Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.1e-37 159.5 79 100.0
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 5.2e-32 140.6 80 88.8
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.2e-32 140.6 80 88.8
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.8e-31 137.1 80 87.5
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.8e-31 137.1 80 87.5
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-29 132.1 79 83.5
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 2.6e-15 85.1 81 58.0
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 3.4e-15 84.7 73 58.9
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 7.6e-15 83.6 94 54.3
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 9.9e-15 83.2 81 58.0
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.8e-14 81.3 91 49.5
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 6.4e-14 80.5 74 62.2
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.4e-14 80.5 40 90.0
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 1.9e-13 79.0 80 55.0
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.2e-13 78.2 81 53.1
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 3.2e-13 78.2 87 49.4
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 3.2e-13 78.2 90 50.0
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.4e-13 77.4 89 53.9
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 7.1e-13 77.0 94 52.1
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 9.3e-13 76.6 80 51.2
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.2e-12 76.3 78 53.8
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 4.6e-12 74.3 97 51.5
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 4.6e-12 74.3 83 50.6
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.0e-11 73.2 88 47.7
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-11 72.8 88 46.6
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.3e-11 72.8 89 51.7
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.8e-11 72.4 97 46.4
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 5.1e-11 70.9 85 48.2
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 6.7e-11 70.5 83 50.6
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 8.7e-11 70.1 89 47.2
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 8.7e-11 70.1 96 51.0
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 8.7e-11 70.1 66 54.5
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.1e-10 69.7 81 48.1
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.1e-10 69.7 82 46.3
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 2.5e-10 68.6 39 76.9
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.5e-10 68.6 51 68.6
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.5e-10 68.6 86 46.5
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.5e-10 68.6 91 44.0
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 2.5e-10 68.6 85 50.6
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.3e-10 68.2 91 44.0
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.3e-10 68.2 89 47.2
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 3.3e-10 68.2 80 47.5
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 3.3e-10 68.2 90 48.9
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 4.3e-10 67.8 38 81.6
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 4.3e-10 67.8 37 78.4
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.4e-10 67.0 85 42.4
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 7.4e-10 67.0 82 48.8
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 7.4e-10 67.0 85 47.1
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 7.4e-10 67.0 85 47.1
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.4e-10 67.0 49 61.2
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.4e-10 67.0 89 47.2
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 7.4e-10 67.0 91 47.3
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 9.6e-10 66.6 91 46.2
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 9.6e-10 66.6 81 51.9
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 9.6e-10 66.6 52 61.5
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 9.6e-10 66.6 96 43.8
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.3e-09 66.2 83 44.6
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.3e-09 66.2 97 45.4
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.6e-09 65.9 92 47.8
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.1e-09 65.5 88 44.3
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.1e-09 65.5 91 42.9
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 2.8e-09 65.1 57 56.1
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.8e-09 65.1 90 43.3
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.8e-09 65.1 88 46.6
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.8e-09 65.1 41 63.4
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 3.7e-09 64.7 91 44.0
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.7e-09 64.7 87 40.2
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.7e-09 64.7 87 43.7
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.7e-09 64.7 39 74.4
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 3.7e-09 64.7 41 68.3
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 3.7e-09 64.7 47 63.8
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 3.7e-09 64.7 64 51.6
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 4.8e-09 64.3 81 49.4
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 4.8e-09 64.3 90 41.1
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 4.8e-09 64.3 87 44.8
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 4.8e-09 64.3 40 75.0
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.8e-09 64.3 38 71.1
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.2e-09 63.9 51 58.8
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.2e-09 63.9 94 44.7
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 8.1e-09 63.5 91 44.0
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 8.1e-09 63.5 94 43.6
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 8.1e-09 63.5 92 40.2
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 1.1e-08 63.2 50 60.0
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 1.1e-08 63.2 34 82.4
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 1.1e-08 63.2 89 43.8
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.1e-08 63.2 38 71.1
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.4e-08 62.8 39 71.8
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.4e-08 62.8 94 43.6
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.4e-08 62.8 92 42.4
