Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 1.2e-54 216.1 99 100.0
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 6.6e-32 140.6 76 89.5
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 6.1e-30 134.0 72 87.5
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 1.4e-29 132.9 91 74.7
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 4.0e-29 131.3 70 88.6
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 4.0e-29 131.3 72 87.5
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.0e-29 131.3 72 87.5
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.0e-29 131.3 72 87.5
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 4.0e-29 131.3 73 84.9
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.2e-29 131.0 72 86.1
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.2e-29 131.0 72 86.1
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 5.2e-29 131.0 91 72.5
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 1.2e-28 129.8 69 88.4
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 1.5e-28 129.4 73 84.9
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 2.0e-28 129.0 72 84.7
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 2.0e-28 129.0 72 84.7
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 2.0e-28 129.0 91 71.4
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 2.0e-28 129.0 72 84.7
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 2.0e-28 129.0 72 84.7
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 2.0e-28 129.0 72 84.7
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 2.0e-28 129.0 72 84.7
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 2.0e-28 129.0 91 72.5
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 2.6e-28 128.6 72 84.7
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 2.6e-28 128.6 91 72.5
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.6e-28 128.6 72 83.3
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 2.6e-28 128.6 72 84.7
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 2.6e-28 128.6 72 84.7
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.4e-28 128.3 91 72.5
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.4e-28 128.3 91 72.5
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 3.4e-28 128.3 91 72.5
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 3.4e-28 128.3 91 71.4
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 4.4e-28 127.9 72 84.7
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 4.4e-28 127.9 72 84.7
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 4.4e-28 127.9 72 84.7
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 4.4e-28 127.9 72 83.3
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 4.4e-28 127.9 72 83.3
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 4.4e-28 127.9 72 83.3
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 4.4e-28 127.9 72 83.3
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 4.4e-28 127.9 91 72.5
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.4e-28 127.9 91 71.4
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 5.7e-28 127.5 72 84.7
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.7e-28 127.5 72 83.3
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 5.7e-28 127.5 72 83.3
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 5.7e-28 127.5 72 83.3
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 5.7e-28 127.5 72 83.3
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 5.7e-28 127.5 91 70.3
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 5.7e-28 127.5 91 72.5
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 9.8e-28 126.7 72 83.3
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 9.8e-28 126.7 72 83.3
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 9.8e-28 126.7 72 83.3
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 9.8e-28 126.7 72 81.9
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 9.8e-28 126.7 72 83.3
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 9.8e-28 126.7 72 83.3
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 2.2e-27 125.6 72 81.9
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 2.2e-27 125.6 72 81.9
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 2.9e-27 125.2 72 81.9
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.9e-27 125.2 72 81.9
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 2.9e-27 125.2 72 81.9
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.7e-27 124.8 72 81.9
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.7e-27 124.8 72 81.9
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 3.7e-27 124.8 70 82.9
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 3.7e-27 124.8 72 80.6
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 3.7e-27 124.8 72 81.9
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 3.7e-27 124.8 72 81.9
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 3.7e-27 124.8 72 80.6
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 4.9e-27 124.4 72 81.9
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 6.4e-27 124.0 72 80.6
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 6.4e-27 124.0 72 81.9
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 8.3e-27 123.6 91 70.3
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 8.3e-27 123.6 68 85.3
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 8.3e-27 123.6 72 77.8
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 1.1e-26 123.2 85 71.8
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 1.1e-26 123.2 72 80.6
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 1.4e-26 122.9 72 80.6
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 1.4e-26 122.9 72 80.6
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.4e-26 122.9 72 80.6
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.4e-26 122.9 72 80.6
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 1.4e-26 122.9 72 81.9
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 1.8e-26 122.5 72 81.9
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.8e-26 122.5 70 84.3
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 1.8e-26 122.5 72 79.2
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 2.4e-26 122.1 72 79.2
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 3.2e-26 121.7 72 79.2
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 3.2e-26 121.7 72 80.6
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 3.2e-26 121.7 72 80.6
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 3.2e-26 121.7 72 80.6
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 80.6
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 80.6
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 80.6
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 80.6
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 80.6
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 80.6
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 80.6
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 80.6
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 80.6
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 80.6
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 77.8
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 4.1e-26 121.3 72 80.6
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 5.4e-26 120.9 72 79.2
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 5.4e-26 120.9 72 79.2
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 5.4e-26 120.9 72 79.2
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 5.4e-26 120.9 72 79.2
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 7.0e-26 120.6 72 79.2
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 1.6e-25 119.4 72 77.8
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.6e-25 119.4 72 77.8
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 2.0e-25 119.0 72 76.4
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 2.0e-25 119.0 72 76.4
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 2.7e-25 118.6 69 81.2
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 4.6e-25 117.9 84 70.2
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 4.6e-25 117.9 71 81.7
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.3e-24 116.3 84 69.0
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 1.7e-24 115.9 72 76.4
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 1.7e-24 115.9 72 76.4
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 1.7e-24 115.9 72 73.6
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 3.0e-24 115.2 84 69.0
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 5.0e-24 114.4 72 77.8
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.1e-23 113.2 68 79.4
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 1.6e-22 109.4 72 73.6
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 6.2e-22 107.5 72 69.4
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 8.0e-22 107.1 72 69.4
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 5.2e-21 104.4 72 70.8
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.5e-20 102.8 60 81.7
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 2.6e-20 102.1 72 66.7
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 2.2e-19 99.0 73 61.6
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 2.9e-19 98.6 69 62.3
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 6.4e-19 97.4 76 69.7
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 5.4e-18 94.4 75 56.0
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 2.0e-17 92.4 67 65.7
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.4e-13 79.7 38 94.7
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 5.2e-13 77.8 59 61.0
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 6.8e-13 77.4 62 58.1
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 1.3e-11 73.2 68 45.6
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 6.0e-09 64.3 36 83.3
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 6.0e-09 64.3 72 51.4
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 1.7e-08 62.8 35 80.0
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 1.7e-08 62.8 40 75.0
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.9e-07 59.3 39 71.8
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 3.3e-07 58.5 39 71.8
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 7.3e-07 57.4 26 100.0
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 7.3e-07 57.4 26 100.0
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 6.2e-06 54.3 25 96.0


User provided reference genes

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