Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 2.4e-182 642.1 346 100.0
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 6.7e-140 501.1 345 78.8
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 5.9e-120 434.9 346 69.4
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 7.0e-105 384.8 348 64.4
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.6e-104 383.6 346 65.0
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 1.3e-98 364.0 349 61.9
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 7.5e-91 338.2 344 56.7
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 7.0e-89 331.6 374 53.5
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 4.0e-84 315.8 331 55.0
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.2e-83 314.3 372 50.8
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.3e-82 310.8 372 50.5
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.3e-78 295.8 338 52.7
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.8e-77 293.1 338 52.4
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 3.6e-69 266.2 352 47.7
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 1.5e-67 260.8 340 47.4
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.9e-66 256.5 344 45.9
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 6.4e-66 255.4 339 47.2
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 2.1e-64 250.4 330 47.3
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 7.8e-64 248.4 314 45.5
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 5.1e-63 245.7 345 44.6
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 8.6e-63 245.0 372 43.8
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 2.5e-62 243.4 338 44.1
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.5e-62 243.4 339 45.1
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 1.6e-61 240.7 346 42.2
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 2.4e-60 236.9 354 42.4
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 6.8e-60 235.3 354 41.2
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 1.2e-59 234.6 323 45.5
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 1.5e-59 234.2 316 42.1
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 1.5e-59 234.2 316 42.1
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 1.5e-59 234.2 354 40.7
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 2.0e-59 233.8 347 42.9
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 2.6e-59 233.4 345 43.8
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 3.4e-59 233.0 199 73.4
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 5.8e-59 232.3 344 43.0
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.3e-58 231.1 345 43.5
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 3.8e-58 229.6 354 39.8
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 2.4e-57 226.9 341 42.5
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.2e-57 226.1 254 52.0
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 5.4e-57 225.7 345 42.9
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 9.2e-57 224.9 345 41.2
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 1.7e-55 220.7 355 40.8
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.0e-55 219.9 301 44.5
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 3.3e-54 216.5 373 38.9
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.6e-54 215.7 239 52.7
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 1.2e-53 214.5 351 39.3
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 3.6e-53 213.0 353 41.6
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 1.4e-52 211.1 298 43.3
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 1.4e-52 211.1 221 53.8
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 6.9e-52 208.8 343 41.1
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 5.8e-51 205.7 337 38.9
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 1.9e-49 200.7 337 38.0
RcHm_v2.0_Chr7g0228281 Rosa chinensis HOM05D003900 ORTHO05D005009 4.2e-49 199.5 115 88.7
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 9.3e-49 198.4 361 39.6
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 7.8e-48 195.3 185 60.5
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 1.3e-47 194.5 349 38.1
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 3.0e-47 193.4 305 40.0
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 6.6e-47 192.2 340 38.5
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 5.6e-46 189.1 332 36.4
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 9.6e-46 188.3 341 37.0
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 2.1e-45 187.2 335 38.5
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 2.1e-45 187.2 344 37.8
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.8e-45 186.8 306 37.9
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 3.6e-45 186.4 346 37.6
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 8.1e-45 185.3 332 35.5
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 1.1e-44 184.9 335 38.5
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 1.8e-44 184.1 306 37.9
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 1.8e-44 184.1 335 36.4
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 4.0e-44 183.0 332 36.4
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 5.3e-44 182.6 306 37.3
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 5.3e-44 182.6 306 37.3
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 6.9e-44 182.2 330 37.6
