Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0470741 Rosa chinensis HOM05D005003 ORTHO05D006220 1.6e-126 456.1 227 100.0
FAN18G2350 Fragaria x ananassa HOM05D005003 ORTHO05D006220 2.4e-101 372.5 226 84.1
FAN08G0347 Fragaria x ananassa HOM05D005003 ORTHO05D006220 3.1e-101 372.1 226 84.1
FAN04G0108 Fragaria x ananassa HOM05D005003 ORTHO05D006220 9.9e-100 367.1 226 82.7
RcHm_v2.0_Chr7g0238981 Rosa chinensis HOM05D005003 ORTHO05D006220 6.4e-99 364.4 226 85.4
FAN13G0908 Fragaria x ananassa HOM05D005003 ORTHO05D006220 1.6e-97 359.8 226 80.5
FvH4_5g37331 Fragaria vesca HOM05D005003 ORTHO05D006220 2.7e-97 359.0 226 82.7
RcHm_v2.0_Chr4g0408951 Rosa chinensis HOM05D005003 ORTHO05D006220 6.4e-91 337.8 226 79.2
MD08G1182800 Malus domestica HOM05D005003 ORTHO05D006220 1.4e-85 320.1 228 73.7
Prupe.1G517000 Prunus persica HOM05D005003 ORTHO05D006220 4.5e-84 315.1 228 74.6
QL12p036782 Quercus lobata HOM05D005003 ORTHO05D006220 3.2e-74 282.3 219 67.1
Atru.chr13.1187 Acer truncatum HOM05D005003 ORTHO05D006220 8.7e-72 274.2 228 63.6
Ciclev10003185m.g Citrus clementina HOM05D005003 ORTHO05D006220 8.7e-72 274.2 223 65.5
Cfa013635 Carpinus fangiana HOM05D005003 ORTHO05D006220 1.4e-69 266.9 221 64.7
PGR044G0640 Punica granatum HOM05D005003 ORTHO05D006220 1.5e-68 263.5 219 65.3
CANSAT25G3351 Cannabis sativa HOM05D005003 ORTHO05D006220 4.5e-68 261.9 180 75.0
CiPaw.07G180100 Carya illinoinensis HOM05D005003 ORTHO05D006220 7.6e-68 261.2 229 62.0
Eucgr.B00022 Eucalyptus grandis HOM05D005003 ORTHO05D006220 1.4e-66 256.9 224 63.4
Potri.002G096500 Populus trichocarpa HOM05D005003 ORTHO05D006220 1.6e-65 253.4 230 62.6
Dinv44775 Davidia involucrata HOM05D005003 ORTHO05D006220 2.7e-65 252.7 219 60.7
Thecc.08G106800 Theobroma cacao HOM05D005003 ORTHO05D006220 3.5e-65 252.3 227 60.8
Cpa.g.sc36.131 Carica papaya HOM05D005003 ORTHO05D006220 4.6e-65 251.9 240 59.6
Rhsim06G0082100 Rhododendron simsii HOM05D005003 ORTHO05D006220 1.8e-64 250.0 232 59.1
Gohir.D02G083500 Gossypium hirsutum HOM05D005003 ORTHO05D006220 2.3e-64 249.6 240 58.3
TWI56G0498 Tripterygium wilfordii HOM05D005003 ORTHO05D006220 5.1e-64 248.4 233 61.4
THA.LOC104816746 Tarenaya hassleriana HOM05D005003 ORTHO05D006220 1.1e-63 247.3 225 60.4
Gorai.005G094100 Gossypium raimondii HOM05D005003 ORTHO05D006220 1.9e-63 246.5 226 59.3
Lj4A723T22 Lonicera japonica HOM05D005003 ORTHO05D006220 3.3e-63 245.7 235 57.9
vmacro21269 Vaccinium macrocarpon HOM05D005003 ORTHO05D006220 4.3e-63 245.4 235 57.4
Nn5g30108 Nelumbo nucifera HOM05D005003 ORTHO05D006220 5.7e-63 245.0 221 62.4
GSVIVG01009030001 Vitis vinifera HOM05D005003 ORTHO05D006220 5.7e-63 245.0 234 59.8
TAR625G1506 Trochodendron aralioides HOM05D005003 ORTHO05D006220 7.4e-63 244.6 223 60.1
Hma1.2p1_0575F.1_g181570 Hydrangea macrophylla HOM05D005003 ORTHO05D006220 9.7e-63 244.2 218 59.2
Peaxi162Scf00041g01737 Petunia axillaris HOM05D005003 ORTHO05D006220 9.7e-63 244.2 220 61.4
