Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 7.5e-175 617.1 312 100.0
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.1e-161 572.4 312 91.3
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 8.1e-161 570.5 312 91.3
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 6.8e-160 567.4 312 90.4
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 6.6e-155 550.8 321 87.2
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.0e-134 483.8 269 90.7
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 4.6e-132 474.9 312 74.4
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 3.0e-131 472.2 312 73.7
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 1.4e-112 410.2 309 64.7
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 4.1e-112 408.7 307 64.5
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 6.9e-112 407.9 308 64.0
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 9.1e-112 407.5 307 64.2
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 1.5e-111 406.8 312 65.4
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 2.0e-111 406.4 308 65.9
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 2.6e-111 406.0 307 65.8
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 2.6e-111 406.0 309 63.4
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 2.6e-111 406.0 306 63.7
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 2.6e-111 406.0 309 64.1
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 7.7e-111 404.4 311 65.0
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 1.0e-110 404.1 308 65.3
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.3e-110 403.7 309 63.4
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 6.5e-110 401.4 332 60.2
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 7.2e-109 397.9 307 64.2
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 1.6e-108 396.7 302 63.6
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.6e-108 396.7 309 62.5
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 2.7e-108 396.0 310 64.2
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 2.7e-108 396.0 309 62.1
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 1.4e-107 393.7 308 64.6
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 1.5e-106 390.2 308 62.3
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 1.5e-106 390.2 312 62.5
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 2.0e-106 389.8 309 63.8
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 3.3e-106 389.0 306 61.8
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 9.7e-106 387.5 310 62.6
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 9.7e-106 387.5 308 62.0
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.3e-105 387.1 311 62.7
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 1.7e-105 386.7 312 62.8
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 1.7e-105 386.7 311 61.1
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 2.2e-105 386.3 302 63.6
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 2.6e-103 379.4 307 62.2
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 3.5e-103 379.0 309 60.5
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 1.0e-102 377.5 305 60.0
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 1.3e-102 377.1 306 60.5
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 2.2e-102 376.3 311 60.8
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 2.2e-102 376.3 308 60.7
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 2.9e-102 375.9 306 60.1
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 3.8e-102 375.6 306 59.8
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 5.0e-102 375.2 304 59.9
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 1.9e-101 373.2 306 59.8
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 3.2e-101 372.5 308 59.4
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 7.2e-101 371.3 308 60.4
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 1.6e-100 370.2 309 58.9
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 2.7e-100 369.4 307 60.6
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 4.7e-100 368.6 308 60.7
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 6.1e-100 368.2 308 60.7
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 1.8e-99 366.7 304 60.2
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 3.0e-99 365.9 311 60.1
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 4.0e-99 365.5 336 56.8
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 5.2e-99 365.2 311 60.1
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 5.2e-99 365.2 311 60.1
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 8.8e-99 364.4 308 60.1
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 8.8e-99 364.4 308 58.4
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 8.8e-99 364.4 310 60.0
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 2.8e-97 359.4 306 57.2
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 3.7e-97 359.0 309 58.6
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 1.8e-96 356.7 295 58.0
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 3.1e-96 355.9 309 58.6
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 9.1e-96 354.4 313 58.1
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 3.8e-94 349.0 310 57.1
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 8.5e-94 347.8 309 54.7
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 3.2e-93 345.9 303 55.8
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 5.5e-93 345.1 224 75.4
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 2.3e-91 339.7 278 62.2
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 8.8e-91 337.8 298 57.4
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 4.4e-90 335.5 308 55.5
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 1.3e-89 334.0 305 54.8
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 6.3e-89 331.6 273 62.6
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 9.1e-88 327.8 291 56.0
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.2e-87 327.4 304 54.9
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 2.0e-87 326.6 268 62.3
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 1.0e-86 324.3 272 63.6
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 8.5e-86 321.2 310 53.5
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 4.0e-83 312.4 319 52.0
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 1.5e-82 310.5 305 52.5
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 1.6e-79 300.4 306 53.6
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 5.9e-79 298.5 306 51.0
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 1.1e-77 294.3 231 62.8
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 5.6e-77 292.0 241 61.0
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 1.2e-76 290.8 309 50.5
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 8.0e-76 288.1 259 55.6
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 3.4e-74 282.7 271 53.5
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 1.8e-72 276.9 269 53.2
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 2.4e-72 276.6 221 59.7
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 4.1e-72 275.8 241 61.0
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.2e-71 274.2 286 54.2
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 1.9e-64 250.4 255 51.0
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 2.0e-63 246.9 316 42.7
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 1.1e-59 234.6 306 41.5
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 1.4e-59 234.2 220 55.5
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 5.2e-59 232.3 306 44.8
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 3.7e-57 226.1 207 54.1
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 1.1e-56 224.6 323 39.3
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 8.6e-54 214.9 302 40.7
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 7.3e-53 211.8 192 58.9
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 8.9e-51 204.9 303 41.3
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 2.0e-50 203.8 151 60.3
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 1.5e-45 187.6 227 47.1
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 1.2e-44 184.5 184 52.2
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 4.9e-41 172.6 187 48.7
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 5.4e-40 169.1 113 64.6
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 9.3e-40 168.3 318 33.3
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 1.0e-38 164.9 157 55.4
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 1.3e-38 164.5 168 50.0
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 3.3e-37 159.8 254 41.3
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 1.5e-34 151.0 162 50.0
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 4.6e-31 139.4 107 59.8
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 5.1e-30 136.0 160 47.5
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 1.3e-25 121.3 89 58.4
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 2.7e-23 113.6 72 65.3
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 3.9e-22 109.8 166 40.4
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.5e-21 107.8 179 39.1
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 5.6e-21 105.9 120 45.0
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 5.6e-21 105.9 74 63.5
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.6e-20 104.4 74 62.2
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 2.0e-18 97.4 145 38.6
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 2.9e-17 93.6 115 42.6
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 7.9e-15 85.5 70 50.0
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.9e-13 80.9 194 34.5
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 3.3e-13 80.1 135 37.0
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 5.3e-11 72.8 106 37.7
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 2.1e-07 60.8 37 75.7


User provided reference genes

Program Settings