Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0470251 Rosa chinensis HOM05D006702 ORTHO05D008540 5.5e-101 370.9 183 100.0
FvH4_6g16390 Fragaria vesca HOM05D006702 ORTHO05D008540 2.5e-77 292.4 177 85.9
FAN14G1896 Fragaria x ananassa HOM05D006702 ORTHO05D008540 2.5e-77 292.4 177 85.9
FAN05G3937 Fragaria x ananassa HOM05D006702 ORTHO05D008540 9.5e-77 290.4 177 85.3
Prupe.6G232200 Prunus persica HOM05D006702 ORTHO05D008540 6.2e-60 234.6 195 69.7
CiPaw.10G130200 Carya illinoinensis HOM05D006702 ORTHO05D008540 4.6e-55 218.4 162 70.4
Haze_20544 Corylus avellana HOM05D006702 ORTHO05D008540 9.5e-53 210.7 182 65.4
CiPaw.10G130000 Carya illinoinensis HOM05D006702 ORTHO05D008540 8.1e-52 207.6 162 67.3
CANSAT80G0135 Cannabis sativa HOM05D006702 ORTHO05D008540 5.2e-51 204.9 183 66.1
Haze_20547 Corylus avellana HOM05D006702 ORTHO05D008540 5.2e-51 204.9 183 63.4
MD04G1093600 Malus domestica HOM05D006702 ORTHO05D008540 3.4e-50 202.2 173 67.1
QL07p043331 Quercus lobata HOM05D006702 ORTHO05D008540 4.4e-50 201.8 187 64.7
QL07p043496 Quercus lobata HOM05D006702 ORTHO05D008540 2.9e-49 199.1 187 64.2
CSS0007009 Camellia sinensis var. sinensis HOM05D006702 ORTHO05D008540 5.6e-45 184.9 150 65.3
TWI77G0937 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 5.6e-45 184.9 155 65.2
MELO3C024465.2 Cucumis melo HOM05D006702 ORTHO05D008540 6.2e-44 181.4 183 59.6
Manes.09G067614 Manihot esculenta HOM05D006702 ORTHO05D008540 1.1e-43 180.6 170 60.6
ClCG04G009300 Citrullus lanatus HOM05D006702 ORTHO05D008540 1.4e-43 180.3 181 59.1
Thecc.05G066700 Theobroma cacao HOM05D006702 ORTHO05D008540 1.8e-43 179.9 129 75.2
Gohir.A04G072000 Gossypium hirsutum HOM05D006702 ORTHO05D008540 2.4e-43 179.5 147 69.4
Potri.016G093000 Populus trichocarpa HOM05D006702 ORTHO05D008540 4.0e-43 178.7 152 64.5
Duzib106G0264 Durio zibethinus HOM05D006702 ORTHO05D008540 9.0e-43 177.6 153 67.3
Actinidia32493 Actinidia chinensis HOM05D006702 ORTHO05D008540 4.4e-42 175.3 175 58.3
CsaV3_6G039890 Cucumis sativus L. HOM05D006702 ORTHO05D008540 5.8e-42 174.9 183 57.9
FAN02G1423 Fragaria x ananassa HOM05D006702 ORTHO05D008540 7.6e-42 174.5 117 78.6
FAN05G1090 Fragaria x ananassa HOM05D006702 ORTHO05D008540 7.6e-42 174.5 117 78.6
Gorai.009G414600 Gossypium raimondii HOM05D006702 ORTHO05D008540 7.6e-42 174.5 155 65.8
Gorai.006G163300 Gossypium raimondii HOM05D006702 ORTHO05D008540 3.8e-41 172.2 173 59.0
GSVIVG01025733001 Vitis vinifera HOM05D006702 ORTHO05D008540 8.4e-41 171.0 106 76.4
Gohir.D09G142300 Gossypium hirsutum HOM05D006702 ORTHO05D008540 1.1e-40 170.6 173 58.4
