Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0468611 Rosa chinensis HOM05D003293 ORTHO05D013446 2.0e-130 469.2 247 100.0
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 2.0e-90 336.3 256 72.3
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 3.4e-85 318.9 255 68.2
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 4.4e-85 318.5 255 68.2
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 7.5e-85 317.8 255 67.8
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 2.2e-84 316.2 255 67.8
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.4e-83 312.8 256 67.2
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 6.8e-78 294.7 248 67.3
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 1.2e-77 293.9 256 63.3
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 9.8e-77 290.8 256 62.1
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 2.9e-76 289.3 256 62.9
RcHm_v2.0_Chr1g0350061 Rosa chinensis HOM05D003293 ORTHO05D013446 4.9e-76 288.5 251 65.3
RcHm_v2.0_Chr2g0101951 Rosa chinensis HOM05D003293 ORTHO05D013446 3.2e-75 285.8 250 65.2
RcHm_v2.0_Chr2g0155871 Rosa chinensis HOM05D003293 ORTHO05D013446 1.2e-74 283.9 188 82.4
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 2.7e-74 282.7 249 65.1
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 7.8e-74 281.2 256 60.9
RcHm_v2.0_Chr7g0234111 Rosa chinensis HOM05D003293 ORTHO05D013446 1.3e-73 280.4 250 64.4
RcHm_v2.0_Chr7g0231801 Rosa chinensis HOM05D003293 ORTHO05D013446 2.3e-73 279.6 186 81.7
RcHm_v2.0_Chr7g0238791 Rosa chinensis HOM05D003293 ORTHO05D013446 2.9e-73 279.3 249 64.7
RcHm_v2.0_Chr4g0401281 Rosa chinensis HOM05D003293 ORTHO05D013446 8.6e-73 277.7 186 81.7
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 6.8e-62 241.5 258 53.1
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.7e-60 236.9 258 52.3
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 7.1e-59 231.5 259 50.2
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 2.7e-58 229.6 266 51.1
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 7.8e-58 228.0 255 50.2
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 5.1e-57 225.3 255 48.6
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 1.1e-56 224.2 255 49.8
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 1.1e-56 224.2 256 52.7
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 1.5e-56 223.8 255 49.8
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.9e-56 223.4 258 50.0
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 5.6e-56 221.9 256 50.0
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 6.2e-55 218.4 257 50.6
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 3.1e-54 216.1 256 50.4
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 3.1e-54 216.1 256 49.2
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 4.0e-54 215.7 256 49.2
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.2e-53 214.2 203 58.1
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.5e-53 213.8 203 58.1
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 2.6e-53 213.0 260 50.8
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 3.4e-53 212.6 203 58.1
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 3.4e-53 212.6 256 48.4
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 7.6e-53 211.5 262 51.1
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 7.6e-53 211.5 257 48.6
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 9.9e-53 211.1 257 47.5
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 9.9e-53 211.1 214 52.8
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 2.2e-52 209.9 259 47.9
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 2.2e-52 209.9 257 48.6
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 2.2e-52 209.9 259 47.5
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 2.9e-52 209.5 214 54.7
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 8.4e-52 208.0 257 49.0
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 1.1e-51 207.6 259 47.1
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 1.1e-51 207.6 257 49.4
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.4e-51 207.2 257 47.1
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.9e-51 206.8 259 47.9
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 2.4e-51 206.5 215 54.0
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 2.4e-51 206.5 259 47.1
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 4.1e-51 205.7 203 57.6
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 4.1e-51 205.7 259 49.4
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 5.4e-51 205.3 203 57.1
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 7.1e-51 204.9 259 46.7
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 7.1e-51 204.9 257 47.1
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 9.2e-51 204.5 263 46.0
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 1.2e-50 204.1 260 46.9
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 1.2e-50 204.1 262 46.6
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 1.6e-50 203.8 259 46.3
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 1.6e-50 203.8 259 46.7
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 2.1e-50 203.4 259 46.3
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 2.1e-50 203.4 214 52.3
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 2.1e-50 203.4 260 47.3
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 2.7e-50 203.0 256 47.3
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 2.7e-50 203.0 257 47.5
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 2.7e-50 203.0 258 47.7
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 6.0e-50 201.8 259 46.3
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 7.8e-50 201.4 259 47.5
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 1.0e-49 201.1 261 48.7
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 1.0e-49 201.1 261 48.7
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 1.0e-49 201.1 261 48.7
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 1.0e-49 201.1 257 47.1
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 2.3e-49 199.9 257 46.7
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 3.0e-49 199.5 260 47.3
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 3.0e-49 199.5 257 47.5
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 3.9e-49 199.1 260 46.9
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 8.6e-49 198.0 260 46.5
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 8.6e-49 198.0 260 46.9
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.1e-48 197.6 260 45.8
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 1.1e-48 197.6 260 46.2
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.1e-48 197.6 258 45.7
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.1e-48 197.6 260 46.9
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 1.1e-48 197.6 203 55.7
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 1.5e-48 197.2 260 45.8
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 1.5e-48 197.2 263 47.1
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 1.9e-48 196.8 262 46.2
