Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 5.3e-262 907.1 453 100.0
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 5.3e-238 827.4 448 91.7
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.9e-235 818.9 457 89.7
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 5.5e-235 817.4 457 89.5
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.8e-233 810.1 474 86.7
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.3e-228 796.2 474 85.4
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 3.1e-222 775.0 448 87.1
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 7.2e-219 763.8 442 84.4
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 3.6e-186 655.2 441 73.0
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 5.2e-185 651.4 440 72.0
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 9.9e-184 647.1 442 71.0
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 8.4e-183 644.0 442 70.8
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 3.2e-182 642.1 442 70.8
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 4.1e-182 641.7 442 72.9
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 5.4e-182 641.3 442 70.6
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 3.9e-180 635.2 439 69.7
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 1.9e-179 632.9 435 72.2
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.2e-178 630.2 435 71.3
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 2.1e-178 629.4 443 67.9
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 3.6e-178 628.6 435 71.0
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 6.2e-178 627.9 441 70.1
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 2.0e-176 622.9 442 69.9
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 1.3e-175 620.2 445 69.0
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 6.4e-175 617.8 438 66.4
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 1.9e-174 616.3 414 72.9
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 7.1e-174 614.4 442 66.7
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 9.3e-174 614.0 438 66.9
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 1.7e-172 609.8 516 60.7
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 2.5e-171 605.9 438 68.3
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 4.8e-170 601.7 486 63.4
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 3.1e-169 599.0 434 68.0
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 6.9e-169 597.8 434 67.1
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 3.4e-168 595.5 436 66.7
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 4.5e-168 595.1 435 66.9
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 4.5e-168 595.1 435 66.9
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 4.5e-168 595.1 556 57.2
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 1.7e-167 593.2 385 73.5
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 2.9e-167 592.4 470 63.8
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 4.9e-167 591.7 437 67.7
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 8.4e-167 590.9 435 68.0
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 1.4e-166 590.1 447 66.4
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 1.9e-166 589.7 434 67.1
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 3.2e-166 589.0 433 65.4
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 5.4e-166 588.2 434 65.2
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 2.1e-165 586.3 434 66.6
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 2.7e-165 585.9 441 66.0
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 5.1e-164 581.6 435 66.9
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 6.7e-164 581.3 435 65.7
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 6.7e-164 581.3 435 65.7
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 1.5e-163 580.1 440 64.8
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 2.5e-163 579.3 437 65.2
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 2.5e-163 579.3 435 64.6
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.6e-162 576.6 434 65.0
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 3.7e-162 575.5 362 76.8
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 4.8e-162 575.1 444 63.7
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 6.2e-162 574.7 435 65.1
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 6.2e-162 574.7 437 63.8
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 1.8e-161 573.2 433 68.1
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 3.1e-161 572.4 456 62.9
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 6.9e-161 571.2 471 58.6
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 1.2e-160 570.5 435 64.8
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 2.6e-160 569.3 448 64.3
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 1.7e-159 566.6 442 65.2
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 2.2e-159 566.2 321 86.3
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 8.4e-159 564.3 387 69.0
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 8.4e-159 564.3 439 64.9
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 4.2e-158 562.0 430 62.3
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 5.5e-158 561.6 382 73.0
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 2.5e-155 552.7 437 64.3
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 9.6e-155 550.8 384 70.8
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 4.8e-154 548.5 471 58.8
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 9.0e-153 544.3 568 51.9
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.0e-151 540.8 387 67.7
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 2.7e-149 532.7 439 58.1
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 6.0e-149 531.6 447 61.1
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 3.9e-148 528.9 370 70.3
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 3.3e-147 525.8 471 58.2
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 2.0e-144 516.5 439 58.5
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 9.4e-142 507.7 412 63.6
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 3.0e-140 502.7 437 58.1
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 6.5e-135 485.0 321 72.9
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 8.5e-135 484.6 433 54.0
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 3.6e-133 479.2 464 56.9
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 7.4e-131 471.5 408 59.6
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 7.4e-123 444.9 324 68.8
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 5.9e-120 435.3 431 53.4
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.3e-119 434.1 383 56.7
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.9e-118 430.3 286 71.0
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 3.0e-116 422.9 430 50.0
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 5.7e-115 418.7 427 50.8
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 1.6e-112 410.6 423 49.6
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.2e-109 401.0 288 66.3
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 1.1e-105 387.9 296 67.9
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 3.5e-104 382.9 251 74.5
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 1.0e-103 381.3 435 46.0
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 1.8e-100 370.5 315 58.4
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 3.3e-86 323.2 352 47.2
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 9.5e-86 321.6 288 56.2
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.0e-63 248.4 284 48.9
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 1.9e-62 244.2 189 66.7
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 7.3e-62 242.3 194 61.3
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 1.6e-53 214.5 152 71.7
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 9.0e-52 208.8 154 66.9
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.2e-51 208.4 331 38.1
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 2.6e-51 207.2 305 39.7
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 8.7e-47 192.2 146 68.5
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.6e-45 188.0 200 49.0
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 2.1e-45 187.6 129 70.5
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 3.1e-44 183.7 131 67.2
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 7.1e-41 172.6 147 59.9
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 3.5e-40 170.2 126 67.5
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 6.5e-34 149.4 92 71.7
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 5.1e-31 139.8 93 71.0
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 9.7e-30 135.6 98 66.3
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 6.3e-29 132.9 96 58.3
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 9.0e-28 129.0 365 28.5
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 3.4e-19 100.5 156 34.6
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 3.5e-11 73.9 63 49.2
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 5.9e-11 73.2 55 60.0
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 3.8e-10 70.5 69 53.6
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.5e-09 67.8 68 51.5
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 5.5e-09 66.6 69 52.2
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 5.5e-09 66.6 69 52.2
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 7.2e-09 66.2 49 61.2
BraA03t09516Z Brassica rapa HOM05D001312 ORTHO05D008018 3.3e-06 57.4 58 51.7


User provided reference genes

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