Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 1.3e-153 546.2 256 100.0
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 4.5e-149 531.2 256 96.9
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 9.9e-149 530.0 252 97.6
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.9e-148 528.5 252 97.2
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 4.9e-148 527.7 252 97.2
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 1.9e-136 489.2 255 87.8
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 7.4e-136 487.3 254 87.8
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 1.6e-135 486.1 253 87.0
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 2.0e-133 479.2 254 87.4
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 4.2e-131 471.5 256 83.2
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 9.3e-131 470.3 252 85.3
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 1.6e-130 469.5 255 85.1
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 5.1e-129 464.5 250 86.0
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 1.5e-128 463.0 250 84.0
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 1.9e-128 462.6 251 86.1
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 1.7e-127 459.5 246 85.0
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.8e-127 458.8 251 84.5
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 2.8e-127 458.8 252 83.7
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 8.2e-127 457.2 246 84.6
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 1.1e-126 456.8 252 84.5
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 1.8e-126 456.1 250 84.8
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.1e-126 455.3 255 80.4
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 4.1e-126 454.9 241 85.5
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 4.1e-126 454.9 244 85.2
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 5.3e-126 454.5 253 81.8
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 5.3e-126 454.5 252 81.7
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 9.1e-126 453.8 243 84.4
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 9.1e-126 453.8 254 81.5
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 9.1e-126 453.8 251 84.5
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 1.2e-125 453.4 254 82.3
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.5e-125 453.0 252 81.7
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.5e-125 453.0 243 83.5
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 2.0e-125 452.6 246 82.9
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 2.0e-125 452.6 244 84.8
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.6e-125 452.2 257 80.9
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 4.5e-125 451.4 250 82.8
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 4.5e-125 451.4 250 83.2
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 7.7e-125 450.7 251 82.5
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 7.7e-125 450.7 253 81.8
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 7.7e-125 450.7 243 82.7
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.7e-124 449.5 252 82.5
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 1.7e-124 449.5 251 80.1
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 2.2e-124 449.1 242 85.5
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 2.2e-124 449.1 235 86.8
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 2.9e-124 448.7 241 85.1
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 3.8e-124 448.4 255 80.0
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 5.0e-124 448.0 236 84.3
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 6.5e-124 447.6 246 82.1
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 8.5e-124 447.2 255 81.2
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.1e-123 446.8 248 81.5
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 1.9e-123 446.0 255 81.2
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.9e-123 446.0 247 82.2
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 2.5e-123 445.7 250 81.6
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 5.5e-123 444.5 248 81.0
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 7.2e-123 444.1 247 81.8
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 7.2e-123 444.1 234 85.9
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 9.4e-123 443.7 247 81.8
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 9.4e-123 443.7 245 79.2
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 9.4e-123 443.7 241 83.8
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.6e-122 443.0 253 80.2
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.7e-122 442.2 252 79.4
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 3.6e-122 441.8 242 81.4
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 3.6e-122 441.8 233 84.1
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 6.1e-122 441.0 240 82.5
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 6.1e-122 441.0 245 80.8
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 7.9e-122 440.7 243 80.2
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.4e-121 439.9 235 83.4
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.8e-121 439.5 236 82.2
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 2.3e-121 439.1 240 81.2
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 8.8e-121 437.2 249 80.3
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 8.8e-121 437.2 238 80.3
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 1.1e-120 436.8 241 82.2
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 1.1e-120 436.8 243 80.2
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.1e-120 436.8 236 81.8
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 2.0e-120 436.0 234 82.5
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 2.6e-120 435.6 243 81.5
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 3.3e-120 435.3 252 79.4
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 3.3e-120 435.3 241 82.2
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 3.3e-120 435.3 241 82.2
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.4e-120 434.9 234 83.8
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 5.7e-120 434.5 242 81.4
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 9.7e-120 433.7 242 81.4
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.3e-119 433.3 242 81.4
