Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 2.8e-82 308.5 154 100.0
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 7.0e-81 303.9 154 98.1
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 3.5e-80 301.6 154 97.4
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.0e-79 300.1 154 96.8
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 1.4e-73 279.6 154 89.0
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 9.4e-70 266.9 148 87.8
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 3.1e-65 251.9 153 79.1
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 1.2e-64 250.0 151 78.8
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 1.6e-64 249.6 152 78.3
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 4.5e-64 248.1 150 80.0
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 3.8e-63 245.0 147 78.9
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 3.8e-63 245.0 153 77.1
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 6.6e-63 244.2 151 78.8
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.5e-62 243.0 149 76.5
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 4.2e-62 241.5 152 76.3
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 5.5e-62 241.1 153 76.5
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 5.5e-62 241.1 153 75.8
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 7.2e-62 240.7 153 77.1
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 7.2e-62 240.7 149 78.5
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 1.2e-61 240.0 150 76.7
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 2.1e-61 239.2 153 75.2
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 2.1e-61 239.2 147 80.3
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 2.8e-61 238.8 154 74.7
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 2.8e-61 238.8 152 77.0
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 3.6e-61 238.4 154 72.1
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 3.6e-61 238.4 152 75.0
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 4.7e-61 238.0 151 72.8
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 4.7e-61 238.0 152 74.3
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 1.0e-60 236.9 154 70.8
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 1.0e-60 236.9 151 73.5
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.4e-60 236.5 153 73.2
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.4e-60 236.5 123 95.9
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 1.4e-60 236.5 154 72.1
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 1.8e-60 236.1 150 76.0
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 1.8e-60 236.1 151 74.8
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 2.3e-60 235.7 150 74.0
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 3.0e-60 235.3 150 72.7
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 3.0e-60 235.3 154 72.1
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 5.2e-60 234.6 151 74.2
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 2.0e-59 232.6 149 71.1
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 2.6e-59 232.3 145 77.9
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 3.4e-59 231.9 150 72.7
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 3.4e-59 231.9 153 70.6
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 3.4e-59 231.9 151 72.2
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 3.4e-59 231.9 151 72.2
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 4.4e-59 231.5 152 70.4
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 5.7e-59 231.1 148 75.7
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 5.7e-59 231.1 153 71.2
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 7.5e-59 230.7 152 74.3
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 1.3e-58 229.9 153 70.6
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.3e-58 229.9 149 75.2
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.3e-58 229.9 149 75.2
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 2.2e-58 229.2 152 72.4
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 2.9e-58 228.8 150 70.7
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 3.7e-58 228.4 152 69.7
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 6.3e-58 227.6 144 75.0
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 6.3e-58 227.6 152 72.4
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 6.3e-58 227.6 153 72.5
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 6.3e-58 227.6 153 72.5
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 1.1e-57 226.9 149 71.1
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 1.4e-57 226.5 152 70.4
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.4e-57 226.5 151 72.2
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 2.4e-57 225.7 154 70.1
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 3.2e-57 225.3 146 72.6
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 7.0e-57 224.2 153 69.9
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 7.0e-57 224.2 152 68.4
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 9.2e-57 223.8 148 69.6
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 1.6e-56 223.0 151 71.5
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.6e-56 223.0 153 69.9
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 2.0e-56 222.6 154 66.9
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 2.7e-56 222.2 152 69.7
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 4.6e-56 221.5 149 69.1
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 1.0e-55 220.3 149 70.5
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 1.3e-55 219.9 153 68.0
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.7e-55 219.5 153 68.6
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 3.9e-55 218.4 149 68.5
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 5.0e-55 218.0 152 67.1
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 5.0e-55 218.0 149 69.1
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 6.6e-55 217.6 152 67.1
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 1.9e-54 216.1 149 67.8
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 5.6e-54 214.5 150 65.3
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 1.2e-53 213.4 143 71.3
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 2.3e-52 209.1 147 65.3
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 4.0e-52 208.4 151 67.5
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 5.2e-52 208.0 153 64.1
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 6.8e-52 207.6 152 65.1
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 6.8e-52 207.6 150 66.7
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 8.9e-52 207.2 138 69.6
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 2.0e-51 206.1 152 63.2
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 5.8e-51 204.5 142 64.8
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 1.3e-50 203.4 148 65.5
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 2.2e-50 202.6 148 62.8
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 6.4e-50 201.1 148 64.2
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 1.1e-49 200.3 146 65.1
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 7.0e-49 197.6 146 64.4
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 1.2e-48 196.8 150 61.3
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 2.0e-48 196.1 151 60.3
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 3.5e-48 195.3 148 61.5
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 6.0e-48 194.5 146 63.7
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 1.3e-47 193.4 150 60.0
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 1.3e-47 193.4 150 60.7
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 1.7e-47 193.0 148 60.1
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 2.3e-47 192.6 150 60.0
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 2.3e-47 192.6 150 60.0
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 2.3e-47 192.6 148 60.1
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 3.0e-47 192.2 148 60.1
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 3.9e-47 191.8 150 59.3
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 5.0e-47 191.4 150 62.7
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.1e-46 190.3 145 62.1
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 1.1e-46 190.3 146 60.3
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 9.5e-46 187.2 151 58.3
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 3.6e-45 185.3 122 73.8
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 4.4e-43 178.3 148 59.5
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 4.4e-43 178.3 142 57.7
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 6.4e-42 174.5 148 56.1
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 1.6e-40 169.9 131 58.0
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 1.7e-39 166.4 121 67.8
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 5.6e-38 161.4 98 77.6
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 2.0e-35 152.9 144 52.8
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 3.4e-35 152.1 144 48.6
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 9.9e-35 150.6 137 58.4
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 2.2e-34 149.4 143 55.2
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 4.9e-34 148.3 151 45.0
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 1.9e-33 146.4 105 68.6
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 3.2e-33 145.6 145 46.9
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 5.6e-30 134.8 74 86.5
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 8.1e-29 131.0 97 62.9
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 3.1e-28 129.0 141 48.2
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 4.0e-28 128.6 145 49.7
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 2.2e-26 122.9 113 54.0
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 6.4e-26 121.3 142 45.1
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 9.3e-25 117.5 156 44.2
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 2.4e-20 102.8 84 51.2
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 1.5e-19 100.1 85 56.5


User provided reference genes

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