Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0469471 Rosa chinensis HOM05D000054 ORTHO05D000286 6.1e-39 163.7 84 100.0
FvH4_6g15760 Fragaria vesca HOM05D000054 ORTHO05D000286 8.0e-31 136.7 84 86.9
FAN14G2198 Fragaria x ananassa HOM05D000054 ORTHO05D000286 2.3e-30 135.2 84 85.7
FAN14G2285 Fragaria x ananassa HOM05D000054 ORTHO05D000286 2.3e-30 135.2 84 85.7
FAN05G4138 Fragaria x ananassa HOM05D000054 ORTHO05D000286 3.1e-30 134.8 84 85.7
FAN09G0183 Fragaria x ananassa HOM05D000054 ORTHO05D000286 4.0e-30 134.4 84 85.7
FAN02G0687 Fragaria x ananassa HOM05D000054 ORTHO05D000286 9.8e-29 129.8 84 82.1
Prupe.6G237400 Prunus persica HOM05D000054 ORTHO05D000286 4.6e-18 94.4 77 61.0
MD12G1119500 Malus domestica HOM05D000054 ORTHO05D000286 3.3e-16 88.2 82 56.1
MD04G1098900 Malus domestica HOM05D000054 ORTHO05D000286 1.3e-12 76.3 70 57.1
CANSAT80G1057 Cannabis sativa HOM05D000054 ORTHO05D000286 2.1e-10 68.9 75 52.0
Sabra06G0101200 Salix brachista HOM05D000054 ORTHO05D000286 1.3e-09 66.2 69 52.2
Thecc.05G058300 Theobroma cacao HOM05D000054 ORTHO05D000286 2.3e-09 65.5 70 48.6
Gohir.D09G146000 Gossypium hirsutum HOM05D000054 ORTHO05D000286 3.0e-09 65.1 76 47.4
Gorai.006G167100 Gossypium raimondii HOM05D000054 ORTHO05D000286 3.0e-09 65.1 76 47.4
COL.COLO4_27036 Corchorus olitorius HOM05D000054 ORTHO05D000286 5.1e-09 64.3 73 47.9
Dinv35751 Davidia involucrata HOM05D000054 ORTHO05D000286 6.6e-09 63.9 70 48.6
Duzib093G0703 Durio zibethinus HOM05D000054 ORTHO05D000286 6.6e-09 63.9 76 47.4
Gohir.A09G150201 Gossypium hirsutum HOM05D000054 ORTHO05D000286 1.9e-08 62.4 76 46.1
QL07p044609 Quercus lobata HOM05D000054 ORTHO05D000286 1.9e-08 62.4 75 44.0
TWI53G1688 Tripterygium wilfordii HOM05D000054 ORTHO05D000286 1.9e-08 62.4 63 47.6
CiPaw.10G134100 Carya illinoinensis HOM05D000054 ORTHO05D000286 2.5e-08 62.0 74 45.9
Duzib128G0006 Durio zibethinus HOM05D000054 ORTHO05D000286 2.5e-08 62.0 52 55.8
Potri.006G128500 Populus trichocarpa HOM05D000054 ORTHO05D000286 2.5e-08 62.0 69 47.8
Gohir.A10G206700 Gossypium hirsutum HOM05D000054 ORTHO05D000286 4.3e-08 61.2 64 46.9
GSVIVG01025676001 Vitis vinifera HOM05D000054 ORTHO05D000286 4.3e-08 61.2 72 44.4
Dinv37280 Davidia involucrata HOM05D000054 ORTHO05D000286 5.6e-08 60.8 55 52.7
Gohir.D10G214800 Gossypium hirsutum HOM05D000054 ORTHO05D000286 5.6e-08 60.8 64 43.8
Lj3C980T7 Lonicera japonica HOM05D000054 ORTHO05D000286 9.6e-08 60.1 64 43.8
MBI10_g04880_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000286 1.6e-07 59.3 76 44.7
TPR.G21199 Trifolium pratense HOM05D000054 ORTHO05D000286 1.6e-07 59.3 76 44.7
Gorai.011G240400 Gossypium raimondii HOM05D000054 ORTHO05D000286 2.1e-07 58.9 64 43.8
Oeu001350.2 Olea europaea HOM05D000054 ORTHO05D000286 2.1e-07 58.9 73 39.7
Oeu027983.2 Olea europaea HOM05D000054 ORTHO05D000286 2.1e-07 58.9 73 41.1
Potri.010G221400 Populus trichocarpa HOM05D000054 ORTHO05D000286 2.1e-07 58.9 52 48.1
HPP92_009429 Vanilla planifolia HOM05D000054 ORTHO05D000286 2.1e-07 58.9 80 40.0
HPP92_009449 Vanilla planifolia HOM05D000054 ORTHO05D000286 2.1e-07 58.9 80 40.0
Nn2g10772 Nelumbo nucifera HOM05D000054 ORTHO05D000286 2.8e-07 58.5 76 35.5
Manes.08G006500 Manihot esculenta HOM05D000054 ORTHO05D000286 3.6e-07 58.2 55 49.1
TAR629G3432 Trochodendron aralioides HOM05D000054 ORTHO05D000286 3.6e-07 58.2 71 42.3
TAR623G1364 Trochodendron aralioides HOM05D000054 ORTHO05D000286 4.7e-07 57.8 63 42.9
VMungo0720G1010 Vigna mungo HOM05D000054 ORTHO05D000286 4.7e-07 57.8 69 40.6