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.9e-48 196.8 257 48.6
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 3.3e-48 196.1 262 46.9
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 4.3e-48 195.7 261 46.0
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 4.3e-48 195.7 260 47.7
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 5.6e-48 195.3 260 47.7
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 5.6e-48 195.3 260 47.7
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 5.6e-48 195.3 260 47.7
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 5.6e-48 195.3 257 45.1
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 5.6e-48 195.3 257 46.7
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 1.2e-47 194.1 252 47.2
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 1.2e-47 194.1 253 47.4
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.2e-47 194.1 260 46.2
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 1.6e-47 193.7 257 47.9
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.6e-47 193.7 257 47.5
RcHm_v2.0_Chr7g0239601 Rosa chinensis HOM05D003293 ORTHO05D013446 1.6e-47 193.7 236 49.2
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 2.8e-47 193.0 260 47.3
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 2.8e-47 193.0 258 46.5
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 3.6e-47 192.6 252 46.8
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 3.6e-47 192.6 258 46.9
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 6.2e-47 191.8 258 48.1
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 8.1e-47 191.4 262 46.9
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 1.1e-46 191.0 256 46.5
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 1.1e-46 191.0 258 46.5
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 1.4e-46 190.7 257 46.3
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 1.8e-46 190.3 214 49.5
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 4.0e-46 189.1 262 45.8
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 6.8e-46 188.3 257 46.7
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 1.2e-45 187.6 262 43.5
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 2.6e-45 186.4 258 46.9
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 9.9e-45 184.5 255 46.3
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 2.9e-44 183.0 259 45.2
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 4.9e-44 182.2 260 45.0
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 8.4e-44 181.4 257 44.7
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 1.1e-43 181.0 257 44.0
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 1.9e-43 180.3 254 44.9
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 2.4e-43 179.9 259 42.5
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 3.5e-42 176.0 261 44.4
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 7.8e-42 174.9 257 42.4
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 1.3e-41 174.1 240 47.1
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 3.9e-41 172.6 257 41.6
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 6.6e-41 171.8 257 42.0
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 4.3e-40 169.1 221 46.6
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 4.3e-40 169.1 261 41.4
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 9.6e-40 167.9 260 44.2
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 1.3e-39 167.5 210 48.6
RcHm_v2.0_Chr6g0267731 Rosa chinensis HOM05D003293 ORTHO05D013446 1.6e-39 167.2 166 59.0
RcHm_v2.0_Chr4g0408151 Rosa chinensis HOM05D003293 ORTHO05D013446 2.1e-39 166.8 168 58.9
RcHm_v2.0_Chr5g0022661 Rosa chinensis HOM05D003293 ORTHO05D013446 8.1e-39 164.9 166 58.4
RcHm_v2.0_Chr2g0110561 Rosa chinensis HOM05D003293 ORTHO05D013446 3.1e-38 162.9 165 58.2
Eucgr.L02511 Eucalyptus grandis HOM05D003293 ORTHO05D005060 5.3e-38 162.2 117 70.9
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 6.9e-38 161.8 259 42.1
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 9.0e-38 161.4 253 41.1
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 2.6e-37 159.8 165 53.9
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 9.9e-37 157.9 236 43.6
Rhsim10G0161300 Rhododendron simsii HOM05D003293 ORTHO05D005060 1.7e-36 157.1 116 70.7
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 2.2e-36 156.8 124 67.7
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 2.9e-36 156.4 206 44.7
HPP92_020646 Vanilla planifolia HOM05D003293 ORTHO05D005060 2.9e-36 156.4 130 61.5
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 6.4e-36 155.2 202 45.5
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 1.4e-35 154.1 204 44.6
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 3.2e-35 152.9 215 43.3
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 5.4e-35 152.1 215 42.8
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 1.6e-34 150.6 206 45.1
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 3.5e-34 149.4 202 44.1
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 7.9e-34 148.3 124 60.5
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 1.7e-33 147.1 185 46.5
Pp3c1_34170 Physcomitrium patens HOM05D003293 ORTHO05D005060 6.6e-33 145.2 147 53.7
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 7.3e-32 141.7 204 43.1
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 9.6e-32 141.4 124 59.7
ATR0810G033 Amborella trichopoda HOM05D003293 ORTHO05D005060 1.3e-31 141.0 98 75.5
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 1.1e-30 137.9 103 67.0
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 3.1e-30 136.3 202 41.6
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 2.6e-29 133.3 225 40.9
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 9.3e-27 124.8 96 65.6
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 2.1e-26 123.6 116 56.9
RcHm_v2.0_Chr5g0023571 Rosa chinensis HOM05D003293 ORTHO05D022248 1.9e-24 117.1 128 54.7
arahy.Tifrunner.gnm1.ann1.K3F60Q Arachis hypogaea HOM05D003293 ORTHO05D005060 6.5e-20 102.1 75 70.7
RcHm_v2.0_Chr5g0023561 Rosa chinensis HOM05D003293 ORTHO05D005060 5.5e-19 99.0 58 86.2
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 6.0e-18 95.5 205 33.7
Zm00001eb213620 Zea mays HOM05D003293 ORTHO05D005060 1.6e-15 87.4 58 70.7
arahy.Tifrunner.gnm1.ann1.59CN8W Arachis hypogaea HOM05D003293 ORTHO05D005060 2.8e-15 86.7 58 74.1
Haze_27383 Corylus avellana HOM05D003293 ORTHO05D044783 1.4e-14 84.3 95 44.2
Pp3s32_230 Physcomitrium patens HOM05D003293 ORTHO05D309919 9.0e-14 81.6 101 42.6
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 2.2e-12 77.0 55 69.1
Aqoxy7G02401 Aquilegia oxysepala HOM05D003293 ORTHO05D013446 2.9e-12 76.6 50 70.0
Gohir.D13G220550 Gossypium hirsutum HOM05D003293 ORTHO05D022137 4.6e-10 69.3 43 79.1
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 3.0e-09 66.6 43 76.7
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 8.7e-09 65.1 45 68.9
Nn2g15377 Nelumbo nucifera HOM05D003293 ORTHO05D005060 5.7e-08 62.4 44 70.5
QL08p009748 Quercus lobata HOM05D003293 ORTHO05D022248 4.8e-07 59.3 106 38.7


User provided reference genes

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