Oeu045060.1 Olea europaea HOM05D006702 ORTHO05D008540 1.1e-40 170.6 173 55.5
Gohir.D04G110501 Gossypium hirsutum HOM05D006702 ORTHO05D008540 3.2e-40 169.1 94 85.1
Nitab4.5_0000578g0200 Nicotiana tabacum HOM05D006702 ORTHO05D008540 3.2e-40 169.1 136 64.0
Nitab4.5_0008928g0010 Nicotiana tabacum HOM05D006702 ORTHO05D008540 3.2e-40 169.1 136 64.0
Atru.chr8.1809 Acer truncatum HOM05D006702 ORTHO05D008540 7.1e-40 167.9 143 65.7
Gohir.A09G146600 Gossypium hirsutum HOM05D006702 ORTHO05D008540 7.1e-40 167.9 136 69.1
TWI53G0904 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 9.3e-40 167.5 106 74.5
Phvul.007G219250 Phaseolus vulgaris HOM05D006702 ORTHO05D008540 2.1e-39 166.4 133 68.4
Lj5g0016847 Lotus japonicus HOM05D006702 ORTHO05D008540 3.5e-39 165.6 174 53.4
VMungo0720G0934 Vigna mungo HOM05D006702 ORTHO05D008540 1.0e-38 164.1 106 77.4
Cc06_g04220 Coffea canephora HOM05D006702 ORTHO05D008540 1.7e-38 163.3 142 60.6
AL6G12700 Arabidopsis lyrata HOM05D006702 ORTHO05D008540 2.3e-38 162.9 182 56.0
Lalb_Chr06g0171741 Lupinus albus HOM05D006702 ORTHO05D008540 2.3e-38 162.9 148 64.2
Ciclev10012549m.g Citrus clementina HOM05D006702 ORTHO05D008540 3.0e-38 162.5 145 64.8
Eucgr.K02933 Eucalyptus grandis HOM05D006702 ORTHO05D008540 3.9e-38 162.2 97 79.4
Duzib128G1950 Durio zibethinus HOM05D006702 ORTHO05D008540 5.1e-38 161.8 90 84.4
Glyma.13G142500 Glycine max HOM05D006702 ORTHO05D008540 8.7e-38 161.0 118 72.9
C03p01460 Brassica napus HOM05D006702 ORTHO05D008540 1.1e-37 160.6 186 54.3
AT5G03370 Arabidopsis thaliana HOM05D006702 ORTHO05D008540 1.9e-37 159.8 182 54.4
EL10Ac7g16628 Beta vulgaris HOM05D006702 ORTHO05D008540 1.9e-37 159.8 95 81.1
THA.LOC104823233 Tarenaya hassleriana HOM05D006702 ORTHO05D008540 2.5e-37 159.5 191 57.1
Carub.0006s0219 Capsella rubella HOM05D006702 ORTHO05D008540 3.3e-37 159.1 178 58.4
BcaB01g05844 Brassica carinata HOM05D006702 ORTHO05D008540 7.3e-37 157.9 186 53.2
Aa31LG1G21770 Aethionema arabicum HOM05D006702 ORTHO05D008540 9.6e-37 157.5 123 68.3
BolC3t12702H Brassica oleracea HOM05D006702 ORTHO05D008540 1.3e-36 157.1 185 52.4
Cpa.g.sc54.80 Carica papaya HOM05D006702 ORTHO05D008540 2.1e-36 156.4 188 51.6
CiPaw.09G172500 Carya illinoinensis HOM05D006702 ORTHO05D008540 2.1e-36 156.4 108 71.3
Sp6g39370 Schrenkiella parvula HOM05D006702 ORTHO05D008540 2.1e-36 156.4 143 60.8
MSTRG.10321 Avicennia marina HOM05D006702 ORTHO05D008540 2.8e-36 156.0 139 61.2
PGR142G4417 Punica granatum HOM05D006702 ORTHO05D008540 3.6e-36 155.6 178 53.9
