Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0473301 Rosa chinensis HOM05D000371 ORTHO05D023241 2.0e-55 218.8 107 100.0
RcHm_v2.0_Chr3g0473221 Rosa chinensis HOM05D000371 ORTHO05D023241 3.0e-38 161.8 81 96.3
RcHm_v2.0_Chr3g0464491 Rosa chinensis HOM05D000371 ORTHO05D006177 8.1e-20 100.5 66 80.3
FvH4_6g12640 Fragaria vesca HOM05D000371 ORTHO05D006177 2.0e-18 95.9 92 64.1
FAN05G2038 Fragaria x ananassa HOM05D000371 ORTHO05D006177 2.0e-18 95.9 92 63.0
FAN09G2403 Fragaria x ananassa HOM05D000371 ORTHO05D006177 2.0e-18 95.9 92 64.1
FAN14G4066 Fragaria x ananassa HOM05D000371 ORTHO05D006177 2.0e-18 95.9 92 64.1
Ciclev10011305m.g Citrus clementina HOM05D000371 ORTHO05D006177 7.6e-18 94.0 66 74.2
Atru.chr8.2107 Acer truncatum HOM05D000371 ORTHO05D006177 9.9e-18 93.6 65 75.4
GSVIVG01034052001 Vitis vinifera HOM05D000371 ORTHO05D006177 1.7e-17 92.8 65 73.8
CSS0030871 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006177 6.4e-17 90.9 63 65.1
CSS0040865 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006177 6.4e-17 90.9 63 65.1
DCAR_028802 Daucus carota HOM05D000371 ORTHO05D006177 1.1e-16 90.1 65 70.8
MD04G1140300 Malus domestica HOM05D000371 ORTHO05D006177 1.9e-16 89.4 64 71.9
TWI74G1022 Tripterygium wilfordii HOM05D000371 ORTHO05D006177 1.9e-16 89.4 65 72.3
VMungo0720G2985 Vigna mungo HOM05D000371 ORTHO05D006177 2.4e-16 89.0 92 55.4
PGR031G1276 Punica granatum HOM05D000371 ORTHO05D006177 3.2e-16 88.6 66 65.2
Cc00_g16740 Coffea canephora HOM05D000371 ORTHO05D006177 4.2e-16 88.2 64 65.6
Haze_20900 Corylus avellana HOM05D000371 ORTHO05D006177 4.2e-16 88.2 64 70.3
Cfa017293 Carpinus fangiana HOM05D000371 ORTHO05D006177 5.5e-16 87.8 64 70.3
Hma1.2p1_0671F.1_g200670 Hydrangea macrophylla HOM05D000371 ORTHO05D006177 5.5e-16 87.8 64 65.6
ClCG04G007520 Citrullus lanatus HOM05D000371 ORTHO05D006177 7.1e-16 87.4 65 66.2
Lj3C959T17 Lonicera japonica HOM05D000371 ORTHO05D006177 7.1e-16 87.4 65 64.6
Sabra16G0104300 Salix brachista HOM05D000371 ORTHO05D006177 7.1e-16 87.4 65 69.2
arahy.Tifrunner.gnm1.ann1.23E1K9 Arachis hypogaea HOM05D000371 ORTHO05D006177 1.2e-15 86.7 65 69.2
MD12G1155600 Malus domestica HOM05D000371 ORTHO05D006177 1.2e-15 86.7 62 69.4
Manes.15G172300 Manihot esculenta HOM05D000371 ORTHO05D006177 1.2e-15 86.7 66 65.2
Phvul.007G249700 Phaseolus vulgaris HOM05D000371 ORTHO05D006177 1.2e-15 86.7 92 53.3
Potri.016G105100 Populus trichocarpa HOM05D000371 ORTHO05D006177 1.2e-15 86.7 65 69.2
Cpa.g.sc56.67 Carica papaya HOM05D000371 ORTHO05D006177 1.6e-15 86.3 64 68.8
HanXRQChr06g0176681 Helianthus annuus HOM05D000371 ORTHO05D006177 1.6e-15 86.3 63 68.3
LjContig00047_ERROPOS266959g0016401 Lotus japonicus HOM05D000371 ORTHO05D006177 1.6e-15 86.3 65 66.2
Lalb_Chr07g0193201 Lupinus albus HOM05D000371 ORTHO05D006177 1.6e-15 86.3 63 63.5
Nitab4.5_0001650g0040 Nicotiana tabacum HOM05D000371 ORTHO05D006177 1.6e-15 86.3 64 68.8
QL06p037270 Quercus lobata HOM05D000371 ORTHO05D006177 1.6e-15 86.3 65 66.2
Sopen11g006220 Solanum pennellii HOM05D000371 ORTHO05D006177 1.6e-15 86.3 64 67.2
arahy.Tifrunner.gnm1.ann1.YWW12F Arachis hypogaea HOM05D000371 ORTHO05D006177 2.1e-15 85.9 64 64.1
BcaC08g44659 Brassica carinata HOM05D000371 ORTHO05D006177 2.1e-15 85.9 46 80.4