AUR62027758 Chenopodium quinoa HOM05D005003 ORTHO05D006220 1.6e-62 243.4 226 58.0
Nn1g05355 Nelumbo nucifera HOM05D005003 ORTHO05D006220 1.6e-62 243.4 237 57.8
Duzib116G0723 Durio zibethinus HOM05D005003 ORTHO05D006220 2.2e-62 243.0 227 60.8
BcaB03g13676 Brassica carinata HOM05D005003 ORTHO05D006220 2.8e-62 242.7 222 60.8
Sed0012063 Sechium edule HOM05D005003 ORTHO05D006220 4.8e-62 241.9 228 58.8
Gohir.D05G229066 Gossypium hirsutum HOM05D005003 ORTHO05D006220 8.2e-62 241.1 225 56.9
Gorai.009G237000 Gossypium raimondii HOM05D005003 ORTHO05D006220 8.2e-62 241.1 225 56.9
Lalb_Chr08g0232881 Lupinus albus HOM05D005003 ORTHO05D006220 8.2e-62 241.1 190 64.2
Sabra02G0076000 Salix brachista HOM05D005003 ORTHO05D006220 1.1e-61 240.7 230 61.3
Sp1g29750 Schrenkiella parvula HOM05D005003 ORTHO05D006220 1.1e-61 240.7 224 58.5
Sc01g0000450 Simmondsia chinensis HOM05D005003 ORTHO05D006220 1.1e-61 240.7 217 58.1
CSS0024644 Camellia sinensis var. sinensis HOM05D005003 ORTHO05D006220 1.4e-61 240.4 229 56.8
Nitab4.5_0005777g0050 Nicotiana tabacum HOM05D005003 ORTHO05D006220 1.8e-61 240.0 200 64.5
Solyc04g074140.4 Solanum lycopersicum HOM05D005003 ORTHO05D006220 2.4e-61 239.6 222 60.4
Sopen04g029320 Solanum pennellii HOM05D005003 ORTHO05D006220 2.4e-61 239.6 222 60.4
Manes.02G152700 Manihot esculenta HOM05D005003 ORTHO05D006220 3.1e-61 239.2 222 60.8
C06p11460 Brassica napus HOM05D005003 ORTHO05D006220 4.1e-61 238.8 229 57.2
AL1G49100 Arabidopsis lyrata HOM05D005003 ORTHO05D006220 6.9e-61 238.0 219 60.7
BcaC08g43771 Brassica carinata HOM05D005003 ORTHO05D006220 1.2e-60 237.3 224 58.0
Carub.0001s3263 Capsella rubella HOM05D005003 ORTHO05D006220 1.2e-60 237.3 228 57.5
PGSC0003DMG400006406 Solanum tuberosum HOM05D005003 ORTHO05D006220 1.2e-60 237.3 222 59.5
BcaC05g27758 Brassica carinata HOM05D005003 ORTHO05D006220 1.5e-60 236.9 222 59.5
C05p37520 Brassica napus HOM05D005003 ORTHO05D006220 1.5e-60 236.9 222 59.5
AT1G34630 Arabidopsis thaliana HOM05D005003 ORTHO05D006220 2.6e-60 236.1 227 58.1
PSO210G4886 Papaver somniferum HOM05D005003 ORTHO05D006220 3.4e-60 235.7 199 61.8
ClCG08G011090 Citrullus lanatus HOM05D005003 ORTHO05D006220 4.5e-60 235.3 232 56.9
Migut.C00095 Erythranthe guttata HOM05D005003 ORTHO05D006220 4.5e-60 235.3 191 64.9
CAN.G101.26 Capsicum annuum HOM05D005003 ORTHO05D006220 5.9e-60 235.0 225 58.7
BcaB07g33109 Brassica carinata HOM05D005003 ORTHO05D006220 7.7e-60 234.6 221 59.3
Thhalv10001817m.g Eutrema salsugineum HOM05D005003 ORTHO05D006220 7.7e-60 234.6 221 60.2
CARHR033930 Cardamine hirsuta HOM05D005003 ORTHO05D006220 1.0e-59 234.2 221 57.0
Manes.18G067500 Manihot esculenta HOM05D005003 ORTHO05D006220 1.3e-59 233.8 224 58.9
PSO447G0231 Papaver somniferum HOM05D005003 ORTHO05D006220 1.3e-59 233.8 199 61.3
A09p32030 Brassica napus HOM05D005003 ORTHO05D006220 1.7e-59 233.4 225 56.0
BraA09t38740Z Brassica rapa HOM05D005003 ORTHO05D006220 2.2e-59 233.0 225 56.0