Sabra16G0098200 Salix brachista HOM05D006702 ORTHO05D008540 3.6e-36 155.6 99 76.8
PGSC0003DMG400003886 Solanum tuberosum HOM05D006702 ORTHO05D008540 3.6e-36 155.6 125 64.8
ECA233G1636 Erigeron canadensis HOM05D006702 ORTHO05D008540 8.1e-36 154.5 107 68.2
Lj2P122T8 Lonicera japonica HOM05D006702 ORTHO05D008540 1.1e-35 154.1 89 82.0
TPR.G11275 Trifolium pratense HOM05D006702 ORTHO05D008540 1.4e-35 153.7 102 74.5
BraA03t09496Z Brassica rapa HOM05D006702 ORTHO05D008540 1.8e-35 153.3 143 56.6
Sopen09g002990 Solanum pennellii HOM05D006702 ORTHO05D008540 1.8e-35 153.3 123 64.2
AUR62040349 Chenopodium quinoa HOM05D006702 ORTHO05D008540 3.1e-35 152.5 120 65.8
Migut.L01703 Erythranthe guttata HOM05D006702 ORTHO05D008540 4.0e-35 152.1 138 61.6
Medtr1g063240 Medicago truncatula HOM05D006702 ORTHO05D008540 4.0e-35 152.1 102 73.5
Sed0024166 Sechium edule HOM05D006702 ORTHO05D008540 4.0e-35 152.1 145 58.6
SGA_v2.0_scaffold224G42945 Striga asiatica HOM05D006702 ORTHO05D008540 4.0e-35 152.1 155 56.8
Psat6g074160 Pisum sativum HOM05D006702 ORTHO05D008540 6.9e-35 151.4 122 65.6
CAN.G900.34 Capsicum annuum HOM05D006702 ORTHO05D008540 9.0e-35 151.0 138 58.7
Solyc09g008190.3 Solanum lycopersicum HOM05D006702 ORTHO05D008540 9.0e-35 151.0 123 63.4
A03p01140 Brassica napus HOM05D000070 ORTHO05D001255 1.2e-34 150.6 120 62.5
Thhalv10003274m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 1.5e-34 150.2 147 59.2
Sc02g0001610 Simmondsia chinensis HOM05D006702 ORTHO05D008540 2.6e-34 149.4 150 58.0
Nn2g13794 Nelumbo nucifera HOM05D006702 ORTHO05D008540 4.5e-34 148.7 187 50.8
Nn2g13797 Nelumbo nucifera HOM05D006702 ORTHO05D008540 4.5e-34 148.7 187 50.8
CARHR209960 Cardamine hirsuta HOM05D006702 ORTHO05D008540 5.8e-34 148.3 178 53.4
Thhalv10014711m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 2.9e-33 146.0 99 71.7
PSO339G3061 Papaver somniferum HOM05D006702 ORTHO05D008540 6.4e-33 144.8 105 66.7
AUR62042500 Chenopodium quinoa HOM05D006702 ORTHO05D008540 8.4e-33 144.4 89 76.4
Thhalv10029095m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 8.4e-33 144.4 89 75.3
Ca_11502_v3 Cicer arietinum L. HOM05D006702 ORTHO05D008540 4.2e-32 142.1 118 63.6
TAR369G0293 Trochodendron aralioides HOM05D006702 ORTHO05D008540 4.2e-32 142.1 89 74.2
ATR0171G014 Amborella trichopoda HOM05D006702 ORTHO05D008540 9.3e-32 141.0 91 71.4
DCAR_020817 Daucus carota HOM05D006702 ORTHO05D008540 4.6e-31 138.7 99 66.7
Aqoxy2G01772 Aquilegia oxysepala HOM05D006702 ORTHO05D008540 1.0e-30 137.5 94 72.3
