Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0469601 Rosa chinensis HOM05D006467 ORTHO05D008012 1.1e-63 246.5 131 100.0
FAN09G2873 Fragaria x ananassa HOM05D006467 ORTHO05D008012 1.9e-55 219.2 131 89.3
FAN14G3947 Fragaria x ananassa HOM05D006467 ORTHO05D008012 2.1e-54 215.7 131 87.0
FAN02G4276 Fragaria x ananassa HOM05D006467 ORTHO05D008012 4.0e-53 211.5 131 86.3
FvH4_6g15910 Fragaria vesca HOM05D006467 ORTHO05D008012 2.6e-52 208.8 138 82.6
Prupe.6G236600 Prunus persica HOM05D006467 ORTHO05D008012 4.6e-49 198.0 132 79.5
MD04G1097300 Malus domestica HOM05D006467 ORTHO05D008012 1.5e-44 183.0 133 72.9
MD12G1118700 Malus domestica HOM05D006467 ORTHO05D008012 9.3e-42 173.7 126 72.2
CiPaw.09G176000 Carya illinoinensis HOM05D006467 ORTHO05D008012 7.3e-39 164.1 130 64.6
Cfa017565 Carpinus fangiana HOM05D006467 ORTHO05D008012 1.6e-38 162.9 130 64.6
Potri.016G090000 Populus trichocarpa HOM05D006467 ORTHO05D008012 4.8e-38 161.4 124 69.4
QL07p044433 Quercus lobata HOM05D006467 ORTHO05D008012 1.1e-37 160.2 130 65.4
GSVIVG01025685001 Vitis vinifera HOM05D006467 ORTHO05D008012 1.8e-37 159.5 115 73.9
Lj2A112T40 Lonicera japonica HOM05D006467 ORTHO05D008012 2.4e-37 159.1 121 71.9
CSS0042234 Camellia sinensis var. sinensis HOM05D006467 ORTHO05D008012 6.9e-37 157.5 125 64.0
Manes.08G007300 Manihot esculenta HOM05D006467 ORTHO05D008012 4.4e-36 154.8 124 67.7
Potri.006G127800 Populus trichocarpa HOM05D006467 ORTHO05D008012 4.4e-36 154.8 124 66.1
Lsat_1_v5_gn_2_109060 Lactuca sativa HOM05D006467 ORTHO05D008012 5.8e-36 154.5 120 67.5
Ciclev10013106m.g Citrus clementina HOM05D006467 ORTHO05D008012 7.6e-36 154.1 125 64.8
Sabra16G0095600 Salix brachista HOM05D006467 ORTHO05D008012 2.2e-35 152.5 141 61.7
Dinv35529 Davidia involucrata HOM05D006467 ORTHO05D008012 4.9e-35 151.4 124 62.9
TWI77G0724 Tripterygium wilfordii HOM05D006467 ORTHO05D008012 1.1e-34 150.2 125 60.0
Cpa.g.sc102.12 Carica papaya HOM05D006467 ORTHO05D008012 1.9e-34 149.4 124 62.9
Dinv35757 Davidia involucrata HOM05D006467 ORTHO05D008012 1.9e-34 149.4 125 63.2
Thecc.05G060700 Theobroma cacao HOM05D006467 ORTHO05D008012 5.4e-34 147.9 124 58.1
Actinidia19675 Actinidia chinensis HOM05D006467 ORTHO05D008012 1.2e-33 146.7 125 59.2
Hma1.2p1_0614F.1_g189470 Hydrangea macrophylla HOM05D006467 ORTHO05D008012 1.2e-33 146.7 126 60.3
Nitab4.5_0003923g0010 Nicotiana tabacum HOM05D006467 ORTHO05D008012 1.2e-33 146.7 126 63.5
Peaxi162Scf00123g00014 Petunia axillaris HOM05D006467 ORTHO05D008012 1.2e-33 146.7 124 62.9
Sc02g0001830 Simmondsia chinensis HOM05D006467 ORTHO05D008012 1.2e-33 146.7 119 65.5