Aqoxy6G00783 Aquilegia oxysepala HOM05D005003 ORTHO05D006220 3.8e-59 232.3 232 56.5
Gohir.D06G036300 Gossypium hirsutum HOM05D005003 ORTHO05D006220 3.8e-59 232.3 230 58.7
AUR62038523 Chenopodium quinoa HOM05D005003 ORTHO05D006220 6.5e-59 231.5 223 56.5
Gorai.010G040300 Gossypium raimondii HOM05D005003 ORTHO05D006220 6.5e-59 231.5 230 58.3
Hund26962 Selenicereus undatus HOM05D005003 ORTHO05D006220 6.5e-59 231.5 199 62.8
HanXRQChr11g0327771 Helianthus annuus HOM05D005003 ORTHO05D006220 1.1e-58 230.7 216 56.5
Lalb_Chr11g0073941 Lupinus albus HOM05D005003 ORTHO05D006220 1.1e-58 230.7 215 58.1
EL10Ac1g01213 Beta vulgaris HOM05D005003 ORTHO05D006220 1.4e-58 230.3 228 52.2
A05p23910 Brassica napus HOM05D005003 ORTHO05D006220 2.5e-58 229.6 222 59.0
Gohir.A06G035800 Gossypium hirsutum HOM05D005003 ORTHO05D006220 3.2e-58 229.2 230 58.3
Oeu046301.1 Olea europaea HOM05D005003 ORTHO05D006220 4.2e-58 228.8 220 57.7
Dinv14326 Davidia involucrata HOM05D005003 ORTHO05D006220 5.5e-58 228.4 219 56.2
MSTRG.24973 Avicennia marina HOM05D005003 ORTHO05D006220 9.4e-58 227.6 182 65.4
BolC6t36281H Brassica oleracea HOM05D005003 ORTHO05D006220 9.4e-58 227.6 228 55.7
Gohir.A05G226300 Gossypium hirsutum HOM05D005003 ORTHO05D006220 1.2e-57 227.3 225 54.7
MELO3C011025.2 Cucumis melo HOM05D005003 ORTHO05D006220 1.6e-57 226.9 226 56.6
ECA246G4896 Erigeron canadensis HOM05D005003 ORTHO05D006220 2.7e-57 226.1 224 56.2
Lj6g0010535 Lotus japonicus HOM05D005003 ORTHO05D006220 3.6e-57 225.7 169 68.0
Ca_02288_v3 Cicer arietinum L. HOM05D005003 ORTHO05D006220 6.1e-57 224.9 178 65.7
CsaV3_2G029670 Cucumis sativus L. HOM05D005003 ORTHO05D006220 6.1e-57 224.9 226 56.2
Os03g0190900 Oryza sativa ssp. japonica HOM05D005003 ORTHO05D006220 1.4e-56 223.8 182 64.3
TPR.G20790 Trifolium pratense HOM05D005003 ORTHO05D006220 1.4e-56 223.8 167 68.9
Psat1g137840 Pisum sativum HOM05D005003 ORTHO05D006220 3.0e-56 222.6 191 61.3
MBI02_g35765_MAGBIO Magnolia biondii HOM05D005003 ORTHO05D006220 6.7e-56 221.5 274 50.0
Zm00001eb006880 Zea mays HOM05D005003 ORTHO05D006220 3.3e-55 219.2 196 59.7
HPP92_027712 Vanilla planifolia HOM05D005003 ORTHO05D006220 7.4e-55 218.0 184 61.4
Glyma.15G183500 Glycine max HOM05D005003 ORTHO05D006220 9.7e-55 217.6 215 55.8
BolC5t32493H Brassica oleracea HOM05D005003 ORTHO05D006220 2.8e-54 216.1 222 55.9
CDE03G0282 Ceratophyllum demersum HOM05D005003 ORTHO05D006220 1.4e-53 213.8 186 63.4
BraA05t21269Z Brassica rapa HOM05D005003 ORTHO05D006220 5.9e-52 208.4 222 55.0
Lsat_1_v5_gn_6_103020 Lactuca sativa HOM05D005003 ORTHO05D006220 1.0e-51 207.6 230 51.7
Phvul.009G222900 Phaseolus vulgaris HOM05D005003 ORTHO05D006220 1.0e-51 207.6 219 53.9
Mapoly0082s0089 Marchantia polymorpha HOM05D005003 ORTHO05D006220 6.5e-51 204.9 194 55.7
Pp3c21_12240 Physcomitrium patens HOM05D005003 ORTHO05D006220 3.2e-50 202.6 169 58.0
COL.COLO4_16399 Corchorus olitorius HOM05D005003 ORTHO05D006220 3.6e-49 199.1 226 53.1
Aa31LG6G8500 Aethionema arabicum HOM05D005003 ORTHO05D006220 4.7e-49 198.7 223 50.2