Hma1.2p1_0205F.1_g087030 Hydrangea macrophylla HOM05D006702 ORTHO05D008540 1.5e-29 133.7 155 52.3
Hund25533 Selenicereus undatus HOM05D006702 ORTHO05D008540 1.9e-29 133.3 120 60.8
Lsat_1_v5_gn_6_25081 Lactuca sativa HOM05D006702 ORTHO05D008540 2.5e-29 132.9 128 52.3
Lalb_Chr24g0398871 Lupinus albus HOM05D006702 ORTHO05D008540 2.5e-29 132.9 104 61.5
CDE05G1201 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 7.4e-29 131.3 99 63.6
SEGI_37807 Sequoiadendron giganteum HOM05D006702 ORTHO05D008540 1.3e-28 130.6 113 55.8
arahy.Tifrunner.gnm1.ann1.C2LQEN Arachis hypogaea HOM05D006702 ORTHO05D008540 2.8e-28 129.4 76 80.3
arahy.Tifrunner.gnm1.ann1.NQ6TBI Arachis hypogaea HOM05D006702 ORTHO05D008540 2.8e-28 129.4 76 80.3
CARHR118060 Cardamine hirsuta HOM05D006702 ORTHO05D008540 2.4e-27 126.3 89 67.4
CAN.G900.33 Capsicum annuum HOM05D006702 ORTHO05D008540 5.3e-27 125.2 94 61.7
Potri.006G124966 Populus trichocarpa HOM05D006702 ORTHO05D008540 9.0e-27 124.4 106 63.2
DCAR_014995 Daucus carota HOM05D006702 ORTHO05D008540 1.2e-26 124.0 91 64.8
Nitab4.5_0008928g0020 Nicotiana tabacum HOM05D006702 ORTHO05D008540 1.7e-25 120.2 97 59.8
Peaxi162Scf01139g00005 Petunia axillaris HOM05D006702 ORTHO05D008540 5.5e-24 115.2 97 58.8
Mapoly0013s0202 Marchantia polymorpha HOM05D006702 ORTHO05D008540 2.1e-23 113.2 112 48.2
Zm00001eb380050 Zea mays HOM05D006702 ORTHO05D008540 4.6e-23 112.1 116 53.4
unitig_0.g683 Utricularia gibba HOM05D006702 ORTHO05D008540 7.9e-23 111.3 80 65.0
AagrBONN_evm.TU.Sc2ySwM_368.2290 Anthoceros agrestis HOM05D006702 ORTHO05D008540 5.1e-22 108.6 100 53.0
SMO137G0384 Selaginella moellendorffii HOM05D006702 ORTHO05D008540 3.3e-21 105.9 87 56.3
Pp3c18_4750 Physcomitrium patens HOM05D006702 ORTHO05D008540 5.6e-21 105.1 106 48.1
AagrBONN_evm.TU.Sc2ySwM_362.139 Anthoceros agrestis HOM05D006702 ORTHO05D008540 1.3e-20 104.0 100 49.0
Os06g0264700 Oryza sativa ssp. japonica HOM05D006702 ORTHO05D008540 8.2e-20 101.3 123 49.6
Zm00001eb380040 Zea mays HOM05D006702 ORTHO05D008540 9.0e-19 97.8 107 52.3
Pp3c1_15300 Physcomitrium patens HOM05D006702 ORTHO05D008540 1.9e-16 90.1 89 47.2
Pp3c5_16270 Physcomitrium patens HOM05D006702 ORTHO05D008540 1.0e-09 67.8 84 38.1
Sabra06G0098700 Salix brachista HOM05D000002 ORTHO05D000047 2.2e-09 66.6 50 68.0
MSTRG.19178 Avicennia marina HOM05D006702 ORTHO05D008540 2.9e-09 66.2 141 37.6
CDE05G1088 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 1.9e-08 63.5 40 70.0


User provided reference genes

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