TAR623G0732 Trochodendron aralioides HOM05D006467 ORTHO05D008012 1.2e-33 146.7 129 59.7
Lj5g0010745 Lotus japonicus HOM05D006467 ORTHO05D008012 2.1e-33 146.0 125 60.0
Sopen09g002640 Solanum pennellii HOM05D006467 ORTHO05D008012 2.1e-33 146.0 126 61.9
Glyma.10G053300 Glycine max HOM05D006467 ORTHO05D008012 7.9e-33 144.1 125 56.8
PGSC0003DMG400021546 Solanum tuberosum HOM05D006467 ORTHO05D008012 7.9e-33 144.1 126 61.9
Solyc09g007800.3 Solanum lycopersicum HOM05D006467 ORTHO05D008012 1.0e-32 143.7 126 61.1
Oeu059967.1 Olea europaea HOM05D006467 ORTHO05D008012 1.3e-32 143.3 129 56.6
VMungo0720G0455 Vigna mungo HOM05D006467 ORTHO05D008012 1.3e-32 143.3 125 55.2
Atru.chr8.1867 Acer truncatum HOM05D006467 ORTHO05D008012 1.7e-32 142.9 126 57.9
Nitab4.5_0000101g0130 Nicotiana tabacum HOM05D006467 ORTHO05D008012 1.7e-32 142.9 126 61.1
CANSAT80G0273 Cannabis sativa HOM05D006467 ORTHO05D008012 2.3e-32 142.5 132 56.8
ECA238G0062 Erigeron canadensis HOM05D006467 ORTHO05D008012 2.3e-32 142.5 119 62.2
TAR369G0155 Trochodendron aralioides HOM05D006467 ORTHO05D008012 3.0e-32 142.1 126 61.1
Medtr1g064490 Medicago truncatula HOM05D006467 ORTHO05D008012 3.9e-32 141.7 125 56.8
Gohir.D09G145300 Gossypium hirsutum HOM05D006467 ORTHO05D008012 5.1e-32 141.4 123 56.1
EL10Ac7g16554 Beta vulgaris HOM05D006467 ORTHO05D008012 8.7e-32 140.6 125 58.4
Gohir.A04G074100 Gossypium hirsutum HOM05D006467 ORTHO05D008012 8.7e-32 140.6 122 55.7
Nn2g10804 Nelumbo nucifera HOM05D006467 ORTHO05D008012 1.1e-31 140.2 121 61.2
Gohir.A09G149400 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.5e-31 139.8 123 56.1
Lalb_Chr21g0314871 Lupinus albus HOM05D006467 ORTHO05D008012 1.5e-31 139.8 124 57.3
CAN.G888.4 Capsicum annuum HOM05D006467 ORTHO05D008012 1.9e-31 139.4 124 60.5
Glyma.13G140300 Glycine max HOM05D006467 ORTHO05D008012 1.9e-31 139.4 128 53.1
HanXRQChr07g0195271 Helianthus annuus HOM05D006467 ORTHO05D008012 1.9e-31 139.4 121 60.3
TPR.G21203 Trifolium pratense HOM05D006467 ORTHO05D008012 1.9e-31 139.4 125 56.8
Nn2g13105 Nelumbo nucifera HOM05D006467 ORTHO05D008012 4.3e-31 138.3 126 56.3
MSTRG.19165 Avicennia marina HOM05D006467 ORTHO05D008012 5.6e-31 137.9 129 54.3
Duzib128G1557 Durio zibethinus HOM05D006467 ORTHO05D008012 5.6e-31 137.9 127 55.1
MELO3C009340.2 Cucumis melo HOM05D006467 ORTHO05D008012 1.3e-30 136.7 124 54.8
Ca_11474_v3 Cicer arietinum L. HOM05D006467 ORTHO05D008012 1.6e-30 136.3 125 55.2
THA.LOC104823447 Tarenaya hassleriana HOM05D006467 ORTHO05D008012 1.6e-30 136.3 127 57.5
