4.2e-223 778.1 522 75.7
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.3e-216 756.5 525 74.1
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.1e-215 753.4 526 74.5
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 6.2e-214 747.7 526 73.4
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 5.2e-213 744.6 530 71.9
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 6.8e-213 744.2 533 72.8
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.2e-212 743.4 533 73.0
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.5e-212 743.0 524 74.0
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 8.3e-211 737.3 523 74.2
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.9e-210 736.1 530 73.4
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 2.4e-210 735.7 520 72.5
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.2e-209 733.4 587 66.1
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.6e-209 733.0 526 72.1
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 3.5e-209 731.9 404 91.6
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 7.8e-209 730.7 530 71.5
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 1.0e-208 730.3 529 71.6
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.9e-207 726.1 522 72.2
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 3.3e-207 725.3 547 68.7
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 4.3e-207 724.9 522 72.0
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 7.3e-207 724.2 520 71.3
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 7.3e-207 724.2 520 71.3
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 9.5e-207 723.8 522 69.7
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.1e-206 722.6 537 70.0
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 2.8e-206 722.2 546 68.3
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 6.8e-205 717.6 521 71.2
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 1.2e-204 716.8 528 71.2
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.5e-204 716.5 523 70.4
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 2.6e-204 715.7 523 70.7
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.3e-203 713.4 525 71.6
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 2.2e-203 712.6 529 69.4
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.9e-203 712.2 537 69.5
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.7e-203 711.8 522 70.9
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 6.0e-201 704.5 525 69.0
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 7.8e-201 704.1 523 69.6
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 6.6e-200 701.0 525 69.1
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 8.6e-200 700.7 392 88.8
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.5e-199 699.9 524 68.7
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 9.5e-199 697.2 534 67.6
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 9.5e-199 697.2 523 69.0
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 2.3e-197 692.6 526 69.2
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 3.1e-197 692.2 532 67.9
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 3.1e-197 692.2 434 79.3
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 5.2e-197 691.4 528 67.6
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 3.4e-196 688.7 524 69.5
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 6.4e-195 684.5 531 68.0
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 8.4e-195 684.1 521 67.8
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 3.2e-194 682.2 524 68.1
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 2.5e-191 672.5 528 65.2
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.6e-191 671.4 454 71.8
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 2.4e-189 666.0 529 66.4
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 8.9e-189 664.1 523 66.3
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.2e-188 663.7 523 68.3
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 2.0e-188 662.9 546 63.9
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 7.6e-188 661.0 527 65.7
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 3.8e-187 658.7 525 65.7
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 4.9e-187 658.3 532 64.3
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 4.9e-187 658.3 528 65.2
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.4e-186 656.0 474 67.9
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.6e-185 653.3 434 74.0
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 3.5e-185 652.1 433 73.4
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 7.8e-185 651.0 536 62.7
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.3e-184 650.2 520 65.2
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.7e-184 649.8 525 65.5
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 5.1e-184 648.3 521 64.7
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 4.8e-182 641.7 521 64.3
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 6.2e-182 641.3 523 62.5
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 6.2e-182 641.3 523 62.5
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.1e-181 640.6 531 64.2
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 3.1e-181 639.0 528 63.3
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 4.0e-181 638.6 523 62.3
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.2e-180 637.1 404 78.0
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 2.6e-180 636.0 527 63.2
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.9e-178 629.8 525 62.5
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 9.3e-178 627.5 532 62.0
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.2e-177 627.1 541 60.8
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 1.2e-177 627.1 529 62.0
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 1.6e-177 626.7 548 60.8
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 2.1e-177 626.3 540 60.6
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 3.1e-173 612.5 472 64.8
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 3.4e-172 609.0 428 71.7
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 4.9e-171 605.1 806 46.4
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.5e-167 593.6 403 72.2
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 9.6e-167 590.9 411 70.1
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.8e-165 586.6 548 57.5
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 4.0e-165 585.5 509 61.1
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.9e-162 576.6 476 63.4
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 5.5e-162 575.1 539 60.1
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 1.5e-159 567.0 475 60.4
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 9.6e-159 564.3 540 55.9
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 6.9e-157 558.1 523 57.6
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 3.4e-156 555.8 534 57.1
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 5.5e-154 548.5 449 62.1
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 6.7e-152 541.6 407 67.1
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.1e-151 540.8 420 68.6
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 6.3e-150 535.0 408 68.4
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 4.1e-149 532.3 536 56.7
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.2e-148 530.8 589 50.9
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 3.0e-144 516.2 551 51.0
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 2.6e-135 486.5 453 57.2
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 7.0e-133 478.4 450 54.4
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 4.4e-127 459.1 445 52.6
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 6.3e-118 428.7 411 56.7
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.7e-115 420.6 452 52.4
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.2e-115 420.2 454 50.2
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 5.5e-114 415.6 469 47.1
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 8.0e-113 411.8 548 45.3
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 3.6e-97 359.8 277 67.9
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 6.2e-97 359.0 398 51.8
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 2.8e-89 333.6 380 51.3
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.0e-87 327.4 444 41.2
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 8.3e-86 322.0 441 42.0
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 7.8e-84 315.5 216 70.8
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 7.3e-82 308.9 300 53.3
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 4.4e-79 299.7 551 35.8
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.2e-71 275.0 233 66.1
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 3.3e-58 230.3 187 64.7
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.8e-57 227.3 270 50.4
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 2.8e-57 227.3 166 69.3
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 2.6e-55 220.7 159 67.9
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 3.5e-52 210.3 263 49.0
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.0e-51 207.2 245 50.6
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.6e-47 194.1 159 63.5
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 2.9e-46 190.7 173 62.4
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.9e-44 182.6 165 63.0
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-42 177.9 371 35.3
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 2.1e-41 174.5 250 45.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 4.8e-41 173.3 447 33.1
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 6.3e-41 172.9 125 73.6
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-40 172.2 168 59.5
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.8e-40 171.4 258 44.2
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 2.0e-39 167.9 168 59.5
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 7.6e-39 166.0 243 43.6
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.3e-38 165.2 115 70.4
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 5.5e-37 159.8 100 75.0
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 1.6e-36 158.3 97 83.5
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 6.5e-30 136.3 79 88.6
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.9e-29 134.8 134 59.0
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 9.4e-29 132.5 96 67.7
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 2.1e-28 131.3 115 60.0
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.7e-25 120.6 135 48.9
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 6.3e-25 119.8 114 59.6
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.4e-24 117.9 222 38.7
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 4.1e-24 117.1 223 39.5
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 5.3e-24 116.7 129 55.0
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 3.8e-22 110.5 224 35.7
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 7.9e-20 102.8 132 49.2
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 6.3e-17 93.2 94 50.0
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.6e-15 87.8 63 66.7
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.0e-14 85.9 63 66.7
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 2.9e-14 84.3 136 32.4
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.6e-10 71.2 84 42.9
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 6.3e-09 66.6 38 76.3
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 6.3e-09 66.6 38 76.3
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 6.3e-09 66.6 38 76.3
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 6.3e-09 66.6 38 76.3
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.2e-07 62.4 212 27.4
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 4.5e-07 60.5 38 76.3
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 4.5e-07 60.5 38 76.3
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 4.5e-07 60.5 38 76.3
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 5.9e-07 60.1 43 72.1
FAN14G4481 Fragaria x ananassa HOM05D004140 ORTHO05D203265 2.2e-06 58.2 159 34.0
RcHm_v2.0_Chr3g0487851 Rosa chinensis HOM05D004140 ORTHO05D343225 5.0e-06 57.0 42 71.4


User provided reference genes

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