Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 3.3e-287 991.1 533 100.0
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.3e-254 882.9 535 86.9
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.1e-253 879.8 499 91.4
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 5.3e-253 877.5 500 91.2
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.7e-251 872.5 566 82.5
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.4e-250 869.4 498 90.6
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 2.1e-249 865.5 496 90.7
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.6e-233 811.6 498 86.3
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 1.0e-208 730.3 501 78.6
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 5.9e-196 688.0 501 74.3
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 3.5e-180 635.6 483 71.4
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 6.9e-136 488.4 507 57.4
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 2.3e-131 473.4 500 57.8
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 1.5e-122 444.1 497 55.7
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 1.9e-117 427.2 505 52.3
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 1.0e-115 421.4 501 52.5
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 8.2e-113 411.8 499 51.7
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 4.5e-111 406.0 502 51.0
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 4.5e-111 406.0 527 50.1
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 7.7e-111 405.2 509 49.9
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 6.5e-110 402.1 496 50.0
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 3.9e-107 392.9 498 49.6
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 2.8e-105 386.7 498 48.6
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 4.8e-105 386.0 505 49.1
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 5.2e-99 365.9 500 47.2
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 2.2e-97 360.5 507 47.5
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 2.9e-86 323.6 500 44.4
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 2.6e-82 310.5 494 43.9
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 2.9e-81 307.0 397 49.6
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 4.9e-81 306.2 509 44.0
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 1.4e-80 304.7 396 49.5
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 4.1e-80 303.1 512 44.1
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 9.2e-80 302.0 501 42.5
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 1.2e-79 301.6 509 44.0
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 1.6e-79 301.2 499 42.3
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 1.1e-77 295.0 578 40.3
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 1.1e-77 295.0 503 42.7
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 4.3e-77 293.1 509 42.8
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 1.3e-73 281.6 492 41.7
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 1.7e-73 281.2 553 40.3
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 1.6e-71 274.6 566 39.6
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 3.5e-71 273.5 371 47.2
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 4.6e-71 273.1 566 39.2
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 5.0e-70 269.6 504 39.7
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 1.5e-69 268.1 566 38.2
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 2.5e-69 267.3 323 51.7
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 2.5e-69 267.3 490 40.2
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 3.3e-69 266.9 500 40.8
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 3.3e-69 266.9 490 41.0
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 5.6e-69 266.2 494 40.5
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 5.6e-69 266.2 517 39.5
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 2.6e-66 257.3 515 40.0
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 9.8e-66 255.4 493 39.4
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 1.3e-65 255.0 496 40.7
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 2.9e-65 253.8 499 41.3
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 4.9e-65 253.1 499 40.9
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 6.4e-65 252.7 506 40.3
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 6.4e-65 252.7 501 37.5
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 1.6e-63 248.1 490 41.0
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 7.8e-63 245.7 497 38.4
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 1.3e-62 245.0 498 36.7
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 3.9e-62 243.4 525 38.3
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 8.1e-60 235.7 517 37.7
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 4.0e-59 233.4 529 37.4
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 6.8e-59 232.6 490 39.2
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 6.4e-57 226.1 490 36.7
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 1.5e-53 214.9 279 49.5
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 8.9e-51 205.7 524 35.1
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 8.9e-51 205.7 460 36.3
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 1.1e-48 198.7 382 38.0
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 4.6e-47 193.4 490 35.5
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 1.3e-46 191.8 323 39.0
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 6.6e-46 189.5 362 37.8
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 1.5e-45 188.3 432 36.1
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 3.3e-45 187.2 390 38.2
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 3.3e-45 187.2 390 38.2
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 8.1e-44 182.6 396 38.4
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 2.4e-43 181.0 459 35.3
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 4.0e-43 180.3 483 33.3
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 4.0e-43 180.3 398 37.2
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 3.4e-42 177.2 382 33.5
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 1.7e-41 174.9 501 33.7
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 3.2e-40 170.6 497 33.8
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 7.1e-40 169.5 499 33.5
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 3.5e-39 167.2 397 36.3
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 3.9e-38 163.7 407 33.7
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 7.3e-37 159.5 326 40.5
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 1.3e-36 158.7 374 36.9
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 4.0e-35 153.7 500 33.8
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 5.8e-34 149.8 204 49.0
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 4.2e-32 143.7 401 34.7
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 6.0e-31 139.8 335 31.9
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 6.0e-31 139.8 493 29.2
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 1.5e-29 135.2 388 33.5
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.6e-28 131.7 177 49.7
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 1.8e-27 128.3 145 50.3
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 2.4e-27 127.9 390 32.8
Ca_08983_v3 Cicer arietinum L. HOM05D005512 ORTHO05D006716 3.1e-27 127.5 438 29.2
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 1.7e-25 121.7 145 49.0
QL07p039646 Quercus lobata HOM05D005512 ORTHO05D006716 8.4e-25 119.4 337 30.9
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 9.3e-24 115.9 340 32.9
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 1.0e-22 112.5 355 33.0
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 1.3e-20 105.5 224 37.1
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 1.3e-20 105.5 178 44.4
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 4.8e-20 103.6 378 30.7
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 4.8e-20 103.6 202 37.1
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 1.4e-19 102.1 373 30.0
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 6.9e-19 99.8 293 35.8
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 1.2e-18 99.0 279 31.9
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 1.5e-18 98.6 228 36.0
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 1.5e-18 98.6 176 41.5
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 2.6e-18 97.8 138 47.8
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 3.4e-18 97.4 174 40.2
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 4.2e-16 90.5 198 36.9
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 3.5e-15 87.4 393 28.2
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 1.0e-14 85.9 189 35.4
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 1.5e-13 82.0 87 54.0
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 1.3e-12 79.0 90 50.0
Actinidia02438 Actinidia chinensis HOM05D005512 ORTHO05D006716 4.8e-12 77.0 128 43.0
Atru.chr8.1591 Acer truncatum HOM05D005512 ORTHO05D006716 2.4e-11 74.7 50 74.0
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 2.6e-10 71.2 143 37.1
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 3.4e-10 70.9 153 37.9
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 3.4e-10 70.9 162 37.7
BcaC05g25849 Brassica carinata HOM05D005512 ORTHO05D006716 7.7e-10 69.7 127 43.3
ATR0820G116 Amborella trichopoda HOM05D005512 ORTHO05D006716 3.8e-09 67.4 179 36.9
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 5.5e-08 63.5 126 38.9
SMO351G0354 Selaginella moellendorffii HOM05D005512 ORTHO05D006716 3.6e-07 60.8 110 41.8
Mapoly0016s0098 Marchantia polymorpha HOM05D005512 ORTHO05D006716 6.1e-07 60.1 124 36.3
Sc07g0005480 Simmondsia chinensis HOM05D005512 ORTHO05D006716 1.8e-06 58.5 172 34.3


User provided reference genes

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