AL4G33560 Arabidopsis lyrata HOM05D006467 ORTHO05D008012 2.1e-30 136.0 127 59.1
A03p20520 Brassica napus HOM05D006467 ORTHO05D008012 4.8e-30 134.8 127 58.3
BraA03t11294Z Brassica rapa HOM05D006467 ORTHO05D008012 4.8e-30 134.8 127 58.3
C03p24120 Brassica napus HOM05D006467 ORTHO05D008012 6.2e-30 134.4 127 57.5
COL.COLO4_27023 Corchorus olitorius HOM05D006467 ORTHO05D008012 6.2e-30 134.4 150 49.3
Gorai.009G417600 Gossypium raimondii HOM05D006467 ORTHO05D008012 1.1e-29 133.7 134 50.7
CsaV3_3G035800 Cucumis sativus L. HOM05D006467 ORTHO05D008012 1.4e-29 133.3 124 54.8
Aqoxy1G01232 Aquilegia oxysepala HOM05D006467 ORTHO05D008012 1.8e-29 132.9 123 56.1
BcaC01g06644 Brassica carinata HOM05D006467 ORTHO05D008012 1.8e-29 132.9 127 56.7
SGA_v2.0_scaffold40G15542 Striga asiatica HOM05D006467 ORTHO05D008012 3.1e-29 132.1 133 54.1
Thhalv10017389m.g Eutrema salsugineum HOM05D006467 ORTHO05D008012 5.3e-29 131.3 127 56.7
Gorai.006G166500 Gossypium raimondii HOM05D006467 ORTHO05D008012 5.3e-29 131.3 138 50.0
BolC3t14804H Brassica oleracea HOM05D006467 ORTHO05D008012 6.9e-29 131.0 128 57.0
Carub.0004s1909 Capsella rubella HOM05D006467 ORTHO05D008012 6.9e-29 131.0 127 55.9
Phvul.007G220100 Phaseolus vulgaris HOM05D006467 ORTHO05D008012 6.9e-29 131.0 124 52.4
AT2G37195 Arabidopsis thaliana HOM05D006467 ORTHO05D008012 9.0e-29 130.6 127 56.7
PSO063G5019 Papaver somniferum HOM05D006467 ORTHO05D008012 9.0e-29 130.6 126 54.0
PSO339G1849 Papaver somniferum HOM05D006467 ORTHO05D008012 9.0e-29 130.6 126 54.0
vmacro20032 Vaccinium macrocarpon HOM05D006467 ORTHO05D008012 1.2e-28 130.2 157 49.0
arahy.Tifrunner.gnm1.ann1.HNS49Q Arachis hypogaea HOM05D006467 ORTHO05D008012 2.0e-28 129.4 121 53.7
arahy.Tifrunner.gnm1.ann1.RH0WXQ Arachis hypogaea HOM05D006467 ORTHO05D008012 2.0e-28 129.4 121 53.7
arahy.Tifrunner.gnm1.ann1.VPUZ6C Arachis hypogaea HOM05D006467 ORTHO05D008012 2.0e-28 129.4 121 53.7
Migut.J00532 Erythranthe guttata HOM05D006467 ORTHO05D008012 2.0e-28 129.4 118 56.8
SalBow8G4982 Salvia bowleyana HOM05D006467 ORTHO05D008012 2.0e-28 129.4 129 53.5
ClCG10G020300 Citrullus lanatus HOM05D006467 ORTHO05D008012 2.6e-28 129.0 124 53.2
Sp4g19510 Schrenkiella parvula HOM05D006467 ORTHO05D008012 5.8e-28 127.9 127 55.9
CARHR131710 Cardamine hirsuta HOM05D006467 ORTHO05D008012 9.9e-28 127.1 122 57.4
Cc06_g03930 Coffea canephora HOM05D006467 ORTHO05D008012 2.2e-27 125.9 112 57.1
Sabra06G0100500 Salix brachista HOM05D006467 ORTHO05D008012 2.2e-27 125.9 158 48.7
PGR142G2369 Punica granatum HOM05D006467 ORTHO05D008012 1.1e-26 123.6 127 53.5
