Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0473221 Rosa chinensis HOM05D000371 ORTHO05D023241 5.9e-42 173.7 84 100.0
RcHm_v2.0_Chr3g0473301 Rosa chinensis HOM05D000371 ORTHO05D023241 1.0e-38 162.9 81 96.3
RcHm_v2.0_Chr3g0464491 Rosa chinensis HOM05D000371 ORTHO05D006177 1.4e-19 99.4 66 78.8
FvH4_6g12640 Fragaria vesca HOM05D000371 ORTHO05D006177 6.0e-18 94.0 66 75.8
FAN05G2038 Fragaria x ananassa HOM05D000371 ORTHO05D006177 6.0e-18 94.0 66 74.2
FAN09G2403 Fragaria x ananassa HOM05D000371 ORTHO05D006177 6.0e-18 94.0 66 75.8
FAN14G4066 Fragaria x ananassa HOM05D000371 ORTHO05D006177 6.0e-18 94.0 66 75.8
Ciclev10011305m.g Citrus clementina HOM05D000371 ORTHO05D006177 1.3e-17 92.8 66 72.7
Atru.chr8.2107 Acer truncatum HOM05D000371 ORTHO05D006177 1.7e-17 92.4 47 91.5
GSVIVG01034052001 Vitis vinifera HOM05D000371 ORTHO05D006177 1.7e-17 92.4 64 71.9
CSS0030871 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006177 3.9e-17 91.3 63 65.1
CSS0040865 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006177 3.9e-17 91.3 63 65.1
Cc00_g16740 Coffea canephora HOM05D000371 ORTHO05D006177 2.5e-16 88.6 64 65.6
TWI74G1022 Tripterygium wilfordii HOM05D000371 ORTHO05D006177 2.5e-16 88.6 64 68.8
Haze_20900 Corylus avellana HOM05D000371 ORTHO05D006177 3.3e-16 88.2 63 68.3
Hma1.2p1_0671F.1_g200670 Hydrangea macrophylla HOM05D000371 ORTHO05D006177 3.3e-16 88.2 64 65.6
PGR031G1276 Punica granatum HOM05D000371 ORTHO05D006177 3.3e-16 88.2 65 63.1
Cfa017293 Carpinus fangiana HOM05D000371 ORTHO05D006177 7.3e-16 87.0 46 84.8
ClCG04G007520 Citrullus lanatus HOM05D000371 ORTHO05D006177 9.5e-16 86.7 48 77.1
DCAR_028802 Daucus carota HOM05D000371 ORTHO05D006177 9.5e-16 86.7 48 81.2
Lalb_Chr07g0193201 Lupinus albus HOM05D000371 ORTHO05D006177 9.5e-16 86.7 63 63.5
Sabra16G0104300 Salix brachista HOM05D000371 ORTHO05D006177 9.5e-16 86.7 64 65.6
VMungo0720G2985 Vigna mungo HOM05D000371 ORTHO05D006177 9.5e-16 86.7 64 62.5
arahy.Tifrunner.gnm1.ann1.YWW12F Arachis hypogaea HOM05D000371 ORTHO05D006177 1.2e-15 86.3 64 64.1
BcaC08g44659 Brassica carinata HOM05D000371 ORTHO05D006177 1.2e-15 86.3 46 80.4
C06p21810 Brassica napus HOM05D000371 ORTHO05D006177 1.2e-15 86.3 46 80.4
HanXRQChr06g0176681 Helianthus annuus HOM05D000371 ORTHO05D006177 1.2e-15 86.3 62 66.1
arahy.Tifrunner.gnm1.ann1.23E1K9 Arachis hypogaea HOM05D000371 ORTHO05D006177 1.6e-15 85.9 64 65.6
LjContig00047_ERROPOS266959g0016401 Lotus japonicus HOM05D000371 ORTHO05D006177 1.6e-15 85.9 64 64.1
Manes.15G172300 Manihot esculenta HOM05D000371 ORTHO05D006177 1.6e-15 85.9 65 61.5
Potri.016G105100 Populus trichocarpa HOM05D000371 ORTHO05D006177 1.6e-15 85.9 64 65.6
QL06p037270 Quercus lobata HOM05D000371 ORTHO05D006177 1.6e-15 85.9 65 66.2
Cpa.g.sc56.67 Carica papaya HOM05D000371 ORTHO05D006177 2.1e-15 85.5 64 67.2
Eucgr.C00633 Eucalyptus grandis HOM05D000371 ORTHO05D006177 2.8e-15 85.1 60 66.7
Aa31LG10G8800 Aethionema arabicum HOM05D000371 ORTHO05D006177 3.6e-15 84.7 47 80.9
BraA04t16273Z Brassica rapa HOM05D000371 ORTHO05D006177 3.6e-15 84.7 47 78.7
COL.COLO4_14682 Corchorus olitorius HOM05D000371 ORTHO05D006177 3.6e-15 84.7 64 65.6
Psat7g241000 Pisum sativum HOM05D000371 ORTHO05D006177 3.6e-15 84.7 63 65.1
