Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 2.8e-28 127.9 63 100.0
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 3.0e-14 81.3 40 92.5
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.0e-14 81.3 40 92.5
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.0e-14 81.3 40 92.5
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 3.0e-14 81.3 40 92.5
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 3.0e-14 81.3 40 92.5
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 4.3e-13 77.4 40 87.5
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 9.7e-13 76.3 48 68.8
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.3e-12 75.9 40 85.0
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 1.3e-12 75.9 40 85.0
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.2e-12 75.1 40 87.5
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 2.8e-12 74.7 40 85.0
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 2.8e-12 74.7 40 85.0
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 3.7e-12 74.3 41 82.9
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.7e-12 74.3 40 85.0
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 4.8e-12 73.9 40 85.0
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 4.8e-12 73.9 40 85.0
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 6.3e-12 73.6 40 80.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 6.3e-12 73.6 40 85.0
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 6.3e-12 73.6 40 82.5
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.3e-12 73.6 40 80.0
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 8.2e-12 73.2 40 85.0
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 8.2e-12 73.2 40 82.5
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 8.2e-12 73.2 40 85.0
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 8.2e-12 73.2 40 80.0
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 8.2e-12 73.2 41 82.9
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.1e-11 72.8 40 82.5
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.1e-11 72.8 40 85.0
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.1e-11 72.8 40 82.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.1e-11 72.8 40 82.5
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.1e-11 72.8 40 82.5
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 1.4e-11 72.4 40 80.0
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.4e-11 72.4 40 80.0
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.4e-11 72.4 41 82.9
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.8e-11 72.0 40 82.5
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.8e-11 72.0 40 77.5
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 1.8e-11 72.0 40 80.0
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 1.8e-11 72.0 40 80.0
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.8e-11 72.0 40 82.5
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.8e-11 72.0 40 80.0
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.4e-11 71.6 40 80.0
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 2.4e-11 71.6 40 82.5
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.4e-11 71.6 40 82.5
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.4e-11 71.6 40 82.5
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.4e-11 71.6 40 82.5
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.4e-11 71.6 40 82.5
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.4e-11 71.6 40 82.5
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 2.4e-11 71.6 40 80.0
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 3.1e-11 71.2 40 80.0
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 3.1e-11 71.2 40 80.0
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 3.1e-11 71.2 40 80.0
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 3.1e-11 71.2 40 77.5
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.1e-11 71.2 40 82.5
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.1e-11 71.2 40 77.5
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 4.1e-11 70.9 40 80.0
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 4.1e-11 70.9 40 80.0
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 4.1e-11 70.9 40 80.0
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.1e-11 70.9 40 77.5
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 4.1e-11 70.9 40 82.5
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 5.3e-11 70.5 40 80.0
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 5.3e-11 70.5 40 80.0
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 5.3e-11 70.5 41 78.0
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.3e-11 70.5 40 82.5
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.3e-11 70.5 40 82.5
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 5.3e-11 70.5 40 80.0
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 5.3e-11 70.5 40 80.0
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 5.3e-11 70.5 40 80.0
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 6.9e-11 70.1 40 80.0
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.9e-11 70.1 40 80.0
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 6.9e-11 70.1 40 80.0
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 6.9e-11 70.1 40 77.5
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 6.9e-11 70.1 40 80.0
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 6.9e-11 70.1 40 80.0
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 9.1e-11 69.7 40 75.0
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 9.1e-11 69.7 40 77.5
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 9.1e-11 69.7 40 77.5
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 9.1e-11 69.7 40 77.5
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 9.1e-11 69.7 40 77.5
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.2e-10 69.3 40 77.5
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.2e-10 69.3 40 75.0
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-10 69.3 40 80.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 1.2e-10 69.3 40 77.5
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.2e-10 69.3 40 75.0
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.2e-10 69.3 40 77.5
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 1.2e-10 69.3 40 77.5
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.2e-10 69.3 40 77.5
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 1.5e-10 68.9 40 77.5
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.5e-10 68.9 40 77.5
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.5e-10 68.9 40 77.5
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.5e-10 68.9 40 77.5
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.5e-10 68.9 40 77.5
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.5e-10 68.9 40 77.5
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.5e-10 68.9 40 77.5
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.5e-10 68.9 40 77.5
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.5e-10 68.9 40 77.5
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 2.0e-10 68.6 40 77.5
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 2.0e-10 68.6 41 75.6
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 2.0e-10 68.6 40 80.0
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 2.6e-10 68.2 40 75.0
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 2.6e-10 68.2 40 80.0
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 2.6e-10 68.2 40 77.5
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 2.6e-10 68.2 40 75.0
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 3.4e-10 67.8 40 72.5
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 3.4e-10 67.8 40 80.0
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 3.4e-10 67.8 40 75.0
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 4.5e-10 67.4 40 75.0
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 4.5e-10 67.4 40 77.5
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 5.9e-10 67.0 40 72.5
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 5.9e-10 67.0 40 75.0
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 7.7e-10 66.6 40 72.5
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.0e-09 66.2 40 75.0
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.0e-09 66.2 40 77.5
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.0e-09 66.2 40 72.5
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.7e-09 65.5 37 78.4
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.7e-09 65.5 40 72.5
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 2.2e-09 65.1 40 72.5
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.2e-09 65.1 40 70.0
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.9e-09 64.7 40 70.0
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 3.8e-09 64.3 40 72.5
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 5.0e-09 63.9 40 72.5
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 6.5e-09 63.5 40 70.0
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 6.5e-09 63.5 40 70.0
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 8.5e-09 63.2 40 70.0
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 8.5e-09 63.2 40 70.0
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.1e-08 62.8 40 72.5
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.1e-08 62.8 40 70.0
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 1.4e-08 62.4 41 68.3
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.4e-08 62.4 40 65.0
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.9e-08 62.0 40 67.5
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.9e-08 62.0 36 72.2
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 2.5e-08 61.6 40 70.0
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 2.5e-08 61.6 40 67.5
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 3.2e-08 61.2 40 67.5
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 3.2e-08 61.2 40 70.0
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 3.2e-08 61.2 40 65.0
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 4.2e-08 60.8 40 65.0
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.2e-08 60.8 40 65.0
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 4.2e-08 60.8 40 67.5
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 5.5e-08 60.5 40 65.0
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 5.5e-08 60.5 41 65.9
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.2e-07 59.3 40 65.0
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.6e-07 58.9 40 62.5
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.1e-07 58.5 41 65.9
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 2.7e-07 58.2 41 63.4
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 2.7e-07 58.2 40 65.0
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 3.6e-07 57.8 40 65.0
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 3.6e-07 57.8 40 65.0
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 3.6e-07 57.8 40 65.0
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.6e-07 57.8 40 62.5
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 3.6e-07 57.8 40 65.0
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 4.6e-07 57.4 40 67.5
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 7.9e-07 56.6 40 60.0
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 7.9e-07 56.6 40 62.5
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 7.9e-07 56.6 40 62.5
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.8e-06 55.5 40 60.0
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 1.8e-06 55.5 40 60.0
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 5.1e-06 53.9 40 62.5


User provided reference genes

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