ClCG04G008960 Citrullus lanatus HOM05D000054 ORTHO05D000286 6.2e-07 57.4 71 45.1
Glyma.10G052500 Glycine max HOM05D000054 ORTHO05D000286 6.2e-07 57.4 76 40.8
Lalb_Chr02g0156201 Lupinus albus HOM05D000054 ORTHO05D000286 6.2e-07 57.4 83 41.0
TWI39G1209 Tripterygium wilfordii HOM05D000054 ORTHO05D000286 6.2e-07 57.4 73 39.7
CsaV3_6G039470 Cucumis sativus L. HOM05D000054 ORTHO05D000286 8.1e-07 57.0 69 47.8
DCAR_009293 Daucus carota HOM05D000054 ORTHO05D000286 1.4e-06 56.2 62 43.5
Eucgr.A01155 Eucalyptus grandis HOM05D000054 ORTHO05D000286 1.4e-06 56.2 70 40.0
HanXRQChr11g0335191 Helianthus annuus HOM05D000054 ORTHO05D000286 1.4e-06 56.2 50 44.0
Sabra10G0171300 Salix brachista HOM05D000054 ORTHO05D000286 1.4e-06 56.2 52 44.2
Cc06_g03870 Coffea canephora HOM05D000054 ORTHO05D000286 1.8e-06 55.8 71 39.4
MELO3C014246.2 Cucumis melo HOM05D000054 ORTHO05D000286 1.8e-06 55.8 69 46.4
Lj5g0027209 Lotus japonicus HOM05D000054 ORTHO05D000286 1.8e-06 55.8 76 42.1
Atru.chr8.1873 Acer truncatum HOM05D000054 ORTHO05D000286 2.4e-06 55.5 74 43.2
CiPaw.09G176800 Carya illinoinensis HOM05D000054 ORTHO05D000286 2.4e-06 55.5 69 44.9
Ca_11466_v3 Cicer arietinum L. HOM05D000054 ORTHO05D000286 2.4e-06 55.5 77 40.3
Manes.07G101400 Manihot esculenta HOM05D000054 ORTHO05D000286 2.4e-06 55.5 55 41.8
Medtr1g064630 Medicago truncatula HOM05D000054 ORTHO05D000286 2.4e-06 55.5 59 50.8
PGR083G1091 Punica granatum HOM05D000054 ORTHO05D000286 2.4e-06 55.5 82 36.6
Sed0006395 Sechium edule HOM05D000054 ORTHO05D000286 2.4e-06 55.5 69 46.4
Atru.chr2.2208 Acer truncatum HOM05D000054 ORTHO05D000286 3.1e-06 55.1 54 44.4
Ah.06g185090 Amaranthus hybridus HOM05D000054 ORTHO05D000286 3.1e-06 55.1 79 38.0
Ciclev10032157m.g Citrus clementina HOM05D000054 ORTHO05D000286 3.1e-06 55.1 62 43.5
SalBow3G1350 Salvia bowleyana HOM05D000054 ORTHO05D000286 3.1e-06 55.1 76 43.4
VMungo1127G0397 Vigna mungo HOM05D000054 ORTHO05D000286 3.1e-06 55.1 86 36.0
Actinidia33325 Actinidia chinensis HOM05D000054 ORTHO05D000286 4.0e-06 54.7 76 42.1
CAN.G888.10 Capsicum annuum HOM05D000054 ORTHO05D000286 4.0e-06 54.7 82 41.5
Eucgr.F01220 Eucalyptus grandis HOM05D000054 ORTHO05D000286 4.0e-06 54.7 72 41.7
Oeu002813.1 Olea europaea HOM05D000054 ORTHO05D000286 4.0e-06 54.7 50 50.0
SalBow3G3352 Salvia bowleyana HOM05D000054 ORTHO05D000286 4.0e-06 54.7 75 44.0
TWI39G1236 Tripterygium wilfordii HOM05D000054 ORTHO05D000286 4.0e-06 54.7 80 40.0
arahy.Tifrunner.gnm1.ann1.CMI41D Arachis hypogaea HOM05D000054 ORTHO05D000286 5.2e-06 54.3 72 44.4
Cfa017542 Carpinus fangiana HOM05D000054 ORTHO05D000286 5.2e-06 54.3 80 42.5
HanXRQChr14g0454401 Helianthus annuus HOM05D000054 ORTHO05D000286 5.2e-06 54.3 55 41.8
Psat6g066920 Pisum sativum HOM05D000054 ORTHO05D000286 6.9e-06 53.9 77 41.6
Rhsim05G0181900 Rhododendron simsii HOM05D000054 ORTHO05D000286 6.9e-06 53.9 72 37.5
TAR624G0282 Trochodendron aralioides HOM05D000054 ORTHO05D000286 6.9e-06 53.9 76 35.5
Lj1A903T68 Lonicera japonica HOM05D000054 ORTHO05D000286 9.0e-06 53.5 90 37.8
Nn7g37706 Nelumbo nucifera HOM05D000054 ORTHO05D000286 9.0e-06 53.5 83 37.3
Phvul.007G220800 Phaseolus vulgaris HOM05D000054 ORTHO05D000286 9.0e-06 53.5 75 36.0
QL04p075215 Quercus lobata HOM05D000054 ORTHO05D000286 9.0e-06 53.5 68 36.8
TAR626G1822 Trochodendron aralioides HOM05D000054 ORTHO05D000286 9.0e-06 53.5 78 38.5


User provided reference genes

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