Aa31LG5G22520 Aethionema arabicum HOM05D006467 ORTHO05D008012 1.9e-26 122.9 129 52.7
Ah.15g092380 Amaranthus hybridus HOM05D006467 ORTHO05D008012 5.5e-26 121.3 121 52.1
FvH4_1g27957 Fragaria vesca HOM05D000871 ORTHO05D008012 7.1e-26 120.9 85 78.8
Sed0017827 Sechium edule HOM05D006467 ORTHO05D008012 7.1e-26 120.9 124 51.6
AUR62033514 Chenopodium quinoa HOM05D006467 ORTHO05D008012 9.3e-26 120.6 125 52.0
AUR62028561 Chenopodium quinoa HOM05D006467 ORTHO05D008012 2.7e-25 119.0 127 51.2
Haze_20589 Corylus avellana HOM05D006467 ORTHO05D008012 7.9e-25 117.5 81 67.9
Gohir.D04G113200 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.0e-24 117.1 99 54.5
MBI07_g19293_MAGBIO Magnolia biondii HOM05D006467 ORTHO05D008012 3.9e-24 115.2 115 53.0
FvH4_1g28030 Fragaria vesca HOM05D000871 ORTHO05D008012 5.6e-23 111.3 66 87.9
Dinv37285 Davidia involucrata HOM05D006467 ORTHO05D008012 3.7e-22 108.6 78 64.1
DCAR_009295 Daucus carota HOM05D006467 ORTHO05D008012 1.4e-21 106.7 78 64.1
Psat6g070840 Pisum sativum HOM05D006467 ORTHO05D008012 7.6e-20 100.9 73 61.6
Eucgr.K03249 Eucalyptus grandis HOM05D006467 ORTHO05D008012 6.5e-19 97.8 102 51.0
Hund20246 Selenicereus undatus HOM05D006467 ORTHO05D008012 1.4e-18 96.7 79 55.7
HPP92_022407 Vanilla planifolia HOM05D006467 ORTHO05D008012 1.2e-17 93.6 127 44.1
HPP92_027503 Vanilla planifolia HOM05D006467 ORTHO05D008012 1.6e-17 93.2 125 43.2
Zm00001eb191980 Zea mays HOM05D006467 ORTHO05D008012 1.6e-14 83.2 136 39.7
Zm00001eb258270 Zea mays HOM05D006467 ORTHO05D008012 8.2e-14 80.9 125 40.0
ATR0048G054 Amborella trichopoda HOM05D006467 ORTHO05D008012 1.1e-13 80.5 102 47.1
unitig_27.g25371 Utricularia gibba HOM05D006467 ORTHO05D008012 9.0e-13 77.4 84 42.9
Os02g0805700 Oryza sativa ssp. japonica HOM05D006467 ORTHO05D008012 1.5e-12 76.6 115 37.4
BcaC03g13318 Brassica carinata HOM05D006467 ORTHO05D008012 1.0e-11 73.9 95 46.3
BcaC03g13319 Brassica carinata HOM05D006467 ORTHO05D008012 1.0e-11 73.9 95 46.3
FAN26G0965 Fragaria x ananassa HOM05D000871 ORTHO05D011596 1.3e-11 73.6 40 90.0
C07p17010 Brassica napus HOM05D006467 ORTHO05D008012 3.2e-10 68.9 84 48.8
C02p04540 Brassica napus HOM05D006467 ORTHO05D008012 5.5e-10 68.2 84 48.8
C06p12980 Brassica napus HOM05D006467 ORTHO05D008012 1.6e-09 66.6 86 47.7
BolC1t01590H Brassica oleracea HOM05D006467 ORTHO05D008012 3.5e-09 65.5 84 47.6
BcaC08g43911 Brassica carinata HOM05D006467 ORTHO05D008012 2.3e-08 62.8 47 63.8
PSO063G7135 Papaver somniferum HOM05D000530 ORTHO05D000621 2.8e-06 55.8 39 66.7


User provided reference genes

Program Settings