SGA_v2.0_scaffold729G53525 Striga asiatica HOM05D005003 ORTHO05D006220 6.1e-49 198.4 192 58.3
Actinidia10323 Actinidia chinensis HOM05D005003 ORTHO05D006220 5.7e-47 191.8 124 75.0
VMungo1309G2656 Vigna mungo HOM05D005003 ORTHO05D006220 2.8e-46 189.5 186 54.8
unitig_37.g12957 Utricularia gibba HOM05D005003 ORTHO05D006220 4.8e-46 188.7 190 54.7
Nitab4.5_0000232g0240 Nicotiana tabacum HOM05D005003 ORTHO05D006220 1.1e-45 187.6 122 75.4
SEGI_39253 Sequoiadendron giganteum HOM05D005003 ORTHO05D006220 1.8e-45 186.8 165 61.2
SMO367G0178 Selaginella moellendorffii HOM05D005003 ORTHO05D006220 4.1e-45 185.7 167 56.9
unitig_37.g12958 Utricularia gibba HOM05D005003 ORTHO05D006220 4.1e-45 185.7 207 50.2
Gohir.A02G076300 Gossypium hirsutum HOM05D005003 ORTHO05D006220 1.0e-43 181.0 112 75.9
ATR0782G104 Amborella trichopoda HOM05D005003 ORTHO05D006220 2.9e-43 179.5 174 56.9
Ah.05g169960 Amaranthus hybridus HOM05D005003 ORTHO05D006220 3.8e-43 179.1 191 52.4
AagrBONN_evm.TU.Sc2ySwM_368.3429 Anthoceros agrestis HOM05D005003 ORTHO05D006220 9.7e-39 164.5 173 50.3
Haze_22267 Corylus avellana HOM05D005003 ORTHO05D006220 3.6e-33 146.0 143 58.7
Oeu012928.1 Olea europaea HOM05D005003 ORTHO05D006220 2.0e-31 140.2 205 45.4
Cc10_g07200 Coffea canephora HOM05D005003 ORTHO05D006220 9.8e-31 137.9 81 77.8
Medtr2g044600 Medicago truncatula HOM05D005003 ORTHO05D006220 1.2e-28 131.0 75 78.7
MBI05_g19344_MAGBIO Magnolia biondii HOM05D005003 ORTHO05D006220 5.0e-27 125.6 149 51.7
MD15G1368900 Malus domestica HOM05D005003 ORTHO05D006220 2.3e-24 116.7 103 65.0
arahy.Tifrunner.gnm1.ann1.T3BG7X Arachis hypogaea HOM05D005003 ORTHO05D006220 2.0e-23 113.6 176 43.8
arahy.Tifrunner.gnm1.ann1.DW6FDI Arachis hypogaea HOM05D005003 ORTHO05D006220 2.6e-23 113.2 176 43.8
Cc10_g07210 Coffea canephora HOM05D005003 ORTHO05D006220 2.6e-23 113.2 141 46.8
DCAR_008734 Daucus carota HOM05D005003 ORTHO05D006220 5.4e-21 105.5 139 43.9
DCAR_008735 Daucus carota HOM05D005003 ORTHO05D006220 9.1e-21 104.8 60 78.3
PRCOL_00001303 Prasinoderma coloniale HOM05D005003 ORTHO05D006220 2.5e-18 96.7 187 34.2
Hund16905 Selenicereus undatus HOM05D005003 ORTHO05D006220 1.0e-16 91.3 145 41.4
Ca_04506_v3 Cicer arietinum L. HOM05D000032 ORTHO05D009383 2.6e-15 86.7 59 69.5
Lj4A102G54 Lonicera japonica HOM05D005003 ORTHO05D006220 5.7e-15 85.5 115 45.2
MCO11G769 Micromonas commoda HOM05D005003 ORTHO05D006220 2.2e-14 83.6 185 34.1
Cre08.g379300 Chlamydomonas reinhardtii HOM05D005003 ORTHO05D006220 2.7e-12 76.6 168 31.5
PRCOL_00001883 Prasinoderma coloniale HOM05D005003 ORTHO05D006220 2.7e-12 76.6 170 31.8
MD15G1369000 Malus domestica HOM05D005003 ORTHO05D006220 2.5e-10 70.1 42 73.8
SalBow7G4179 Salvia bowleyana HOM05D005003 ORTHO05D006220 4.7e-09 65.9 81 46.9
ECA232G1818 Erigeron canadensis HOM05D005003 ORTHO05D006220 5.8e-07 58.9 74 43.2


User provided reference genes

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