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.4e-08 62.8 93 45.2
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.4e-08 62.8 83 49.4
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 1.8e-08 62.4 84 42.9
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 1.8e-08 62.4 84 42.9
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 1.8e-08 62.4 87 42.5
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.8e-08 62.4 90 42.2
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.8e-08 62.4 34 79.4
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 2.4e-08 62.0 89 42.7
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.4e-08 62.0 96 42.7
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.4e-08 62.0 96 42.7
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.4e-08 62.0 36 75.0
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 3.1e-08 61.6 89 43.8
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 3.1e-08 61.6 35 74.3
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 3.1e-08 61.6 85 43.5
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 3.1e-08 61.6 49 57.1
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 3.1e-08 61.6 35 71.4
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 3.1e-08 61.6 93 43.0
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 4.0e-08 61.2 48 60.4
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 5.3e-08 60.8 90 45.6
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 5.3e-08 60.8 89 40.4
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 6.9e-08 60.5 93 45.2
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 6.9e-08 60.5 87 44.8
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 6.9e-08 60.5 38 68.4
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 6.9e-08 60.5 37 70.3
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 9.0e-08 60.1 95 44.2
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 9.0e-08 60.1 38 73.7
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 9.0e-08 60.1 90 43.3
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 9.0e-08 60.1 46 58.7
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 9.0e-08 60.1 93 43.0
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.0e-08 60.1 94 40.4
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.2e-07 59.7 41 65.9
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.2e-07 59.7 37 73.0
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.2e-07 59.7 37 73.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.2e-07 59.7 37 73.0
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.2e-07 59.7 37 73.0
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 1.2e-07 59.7 46 65.2
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.2e-07 59.7 36 69.4
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 1.2e-07 59.7 81 44.4
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.2e-07 59.7 94 43.6
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.5e-07 59.3 36 75.0
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 2.0e-07 58.9 32 75.0
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 2.0e-07 58.9 36 72.2
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 2.6e-07 58.5 95 44.2
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 2.6e-07 58.5 50 52.0
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.6e-07 58.5 90 46.7
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.6e-07 58.5 76 46.1
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 3.4e-07 58.2 32 78.1
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 3.4e-07 58.2 90 43.3
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.4e-07 58.2 74 45.9
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 3.4e-07 58.2 37 70.3
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.4e-07 58.2 93 43.0
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 4.5e-07 57.8 88 42.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 4.5e-07 57.8 94 41.5
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 4.5e-07 57.8 52 57.7
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 4.5e-07 57.8 94 41.5
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 5.8e-07 57.4 86 44.2
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.8e-07 57.4 38 68.4
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.8e-07 57.4 97 44.3
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.8e-07 57.4 84 41.7
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.8e-07 57.4 38 63.2
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 7.6e-07 57.0 58 48.3
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 7.6e-07 57.0 38 68.4
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 7.6e-07 57.0 38 68.4
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 9.9e-07 56.6 85 41.2
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 9.9e-07 56.6 84 41.7
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.3e-06 56.2 45 57.8
Lj5g0025862 Lotus japonicus HOM05D001756 ORTHO05D001581 1.3e-06 56.2 83 41.0
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 1.7e-06 55.8 75 44.0
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 1.7e-06 55.8 70 44.3
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 2.2e-06 55.5 39 59.0
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.2e-06 55.5 38 65.8
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.2e-06 55.5 37 70.3
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 2.2e-06 55.5 37 70.3
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.2e-06 55.5 37 70.3
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 2.9e-06 55.1 53 52.8
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 2.9e-06 55.1 47 53.2
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 3.8e-06 54.7 96 41.7
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 3.8e-06 54.7 96 41.7
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 3.8e-06 54.7 98 43.9
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 3.8e-06 54.7 78 46.2
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.9e-06 54.3 90 41.1
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.4e-06 53.9 95 38.9
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 6.4e-06 53.9 52 57.7
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 6.4e-06 53.9 33 75.8
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 8.4e-06 53.5 44 59.1
ECA240G4721 Erigeron canadensis HOM05D006380 ORTHO05D008400 8.4e-06 53.5 41 58.5
FAN27G0458 Fragaria x ananassa HOM05D001756 ORTHO05D001581 8.4e-06 53.5 84 44.0


User provided reference genes

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