Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 1.0e-106 391.7 198 100.0
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.3e-77 295.0 194 78.4
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.8e-77 293.5 194 78.4
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 4.6e-75 286.6 182 81.3
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.0e-57 228.0 195 61.0
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 2.6e-57 227.6 193 61.1
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 9.7e-57 225.7 181 60.2
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 8.2e-56 222.6 196 59.2
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 4.1e-55 220.3 200 59.5
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 1.5e-54 218.4 173 65.9
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.2e-52 210.3 134 77.6
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 1.2e-51 208.8 192 55.7
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 4.4e-49 200.3 170 61.8
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 1.6e-46 191.8 186 54.3
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 1.0e-45 189.1 190 50.5
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.3e-45 188.7 180 56.1
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 1.7e-45 188.3 184 54.3
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 2.2e-45 188.0 200 51.5
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.2e-45 188.0 197 51.8
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.1e-44 185.7 199 50.8
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 9.4e-44 182.6 204 49.5
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 4.7e-43 180.3 189 50.8
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.4e-42 178.7 180 53.3
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 2.3e-42 177.9 157 55.4
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 4.0e-42 177.2 203 47.3
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 1.2e-41 175.6 180 52.8
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 2.4e-39 167.9 163 51.5
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 5.3e-39 166.8 166 54.2
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 7.0e-39 166.4 191 45.5
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 2.0e-38 164.9 186 43.5
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 2.0e-38 164.9 184 46.7
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 4.5e-38 163.7 194 46.4
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 7.7e-38 162.9 205 46.3
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.7e-37 161.8 181 48.6
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 8.5e-37 159.5 202 43.6
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.9e-36 158.3 171 45.6
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 1.9e-36 158.3 182 46.2
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 3.2e-36 157.5 196 43.9
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 5.5e-36 156.8 200 43.0
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 1.6e-35 155.2 181 48.1
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 6.1e-35 153.3 194 46.4
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 8.0e-35 152.9 191 43.5
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 8.0e-35 152.9 209 45.9
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 1.0e-34 152.5 170 43.5
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.0e-34 152.5 194 45.9
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 3.0e-34 151.0 192 44.8
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 3.0e-34 151.0 207 42.0
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 2.0e-33 148.3 192 44.3
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 4.4e-33 147.1 201 39.8
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.2e-32 144.8 200 44.0
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.7e-32 144.1 185 43.2
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.7e-32 144.1 185 43.2
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 4.8e-32 143.7 190 38.4
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 6.3e-32 143.3 188 41.0
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 6.3e-32 143.3 197 40.1
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 8.3e-32 142.9 185 43.8
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 8.3e-32 142.9 212 39.6
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 8.3e-32 142.9 188 43.1
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.8e-31 141.7 189 43.9
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.8e-31 141.7 185 42.7
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 3.1e-31 141.0 185 42.7
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 3.1e-31 141.0 189 42.9
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 7.0e-31 139.8 197 42.6
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 7.0e-31 139.8 198 40.9
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 9.1e-31 139.4 152 46.7
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 2.0e-30 138.3 193 42.0
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.5e-30 137.5 149 47.0
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 3.5e-30 137.5 151 43.7
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 7.7e-30 136.3 188 42.6
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 1.3e-29 135.6 195 42.6
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 1.3e-29 135.6 201 43.8
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 1.3e-29 135.6 180 42.2
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.3e-29 134.8 185 42.7
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 5.5e-28 130.2 195 39.0
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 1.6e-27 128.6 193 41.5
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 1.6e-27 128.6 181 37.6
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 2.8e-27 127.9 172 38.4
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 6.1e-27 126.7 193 41.5
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 1.0e-26 125.9 193 40.4
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 1.0e-26 125.9 193 40.9
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.4e-26 125.6 192 39.6
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 1.8e-26 125.2 181 40.9
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 3.0e-26 124.4 189 40.7
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 3.4e-25 120.9 196 36.7
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 9.8e-25 119.4 176 41.5
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.8e-24 117.9 196 38.3
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 3.7e-24 117.5 157 40.1
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 8.3e-24 116.3 190 34.7
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 1.1e-23 115.9 196 35.7
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 1.8e-23 115.2 170 40.0
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 4.1e-23 114.0 188 34.6
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 9.2e-23 112.8 183 35.0
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 1.6e-22 112.1 184 37.5
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 2.0e-22 111.7 181 32.6
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 2.7e-22 111.3 199 36.2
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 4.5e-22 110.5 170 35.9
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 1.3e-21 109.0 155 37.4
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 1.7e-21 108.6 155 37.4
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 2.9e-21 107.8 91 59.3
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.9e-21 107.8 196 33.2
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 2.9e-21 107.8 196 33.2
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 8.6e-21 106.3 188 34.6
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 8.6e-21 106.3 155 36.1
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 8.6e-21 106.3 98 54.1
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 3.3e-20 104.4 188 34.0
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 4.3e-20 104.0 179 35.8
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 5.6e-20 103.6 159 34.0
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 9.5e-20 102.8 191 33.5
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 9.5e-20 102.8 197 32.5
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.2e-19 102.4 197 34.0
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 1.6e-19 102.1 192 32.8
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 3.6e-19 100.9 179 33.5
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 4.7e-19 100.5 190 33.7
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 8.0e-19 99.8 179 35.2
CANSAT21G1589 Cannabis sativa HOM05D004255 ORTHO05D004815 1.0e-18 99.4 80 60.0
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.0e-18 99.4 205 30.7
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.8e-18 98.6 197 33.5
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 3.0e-18 97.8 171 32.2
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 5.2e-18 97.1 91 57.1
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 8.9e-18 96.3 130 39.2
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.2e-17 95.9 197 32.0
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.2e-17 95.9 147 34.7
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 4.4e-17 94.0 183 31.1
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 4.4e-17 94.0 224 30.4
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 9.8e-17 92.8 189 29.6
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 1.7e-16 92.0 114 45.6
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 6.4e-16 90.1 90 50.0
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.1e-15 89.4 96 45.8
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 4.1e-15 87.4 114 41.2
CANSAT11G1641 Cannabis sativa HOM05D004255 ORTHO05D004815 7.8e-14 83.2 66 62.1
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.0e-13 82.8 94 44.7
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 2.3e-13 81.6 197 30.5
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 6.6e-13 80.1 193 29.5
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.5e-12 79.0 149 26.8
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 4.3e-12 77.4 97 41.2
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 2.8e-11 74.7 172 32.6
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.8e-11 74.7 41 85.4
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 6.2e-11 73.6 191 27.2
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 8.9e-10 69.7 197 25.9
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.5e-09 68.9 107 35.5
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 1.3e-08 65.9 52 63.5
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.3e-08 65.9 74 43.2
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 1.7e-08 65.5 88 39.8
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 1.1e-07 62.8 98 36.7
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 1.4e-07 62.4 83 38.6
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 3.2e-07 61.2 123 29.3


User provided reference genes

Program Settings