Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 1.6e-126 456.1 221 100.0
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 5.6e-116 421.0 221 91.0
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.4e-114 416.4 219 90.4
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 9.0e-114 413.7 221 90.0
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.2e-113 413.3 219 90.4
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.4e-113 411.4 220 89.5
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 3.8e-104 381.7 218 83.5
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.2e-102 376.7 219 81.7
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 3.5e-102 375.2 215 83.7
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 1.8e-101 372.9 217 81.6
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 2.4e-98 362.5 220 77.3
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.4e-98 362.5 219 79.9
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 5.3e-98 361.3 219 79.5
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 2.6e-97 359.0 220 77.7
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 3.4e-97 358.6 219 79.9
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 5.8e-97 357.8 215 80.0
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 1.9e-95 352.8 209 78.0
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 3.2e-95 352.1 210 79.0
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 9.3e-95 350.5 216 78.7
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 6.0e-94 347.8 219 77.2
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 2.3e-93 345.9 219 76.7
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 6.7e-93 344.4 219 76.3
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.3e-91 340.1 218 74.8
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 4.8e-91 338.2 208 78.8
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 6.3e-91 337.8 214 78.0
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 8.2e-91 337.4 218 73.9
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.1e-90 337.0 211 78.2
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.8e-90 336.3 212 79.2
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 3.1e-90 335.5 216 75.5
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 4.1e-90 335.1 214 74.3
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 1.2e-89 333.6 214 74.8
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 1.2e-89 333.6 214 76.2
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.5e-89 333.2 219 74.4
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 2.6e-89 332.4 214 75.7
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 2.6e-89 332.4 216 75.5
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 3.4e-89 332.0 217 74.7
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 7.6e-89 330.9 217 75.1
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 1.7e-88 329.7 214 75.2
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 6.5e-88 327.8 212 73.6
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.4e-87 326.6 210 73.3
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 1.9e-87 326.2 209 73.2
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 1.9e-87 326.2 209 73.2
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 4.2e-87 325.1 216 73.6
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 4.2e-87 325.1 218 72.0
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 5.5e-87 324.7 220 71.4
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 1.6e-86 323.2 210 72.4
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 2.1e-86 322.8 218 69.7
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 3.6e-86 322.0 210 71.9
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 3.6e-86 322.0 210 71.9
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 4.6e-86 321.6 218 71.1
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 6.1e-86 321.2 219 70.8
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 6.1e-86 321.2 219 73.5
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 6.1e-86 321.2 219 73.5
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 6.1e-86 321.2 219 73.5
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 6.1e-86 321.2 219 73.5
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 6.1e-86 321.2 219 73.5
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 1.0e-85 320.5 213 71.4
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 2.3e-85 319.3 214 69.2
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 8.7e-85 317.4 223 68.6
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 1.1e-84 317.0 219 70.3
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.1e-84 317.0 217 71.4
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 5.7e-84 314.7 218 69.3
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 7.4e-84 314.3 219 69.4
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.2e-83 312.8 216 71.3
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.7e-83 312.0 221 70.6
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 3.7e-83 312.0 214 69.6
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 8.2e-83 310.8 217 71.4
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 8.2e-83 310.8 217 71.4
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.4e-82 310.1 221 67.9
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 5.3e-82 308.1 214 71.0
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 6.9e-82 307.8 218 69.3
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 6.9e-82 307.8 221 70.6
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 1.2e-81 307.0 217 70.0
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 1.2e-81 307.0 217 70.5
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.5e-81 306.6 212 71.2
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 2.6e-81 305.8 211 69.7
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 3.4e-81 305.4 221 66.5
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 4.5e-81 305.1 217 67.7
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 7.7e-81 304.3 217 70.5
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.3e-80 303.5 215 70.2
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 2.2e-80 302.8 200 73.0
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 2.9e-80 302.4 220 68.6
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 1.1e-79 300.4 217 68.7
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.9e-79 299.7 218 68.3
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 2.5e-79 299.3 221 67.4
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 7.2e-79 297.7 222 68.9
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.6e-78 296.6 215 69.3
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 4.6e-78 295.0 220 67.3
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.8e-77 293.1 214 68.2
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 1.8e-77 293.1 212 65.1
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.0e-77 292.4 214 68.2
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 3.9e-77 292.0 216 67.6
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 5.1e-77 291.6 216 65.7
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 5.1e-77 291.6 215 67.4
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 5.1e-77 291.6 215 67.4
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 8.8e-77 290.8 214 65.9
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 8.8e-77 290.8 217 66.4
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 4.3e-76 288.5 214 65.9
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 4.3e-76 288.5 208 68.3
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 1.3e-75 287.0 208 67.3
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 3.7e-75 285.4 217 65.9
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 6.3e-75 284.6 212 65.6
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 8.2e-75 284.3 216 65.7
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 8.2e-75 284.3 220 64.1
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 1.1e-74 283.9 216 66.2
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 2.6e-73 279.3 184 71.2
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 5.9e-73 278.1 219 59.8
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 6.5e-72 274.6 208 61.1
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.4e-71 273.5 214 65.9
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 5.5e-71 271.6 213 63.4
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 5.5e-71 271.6 213 63.4
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 3.6e-70 268.9 168 80.4
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 7.9e-70 267.7 213 62.9
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 5.7e-68 261.5 208 57.2
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 7.4e-68 261.2 212 59.4
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 1.8e-66 256.5 217 62.7
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.4e-66 256.1 208 57.2
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 2.4e-66 256.1 208 58.2
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 2.0e-65 253.1 214 58.9
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 1.0e-64 250.8 167 74.3
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 7.2e-63 244.6 169 72.8
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 3.6e-62 242.3 159 73.0
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 4.0e-61 238.8 137 83.2
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 5.2e-61 238.4 219 57.5
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.4e-60 235.3 161 72.7
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 7.0e-58 228.0 162 66.0
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 1.7e-56 223.4 171 64.3
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 6.5e-56 221.5 216 56.5
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 3.6e-54 215.7 210 59.0
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 1.8e-53 213.4 130 74.6
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.5e-52 210.3 220 53.2
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 2.2e-48 196.4 135 68.1
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 2.1e-46 189.9 221 51.6
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 9.8e-44 181.0 217 50.2
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 5.4e-42 175.3 133 64.7
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 2.3e-32 143.3 94 74.5
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 3.9e-32 142.5 90 75.6
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 5.8e-28 128.6 96 64.6
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 9.8e-20 101.3 187 35.3
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 1.6e-09 67.4 141 31.9
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 4.6e-09 65.9 146 30.8
Manes.02G096600 Manihot esculenta HOM05D003144 ORTHO05D003539 1.3e-08 64.3 131 28.2
CDE11G1071 Ceratophyllum demersum HOM05D003144 ORTHO05D003539 6.6e-08 62.0 164 25.0
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 5.6e-07 58.9 161 28.6
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 9.6e-07 58.2 113 32.7
AUR62004087 Chenopodium quinoa HOM05D003144 ORTHO05D003539 1.2e-06 57.8 148 28.4
Cfa004341 Carpinus fangiana HOM05D003144 ORTHO05D003539 2.8e-06 56.6 141 27.0
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 3.6e-06 56.2 119 31.1
Haze_15060 Corylus avellana HOM05D003144 ORTHO05D003539 8.1e-06 55.1 141 26.2
SalBow1G3910 Salvia bowleyana HOM05D007612 ORTHO05D009468 8.1e-06 55.1 127 33.1


User provided reference genes

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