CiPaw.10G150300 Carya illinoinensis HOM05D000371 ORTHO05D006177 4.7e-15 84.3 64 62.5
CsaV3_4G025730 Cucumis sativus L. HOM05D000371 ORTHO05D006177 4.7e-15 84.3 48 72.9
Duzib093G0786 Durio zibethinus HOM05D000371 ORTHO05D006177 4.7e-15 84.3 65 66.2
MD04G1140300 Malus domestica HOM05D000371 ORTHO05D006177 4.7e-15 84.3 63 66.7
Nitab4.5_0001650g0040 Nicotiana tabacum HOM05D000371 ORTHO05D006177 4.7e-15 84.3 63 65.1
Phvul.007G249700 Phaseolus vulgaris HOM05D000371 ORTHO05D006177 4.7e-15 84.3 64 59.4
AL5G35010 Arabidopsis lyrata HOM05D000371 ORTHO05D006177 6.2e-15 84.0 45 82.2
AT3G54010 Arabidopsis thaliana HOM05D000371 ORTHO05D006177 6.2e-15 84.0 45 82.2
BcaB02g08493 Brassica carinata HOM05D000371 ORTHO05D006177 6.2e-15 84.0 46 80.4
Lj3C959T17 Lonicera japonica HOM05D000371 ORTHO05D006177 6.2e-15 84.0 47 74.5
CARHR163910 Cardamine hirsuta HOM05D000371 ORTHO05D006177 8.1e-15 83.6 45 80.0
Thhalv10010196m.g Eutrema salsugineum HOM05D000371 ORTHO05D006177 8.1e-15 83.6 46 78.3
Nitab4.5_0006562g0050 Nicotiana tabacum HOM05D000371 ORTHO05D006177 8.1e-15 83.6 63 65.1
Thecc.05G027800 Theobroma cacao HOM05D000371 ORTHO05D006177 8.1e-15 83.6 47 74.5
MELO3C003198.2 Cucumis melo HOM05D000371 ORTHO05D006177 1.1e-14 83.2 48 70.8
Glyma.01G106600 Glycine max HOM05D000371 ORTHO05D006177 1.1e-14 83.2 64 62.5
Glyma.03G073714 Glycine max HOM05D000371 ORTHO05D006177 1.1e-14 83.2 64 62.5
Gohir.A09G161700 Gossypium hirsutum HOM05D000371 ORTHO05D006177 1.1e-14 83.2 46 78.3
Gohir.D09G157300 Gossypium hirsutum HOM05D000371 ORTHO05D006177 1.1e-14 83.2 46 78.3
Gorai.006G178900 Gossypium raimondii HOM05D000371 ORTHO05D006177 1.1e-14 83.2 46 78.3
Solyc11g011420.3 Solanum lycopersicum HOM05D000371 ORTHO05D006177 1.1e-14 83.2 63 63.5
A04p05770 Brassica napus HOM05D002554 ORTHO05D006177 1.4e-14 82.8 47 76.6
Lsat_1_v5_gn_8_80801 Lactuca sativa HOM05D000371 ORTHO05D006177 1.4e-14 82.8 63 63.5
TPR.G17889 Trifolium pratense HOM05D000371 ORTHO05D006177 1.4e-14 82.8 61 62.3
MSTRG.5620 Avicennia marina HOM05D000371 ORTHO05D006177 1.8e-14 82.4 64 62.5
CAN.G222.59 Capsicum annuum HOM05D000371 ORTHO05D006177 1.8e-14 82.4 63 65.1
HanXRQChr08g0229871 Helianthus annuus HOM05D000371 ORTHO05D023241 1.8e-14 82.4 47 76.6
Oeu030546.3 Olea europaea HOM05D000371 ORTHO05D006177 1.8e-14 82.4 64 57.8
vmacro20202 Vaccinium macrocarpon HOM05D000371 ORTHO05D006177 1.8e-14 82.4 63 63.5
BolC6t37369H Brassica oleracea HOM05D000371 ORTHO05D006177 2.4e-14 82.0 45 77.8
PSO384G0158 Papaver somniferum HOM05D000371 ORTHO05D006177 2.4e-14 82.0 64 62.5
TAR369G0679 Trochodendron aralioides HOM05D000371 ORTHO05D006177 2.4e-14 82.0 64 62.5
MD12G1155600 Malus domestica HOM05D000371 ORTHO05D006177 3.1e-14 81.6 61 63.9
Sp5g08380 Schrenkiella parvula HOM05D000371 ORTHO05D006177 3.1e-14 81.6 44 79.5
Sopen11g006220 Solanum pennellii HOM05D000371 ORTHO05D006177 3.1e-14 81.6 63 63.5
ECA236G3449 Erigeron canadensis HOM05D000371 ORTHO05D006177 4.0e-14 81.3 63 60.3
THA.LOC104806536 Tarenaya hassleriana HOM05D000371 ORTHO05D006177 4.0e-14 81.3 64 62.5
Sed0006661 Sechium edule HOM05D000371 ORTHO05D006177 5.2e-14 80.9 47 72.3
SGA_v2.0_scaffold85G26809 Striga asiatica HOM05D000371 ORTHO05D006177 5.2e-14 80.9 48 70.8