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 9.0e-44 181.8 339 35.4
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 1.2e-43 181.4 337 36.2
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 1.5e-43 181.0 336 37.5
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 2.0e-43 180.6 351 37.3
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 2.6e-43 180.3 299 37.1
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 3.4e-43 179.9 334 35.6
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 1.7e-42 177.6 306 36.6
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 3.8e-42 176.4 324 35.2
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 3.8e-42 176.4 299 36.8
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 3.8e-42 176.4 331 36.3
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 4.9e-42 176.0 337 38.0
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 5.4e-41 172.6 288 36.5
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 7.1e-41 172.2 326 35.6
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 7.1e-41 172.2 326 35.6
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 1.6e-40 171.0 368 34.0
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 1.6e-40 171.0 332 34.9
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 2.1e-40 170.6 323 38.1
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 2.1e-40 170.6 338 34.9
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 3.5e-40 169.9 306 36.9
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 4.6e-40 169.5 334 35.3
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 4.6e-40 169.5 306 36.9
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 6.0e-40 169.1 281 37.0
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 1.3e-39 167.9 333 35.4
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 1.3e-39 167.9 324 36.4
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 6.7e-39 165.6 330 33.9
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 1.1e-38 164.9 338 35.2
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 1.9e-38 164.1 368 32.9
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 4.0e-36 156.4 330 33.3
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 1.2e-35 154.8 331 31.7
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 2.2e-34 150.6 204 44.6
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 2.9e-34 150.2 197 43.7
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 6.4e-34 149.1 193 45.1
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 8.4e-34 148.7 356 32.9
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 3.5e-32 143.3 204 43.6
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 4.6e-32 142.9 209 41.6
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 7.9e-32 142.1 200 41.5
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 1.0e-31 141.7 308 31.5
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 2.3e-31 140.6 193 41.5
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 7.4e-30 135.6 193 42.5
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 1.6e-29 134.4 200 41.0
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 4.8e-29 132.9 215 34.4
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 1.8e-28 131.0 80 83.8
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 3.4e-27 126.7 213 33.3
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 7.6e-27 125.6 188 38.8
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 2.2e-26 124.0 196 38.3
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 2.9e-26 123.6 450 26.0
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.6e-24 117.9 80 76.2
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 1.3e-23 114.8 249 31.3
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 1.5e-22 111.3 205 33.7
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 1.7e-18 97.8 282 26.2
Ca_17228_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005009 2.5e-17 94.0 198 34.8
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 3.2e-17 93.6 143 37.8
HPP92_011504 Vanilla planifolia HOM05D003900 ORTHO05D005009 1.2e-16 91.7 347 28.0
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 2.1e-16 90.9 256 27.3
FAN08G3007 Fragaria x ananassa HOM05D003900 ORTHO05D005009 3.0e-15 87.0 51 88.2
VMungo0251G0997 Vigna mungo HOM05D003900 ORTHO05D005009 9.7e-14 82.0 167 33.5
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 2.2e-13 80.9 155 36.1
CAN.G430.2 Capsicum annuum HOM05D003900 ORTHO05D005009 4.8e-13 79.7 117 39.3
CAN.G1005.1 Capsicum annuum HOM05D003900 ORTHO05D005009 2.6e-11 73.9 101 41.6
VMungo1309G0982 Vigna mungo HOM05D003900 ORTHO05D005009 3.2e-09 67.0 87 44.8
CARHR141380 Cardamine hirsuta HOM05D003900 ORTHO05D005009 4.2e-09 66.6 68 51.5
Zm00001eb280170 Zea mays HOM05D003900 ORTHO05D005009 1.6e-08 64.7 59 50.8
VMungo1127G1354 Vigna mungo HOM05D003900 ORTHO05D005009 7.9e-08 62.4 202 29.7
CsaV3_4G037400 Cucumis sativus L. HOM05D006218 ORTHO05D007338 5.1e-07 59.7 187 23.0
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 5.1e-07 59.7 194 30.9
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 8.8e-07 58.9 208 27.4
CAN.G460.4 Capsicum annuum HOM05D003900 ORTHO05D005009 2.0e-06 57.8 88 33.0
TPR.G4127 Trifolium pratense HOM05D007202 ORTHO05D009125 5.7e-06 56.2 202 24.3
ECA234G3939 Erigeron canadensis HOM05D007570 ORTHO05D009365 9.7e-06 55.5 187 23.5


User provided reference genes

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