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.3e-119 433.3 242 81.4
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.3e-119 433.3 241 81.3
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.3e-119 433.3 249 78.3
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.7e-119 433.0 241 80.9
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.2e-119 432.6 251 78.9
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.8e-119 432.2 245 78.4
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 4.8e-119 431.4 241 81.7
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 4.8e-119 431.4 241 81.7
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.8e-119 431.4 249 77.5
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 6.3e-119 431.0 238 82.4
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 6.3e-119 431.0 243 78.6
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 8.2e-119 430.6 255 78.0
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 8.2e-119 430.6 250 77.2
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 8.2e-119 430.6 245 78.8
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 8.2e-119 430.6 244 78.7
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 8.2e-119 430.6 254 77.6
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.1e-118 430.3 241 80.9
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 1.1e-118 430.3 257 76.3
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 1.4e-118 429.9 239 81.6
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.4e-118 429.9 243 79.4
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 1.4e-118 429.9 245 79.6
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.8e-118 429.5 247 77.7
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 3.1e-118 428.7 241 80.5
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 4.1e-118 428.3 245 78.8
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 5.3e-118 427.9 235 80.0
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 5.3e-118 427.9 244 79.5
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 5.3e-118 427.9 254 75.6
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 9.1e-118 427.2 245 80.0
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 2.6e-117 425.6 235 81.3
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 5.9e-117 424.5 236 80.9
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.0e-116 423.7 231 80.5
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.3e-116 423.3 231 82.3
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.3e-116 423.3 248 76.2
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.9e-116 422.2 242 78.5
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 1.1e-115 420.2 240 78.8
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 3.2e-115 418.7 236 80.9
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 4.2e-115 418.3 232 80.6
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 7.2e-115 417.5 233 79.4
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 9.4e-115 417.2 255 75.3
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 1.6e-114 416.4 242 78.1
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.7e-114 415.6 228 81.6
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 2.7e-114 415.6 245 76.7
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 2.7e-114 415.6 249 75.9
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 6.1e-114 414.5 245 75.9
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 1.4e-113 413.3 245 76.7
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 1.4e-113 413.3 245 75.5
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.3e-113 412.5 248 74.2
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 6.7e-113 411.0 232 79.3
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 6.7e-113 411.0 245 74.7
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 3.3e-112 408.7 246 77.2
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 8.2e-111 404.1 233 76.8
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 8.2e-111 404.1 245 73.9
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 3.1e-110 402.1 245 73.9
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 3.5e-109 398.7 220 82.7
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 2.9e-108 395.6 213 85.9
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.9e-107 392.9 244 72.5
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.2e-106 390.2 247 72.1
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 6.1e-106 387.9 248 71.0
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 5.7e-104 381.3 235 73.6
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 2.4e-102 375.9 253 68.8
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.5e-96 356.7 246 64.2
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 2.6e-96 355.9 252 67.5
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 6.3e-95 351.3 252 62.7
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 1.1e-94 350.5 223 70.0
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 3.5e-93 345.5 227 67.4
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 2.3e-92 342.8 239 62.8
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 5.0e-92 341.7 244 64.8
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.1e-91 340.5 246 63.8
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 7.3e-83 311.2 166 85.5
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.7e-82 308.5 240 62.1
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.1e-78 297.4 161 82.6
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 7.8e-77 291.2 158 81.6
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 9.2e-62 241.1 171 63.7
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 5.4e-54 215.3 218 47.7
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.2e-53 214.2 249 46.2
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 4.2e-46 189.1 209 49.3
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 2.2e-39 166.8 89 85.4
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 4.5e-32 142.5 107 64.5
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 3.2e-30 136.3 116 57.8
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 7.4e-27 125.2 142 50.0
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 3.0e-12 76.6 66 57.6
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 3.3e-11 73.2 50 56.0
Cfa001406 Carpinus fangiana HOM05D000015 ORTHO05D000270 2.5e-06 57.0 32 81.2


User provided reference genes

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