Duzib106G1179 Durio zibethinus HOM05D000371 ORTHO05D006177 6.8e-14 80.5 46 78.3
SalBow8G2887 Salvia bowleyana HOM05D000371 ORTHO05D006177 6.8e-14 80.5 64 59.4
Ca_03543_v3 Cicer arietinum L. HOM05D000371 ORTHO05D006177 8.9e-14 80.1 46 78.3
Prupe.6G265400 Prunus persica HOM05D000371 ORTHO05D006177 8.9e-14 80.1 65 63.1
Medtr4g055500 Medicago truncatula HOM05D000371 ORTHO05D006177 1.2e-13 79.7 62 62.9
Nitab4.5_0001088g0110 Nicotiana tabacum HOM05D000371 ORTHO05D023241 1.2e-13 79.7 47 76.6
Hund02037 Selenicereus undatus HOM05D000371 ORTHO05D006177 1.5e-13 79.3 64 57.8
Nn2g15155 Nelumbo nucifera HOM05D000371 ORTHO05D006177 2.6e-13 78.6 65 61.5
Aqoxy1G00785 Aquilegia oxysepala HOM05D000371 ORTHO05D006177 3.4e-13 78.2 64 62.5
CANSAT01G2772 Cannabis sativa HOM05D000371 ORTHO05D006177 3.4e-13 78.2 46 73.9
PSO339G3206 Papaver somniferum HOM05D000371 ORTHO05D006177 3.4e-13 78.2 64 60.9
EL10Ac4g07709 Beta vulgaris HOM05D000371 ORTHO05D006177 4.4e-13 77.8 63 55.6
Rhsim05G0200700 Rhododendron simsii HOM05D000371 ORTHO05D006177 4.4e-13 77.8 41 82.9
C04p38550 Brassica napus HOM05D002554 ORTHO05D006177 9.9e-13 76.6 47 72.3
BolC4t25430H Brassica oleracea HOM05D002554 ORTHO05D006177 9.9e-13 76.6 47 72.3
Actinidia13813 Actinidia chinensis HOM05D000371 ORTHO05D006177 2.2e-12 75.5 63 55.6
AUR62015866 Chenopodium quinoa HOM05D000371 ORTHO05D006177 2.2e-12 75.5 63 55.6
AUR62020358 Chenopodium quinoa HOM05D000371 ORTHO05D006177 2.2e-12 75.5 63 55.6
AUR62026129 Chenopodium quinoa HOM05D000371 ORTHO05D006177 2.2e-12 75.5 63 55.6
A07p21930 Brassica napus HOM05D000371 ORTHO05D006177 2.9e-12 75.1 39 79.5
BraA07t29874Z Brassica rapa HOM05D000371 ORTHO05D006177 2.9e-12 75.1 39 79.5
unitig_26.g9094 Utricularia gibba HOM05D000371 ORTHO05D006177 2.9e-12 75.1 47 74.5
BcaC02g09108 Brassica carinata HOM05D000371 ORTHO05D006177 3.8e-12 74.7 46 71.7
MBI14_g02853_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D006177 4.9e-12 74.3 63 57.1
TAR623G0600 Trochodendron aralioides HOM05D000371 ORTHO05D006177 4.9e-12 74.3 65 56.9
Ah.04g166090 Amaranthus hybridus HOM05D000371 ORTHO05D006177 8.4e-12 73.6 63 55.6
ATR0210G001 Amborella trichopoda HOM05D000371 ORTHO05D006177 1.4e-11 72.8 70 52.9
Os03g0367000 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D006177 1.9e-11 72.4 66 54.5
Zm00001eb017910 Zea mays HOM05D000371 ORTHO05D006177 7.1e-11 70.5 66 51.5
HPP92_018046 Vanilla planifolia HOM05D000371 ORTHO05D006177 1.2e-10 69.7 64 51.6
AagrBONN_evm.TU.Sc2ySwM_228.199 Anthoceros agrestis HOM05D000371 ORTHO05D006177 1.6e-10 69.3 69 50.7
CDE04G0830 Ceratophyllum demersum HOM05D000371 ORTHO05D006177 2.7e-10 68.6 66 51.5
SMO137G0167 Selaginella moellendorffii HOM05D000371 ORTHO05D006177 1.0e-09 66.6 63 52.4
Pp3c12_8200 Physcomitrium patens HOM05D000371 ORTHO05D006177 1.1e-08 63.2 64 48.4
Peaxi162Scf00562g00024 Petunia axillaris HOM05D000371 ORTHO05D006177 2.1e-07 58.9 63 55.6
Carub.0005s2060 Capsella rubella HOM05D000371 ORTHO05D006177 2.8e-07 58.5 30 83.3
Actinidia29159 Actinidia chinensis HOM05D000371 ORTHO05D023241 4.7e-07 57.8 32 75.0
BcaB02g07753 Brassica carinata HOM05D000371 ORTHO05D006177 5.2e-06 54.3 30 76.7


User provided reference genes

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