C06p21810 Brassica napus HOM05D000371 ORTHO05D006177 2.1e-15 85.9 46 80.4
Eucgr.C00633 Eucalyptus grandis HOM05D000371 ORTHO05D006177 2.1e-15 85.9 61 68.9
Prupe.6G265400 Prunus persica HOM05D000371 ORTHO05D006177 2.1e-15 85.9 65 66.2
Solyc11g011420.3 Solanum lycopersicum HOM05D000371 ORTHO05D006177 2.1e-15 85.9 64 67.2
COL.COLO4_14682 Corchorus olitorius HOM05D000371 ORTHO05D006177 2.7e-15 85.5 64 67.2
Duzib093G0786 Durio zibethinus HOM05D000371 ORTHO05D006177 2.7e-15 85.5 65 67.7
Nitab4.5_0006562g0050 Nicotiana tabacum HOM05D000371 ORTHO05D006177 2.7e-15 85.5 64 68.8
Aa31LG10G8800 Aethionema arabicum HOM05D000371 ORTHO05D006177 3.5e-15 85.1 65 66.2
BraA04t16273Z Brassica rapa HOM05D000371 ORTHO05D006177 3.5e-15 85.1 65 64.6
CAN.G222.59 Capsicum annuum HOM05D000371 ORTHO05D006177 3.5e-15 85.1 64 68.8
CsaV3_4G025730 Cucumis sativus L. HOM05D000371 ORTHO05D006177 3.5e-15 85.1 65 63.1
Psat7g241000 Pisum sativum HOM05D000371 ORTHO05D006177 3.5e-15 85.1 64 67.2
CiPaw.10G150300 Carya illinoinensis HOM05D000371 ORTHO05D006177 4.6e-15 84.7 65 64.6
Gohir.A09G161700 Gossypium hirsutum HOM05D000371 ORTHO05D006177 6.0e-15 84.3 64 65.6
Gohir.D09G157300 Gossypium hirsutum HOM05D000371 ORTHO05D006177 6.0e-15 84.3 64 65.6
Gorai.006G178900 Gossypium raimondii HOM05D000371 ORTHO05D006177 6.0e-15 84.3 64 65.6
PSO384G0158 Papaver somniferum HOM05D000371 ORTHO05D006177 6.0e-15 84.3 64 64.1
Thecc.05G027800 Theobroma cacao HOM05D000371 ORTHO05D006177 6.0e-15 84.3 65 64.6
CARHR163910 Cardamine hirsuta HOM05D000371 ORTHO05D006177 7.9e-15 84.0 63 66.7
MELO3C003198.2 Cucumis melo HOM05D000371 ORTHO05D006177 7.9e-15 84.0 65 61.5
Glyma.01G106600 Glycine max HOM05D000371 ORTHO05D006177 7.9e-15 84.0 64 64.1
Glyma.03G073714 Glycine max HOM05D000371 ORTHO05D006177 7.9e-15 84.0 64 64.1
AL5G35010 Arabidopsis lyrata HOM05D000371 ORTHO05D006177 1.0e-14 83.6 45 82.2
AT3G54010 Arabidopsis thaliana HOM05D000371 ORTHO05D006177 1.0e-14 83.6 45 82.2
MSTRG.5620 Avicennia marina HOM05D000371 ORTHO05D006177 1.0e-14 83.6 64 64.1
BcaB02g08493 Brassica carinata HOM05D000371 ORTHO05D006177 1.0e-14 83.6 46 80.4
Thhalv10010196m.g Eutrema salsugineum HOM05D000371 ORTHO05D006177 1.3e-14 83.2 46 78.3
Lsat_1_v5_gn_8_80801 Lactuca sativa HOM05D000371 ORTHO05D006177 1.8e-14 82.8 64 65.6
A04p05770 Brassica napus HOM05D002554 ORTHO05D006177 2.3e-14 82.4 47 76.6
HanXRQChr08g0229871 Helianthus annuus HOM05D000371 ORTHO05D023241 2.3e-14 82.4 47 76.6
Oeu030546.3 Olea europaea HOM05D000371 ORTHO05D006177 3.0e-14 82.0 64 57.8
THA.LOC104806536 Tarenaya hassleriana HOM05D000371 ORTHO05D006177 3.0e-14 82.0 64 64.1
vmacro20202 Vaccinium macrocarpon HOM05D000371 ORTHO05D006177 3.0e-14 82.0 63 63.5
BolC6t37369H Brassica oleracea HOM05D000371 ORTHO05D006177 3.9e-14 81.6 45 77.8
Nitab4.5_0001088g0110 Nicotiana tabacum HOM05D000371 ORTHO05D023241 3.9e-14 81.6 47 78.7
SalBow8G2887 Salvia bowleyana HOM05D000371 ORTHO05D006177 3.9e-14 81.6 64 60.9
TAR369G0679 Trochodendron aralioides HOM05D000371 ORTHO05D006177 3.9e-14 81.6 64 62.5
Ca_03543_v3 Cicer arietinum L. HOM05D000371 ORTHO05D006177 5.1e-14 81.3 64 65.6
ECA236G3449 Erigeron canadensis HOM05D000371 ORTHO05D006177 5.1e-14 81.3 64 62.5
