Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 2.9e-97 360.1 551 100.0
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.4e-59 233.0 551 76.4
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 6.6e-57 226.1 551 77.0
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.6e-57 225.7 551 76.2
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.5e-56 224.2 557 72.9
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.7e-55 219.9 551 68.1
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 9.9e-53 212.2 551 72.8
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 2.3e-49 201.1 551 78.2
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 1.4e-22 112.1 113 57.5
FAN11G0041 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.0e-20 105.9 59 89.8
FAN21G0234 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.0e-20 105.9 59 89.8
FAN10G0942 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.9e-20 103.6 59 86.4
FAN27G2855 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.2e-19 100.5 59 84.7
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 6.0e-18 96.7 90 57.8
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 1.3e-17 95.5 89 57.3
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 2.5e-16 91.3 89 53.9
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 9.7e-16 89.4 86 55.8
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 9.7e-16 89.4 90 55.6
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 1.4e-14 85.5 126 44.4
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 2.4e-14 84.7 87 51.7
FAN03G0002 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.1e-14 84.3 41 97.6
FAN11G0239 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.1e-14 84.3 41 97.6
FAN13G1461 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.1e-14 84.3 41 97.6
FAN25G0700 Fragaria x ananassa HOM05D000681 ORTHO05D012645 1.2e-13 82.4 54 79.6
FAN21G1428 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-13 82.0 41 95.1
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 2.6e-13 81.3 117 47.0
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 3.4e-13 80.9 143 39.9
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 4.5e-13 80.5 84 53.6
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 1.7e-12 78.6 132 42.4
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 6.5e-12 76.6 130 42.3
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.1e-11 75.9 78 51.3
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 1.4e-11 75.5 138 38.4
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 2.5e-11 74.7 136 42.6
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 4.2e-11 73.9 136 38.2
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 7.2e-11 73.2 154 40.9
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 1.2e-10 72.4 99 45.5
C04p11500 Brassica napus HOM05D006485 ORTHO05D006108 2.7e-10 71.2 79 49.4
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 3.6e-10 70.9 99 48.5
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 4.6e-10 70.5 109 40.4
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 1.0e-09 69.3 108 40.7
Ah.15g091240 Amaranthus hybridus HOM05D011389 ORTHO05D006108 1.4e-09 68.9 149 38.3
Lj3C1005T3 Lonicera japonica HOM05D011389 ORTHO05D006108 1.8e-09 68.6 142 40.1
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 3.0e-09 67.8 92 45.7
FAN22G1073 Fragaria x ananassa HOM05D000681 ORTHO05D012645 3.0e-09 67.8 38 86.8
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 3.0e-09 67.8 162 35.8
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 3.0e-09 67.8 80 53.8
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 6.7e-09 66.6 89 46.1
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 6.7e-09 66.6 161 35.4
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 8.8e-09 66.2 105 41.0
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 1.1e-08 65.9 79 51.9
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 1.1e-08 65.9 79 51.9
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 2.0e-08 65.1 146 32.9
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 2.5e-08 64.7 70 50.0
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 2.5e-08 64.7 79 51.9
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 2.5e-08 64.7 70 50.0
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 3.3e-08 64.3 79 51.9
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 3.3e-08 64.3 124 37.1
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 3.3e-08 64.3 82 53.7
FAN06G1871 Fragaria x ananassa HOM05D000681 ORTHO05D003965 3.3e-08 64.3 36 86.1
FAN06G3135 Fragaria x ananassa HOM05D000681 ORTHO05D011778 3.3e-08 64.3 36 86.1
FAN06G3376 Fragaria x ananassa HOM05D000681 ORTHO05D012645 3.3e-08 64.3 36 86.1
FAN15G1461 Fragaria x ananassa HOM05D000681 ORTHO05D006108 3.3e-08 64.3 36 86.1
FAN22G1082 Fragaria x ananassa HOM05D000681 ORTHO05D011778 3.3e-08 64.3 36 86.1
FAN24G0338 Fragaria x ananassa HOM05D000681 ORTHO05D011778 3.3e-08 64.3 36 86.1
FAN28G1994 Fragaria x ananassa HOM05D000681 ORTHO05D006108 3.3e-08 64.3 36 86.1
EL10Ac7g16753 Beta vulgaris HOM05D006485 ORTHO05D006108 5.7e-08 63.5 118 37.3
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 5.7e-08 63.5 81 51.9
FAN25G1048 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.7e-08 63.5 36 86.1
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 7.4e-08 63.2 84 50.0
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 9.7e-08 62.8 79 50.6
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 9.7e-08 62.8 77 49.4
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 9.7e-08 62.8 77 49.4
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.7e-07 62.0 89 46.1
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 2.2e-07 61.6 77 49.4
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 2.2e-07 61.6 89 42.7
Rhsim04G0137200 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.7e-07 60.8 87 43.7
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 4.8e-07 60.5 79 49.4
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 6.3e-07 60.1 91 42.9
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 6.3e-07 60.1 79 51.9
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 8.2e-07 59.7 128 35.9
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 8.2e-07 59.7 128 36.7
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 8.2e-07 59.7 77 46.8
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 1.1e-06 59.3 112 39.3
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 1.1e-06 59.3 112 39.3
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 1.1e-06 59.3 81 49.4
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 1.1e-06 59.3 71 52.1
CANSAT80G1413 Cannabis sativa HOM05D006485 ORTHO05D006108 1.8e-06 58.5 85 40.0
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 1.8e-06 58.5 63 47.6
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 2.4e-06 58.2 95 44.2
Actinidia32467 Actinidia chinensis HOM05D011389 ORTHO05D006108 3.1e-06 57.8 110 39.1
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 3.1e-06 57.8 112 41.1
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 3.1e-06 57.8 112 38.4
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 3.1e-06 57.8 112 41.1
Aqoxy1G01006 Aquilegia oxysepala HOM05D006485 ORTHO05D006108 5.3e-06 57.0 114 35.1
CSS0004621 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 6.9e-06 56.6 81 43.2
Nn2g13931 Nelumbo nucifera HOM05D006485 ORTHO05D006108 6.9e-06 56.6 114 39.5
vmacro08809 Vaccinium macrocarpon HOM05D011389 ORTHO05D006108 9.1e-06 56.2 75 48.0


User provided reference genes

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