Sp5g08380 Schrenkiella parvula HOM05D000371 ORTHO05D006177 5.1e-14 81.3 44 79.5
SGA_v2.0_scaffold85G26809 Striga asiatica HOM05D000371 ORTHO05D006177 5.1e-14 81.3 64 60.9
Duzib106G1179 Durio zibethinus HOM05D000371 ORTHO05D006177 6.7e-14 80.9 64 65.6
Sed0006661 Sechium edule HOM05D000371 ORTHO05D006177 6.7e-14 80.9 69 59.4
TPR.G17889 Trifolium pratense HOM05D000371 ORTHO05D006177 6.7e-14 80.9 43 81.4
PSO339G3206 Papaver somniferum HOM05D000371 ORTHO05D006177 8.7e-14 80.5 64 62.5
Hund02037 Selenicereus undatus HOM05D000371 ORTHO05D006177 8.7e-14 80.5 65 60.0
Medtr4g055500 Medicago truncatula HOM05D000371 ORTHO05D006177 1.5e-13 79.7 63 65.1
Aqoxy1G00785 Aquilegia oxysepala HOM05D000371 ORTHO05D006177 1.9e-13 79.3 65 64.6
CANSAT01G2772 Cannabis sativa HOM05D000371 ORTHO05D006177 2.5e-13 79.0 65 61.5
Nn2g15155 Nelumbo nucifera HOM05D000371 ORTHO05D006177 3.3e-13 78.6 64 64.1
EL10Ac4g07709 Beta vulgaris HOM05D000371 ORTHO05D006177 5.6e-13 77.8 64 57.8
Rhsim05G0200700 Rhododendron simsii HOM05D000371 ORTHO05D006177 7.4e-13 77.4 41 82.9
C04p38550 Brassica napus HOM05D002554 ORTHO05D006177 1.6e-12 76.3 47 72.3
BolC4t25430H Brassica oleracea HOM05D002554 ORTHO05D006177 1.6e-12 76.3 47 72.3
Actinidia13813 Actinidia chinensis HOM05D000371 ORTHO05D006177 2.8e-12 75.5 64 57.8
AUR62015866 Chenopodium quinoa HOM05D000371 ORTHO05D006177 3.7e-12 75.1 63 55.6
AUR62020358 Chenopodium quinoa HOM05D000371 ORTHO05D006177 3.7e-12 75.1 63 55.6
AUR62026129 Chenopodium quinoa HOM05D000371 ORTHO05D006177 3.7e-12 75.1 63 55.6
A07p21930 Brassica napus HOM05D000371 ORTHO05D006177 4.8e-12 74.7 39 79.5
BraA07t29874Z Brassica rapa HOM05D000371 ORTHO05D006177 4.8e-12 74.7 39 79.5
unitig_26.g9094 Utricularia gibba HOM05D000371 ORTHO05D006177 4.8e-12 74.7 47 74.5
BcaC02g09108 Brassica carinata HOM05D000371 ORTHO05D006177 6.2e-12 74.3 46 71.7
MBI14_g02853_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D006177 8.2e-12 73.9 64 59.4
TAR623G0600 Trochodendron aralioides HOM05D000371 ORTHO05D006177 8.2e-12 73.9 65 56.9
Ah.04g166090 Amaranthus hybridus HOM05D000371 ORTHO05D006177 1.1e-11 73.6 64 57.8
ATR0210G001 Amborella trichopoda HOM05D000371 ORTHO05D006177 1.4e-11 73.2 71 54.9
Os03g0367000 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D006177 1.4e-11 73.2 65 55.4
Zm00001eb017910 Zea mays HOM05D000371 ORTHO05D006177 5.3e-11 71.2 65 53.8
HPP92_018046 Vanilla planifolia HOM05D000371 ORTHO05D006177 2.0e-10 69.3 64 51.6
SMO137G0167 Selaginella moellendorffii HOM05D000371 ORTHO05D006177 2.6e-10 68.9 63 54.0
AagrBONN_evm.TU.Sc2ySwM_228.199 Anthoceros agrestis HOM05D000371 ORTHO05D006177 3.4e-10 68.6 68 52.9
CDE04G0830 Ceratophyllum demersum HOM05D000371 ORTHO05D006177 5.8e-10 67.8 66 51.5
Pp3c12_8200 Physcomitrium patens HOM05D000371 ORTHO05D006177 9.3e-08 60.5 64 48.4
Peaxi162Scf00562g00024 Petunia axillaris HOM05D000371 ORTHO05D006177 2.1e-07 59.3 64 57.8
Carub.0005s2060 Capsella rubella HOM05D000371 ORTHO05D006177 4.6e-07 58.2 30 83.3
Actinidia29159 Actinidia chinensis HOM05D000371 ORTHO05D023241 7.9e-07 57.4 32 75.0
BcaB02g07753 Brassica carinata HOM05D000371 ORTHO05D006177 8.7e-06 53.9 30 76.7


User provided reference genes

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