Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0468491 Rosa chinensis HOM05D000138 ORTHO05D000078 1.0e-60 236.5 114 100.0
FvH4_6g15180 Fragaria vesca HOM05D000138 ORTHO05D000078 3.6e-50 201.4 114 86.0
FAN14G1177 Fragaria x ananassa HOM05D000138 ORTHO05D000078 4.0e-49 198.0 115 86.1
FAN05G5129 Fragaria x ananassa HOM05D000138 ORTHO05D000078 8.9e-49 196.8 115 85.2
FAN02G4371 Fragaria x ananassa HOM05D000138 ORTHO05D000078 3.4e-48 194.9 114 84.2
MD04G1105200 Malus domestica HOM05D000138 ORTHO05D000078 3.6e-42 174.9 115 73.9
Prupe.6G242400 Prunus persica HOM05D000138 ORTHO05D000078 1.9e-38 162.5 116 71.6
MD12G1125900 Malus domestica HOM05D000138 ORTHO05D000078 1.0e-36 156.8 110 70.0
Dinv37243 Davidia involucrata HOM05D000138 ORTHO05D000078 6.0e-21 104.4 118 49.2
Manes.09G079918 Manihot esculenta HOM05D000138 ORTHO05D000078 7.8e-21 104.0 117 51.3
Manes.09G080100 Manihot esculenta HOM05D000138 ORTHO05D000078 7.8e-21 104.0 117 51.3
Potri.016G084500 Populus trichocarpa HOM05D000138 ORTHO05D000078 1.0e-20 103.6 118 49.2
Thecc.05G052900 Theobroma cacao HOM05D000138 ORTHO05D000078 1.7e-20 102.8 117 52.1
arahy.Tifrunner.gnm1.ann1.38RLY4 Arachis hypogaea HOM05D000138 ORTHO05D000078 7.3e-19 97.4 104 51.0
Psat3g046960 Pisum sativum HOM05D000138 ORTHO05D000078 2.8e-18 95.5 119 47.1
GSVIVG01025548001 Vitis vinifera HOM05D000138 ORTHO05D000078 2.8e-18 95.5 112 49.1
TPR.G36969 Trifolium pratense HOM05D000138 ORTHO05D000078 3.6e-18 95.1 119 48.7
Lalb_Chr25g0289271 Lupinus albus HOM05D000138 ORTHO05D000078 4.8e-18 94.7 116 47.4
Haze_20664 Corylus avellana HOM05D000138 ORTHO05D000078 2.4e-17 92.4 103 51.5
Potri.006G132400 Populus trichocarpa HOM05D000138 ORTHO05D000078 2.4e-17 92.4 118 47.5
arahy.Tifrunner.gnm1.ann1.MRL478 Arachis hypogaea HOM05D000138 ORTHO05D000078 4.0e-17 91.7 104 48.1
Sabra16G0091400 Salix brachista HOM05D000138 ORTHO05D000078 9.0e-17 90.5 119 47.9
Cfa017498 Carpinus fangiana HOM05D000138 ORTHO05D000078 1.5e-16 89.7 110 50.9
Duzib128G2027 Durio zibethinus HOM05D000138 ORTHO05D000078 1.5e-16 89.7 116 48.3
CSS0004391 Camellia sinensis var. sinensis HOM05D000138 ORTHO05D000078 2.0e-16 89.4 117 45.3
Medtr7g100590 Medicago truncatula HOM05D000138 ORTHO05D000078 2.0e-16 89.4 118 45.8
Phvul.001G174400 Phaseolus vulgaris HOM05D000138 ORTHO05D000078 2.6e-16 89.0 107 47.7
ClCG04G008810 Citrullus lanatus HOM05D000138 ORTHO05D000078 4.5e-16 88.2 110 48.2
Glyma.03G177500 Glycine max HOM05D000138 ORTHO05D000078 5.8e-16 87.8 110 49.1
Atru.chr8.2547 Acer truncatum HOM05D000138 ORTHO05D000078 7.6e-16 87.4 116 45.7
MELO3C014261.2 Cucumis melo HOM05D000138 ORTHO05D000078 7.6e-16 87.4 111 45.9
QL07p045433 Quercus lobata HOM05D000138 ORTHO05D000078 9.9e-16 87.0 109 47.7
VMungo1383G0320 Vigna mungo HOM05D000138 ORTHO05D000078 1.3e-15 86.7 80 56.2
Gohir.D01G206600 Gossypium hirsutum HOM05D000138 ORTHO05D000078 1.7e-15 86.3 115 46.1
Gorai.002G251500 Gossypium raimondii HOM05D000138 ORTHO05D000078 1.7e-15 86.3 115 46.1
Ca_08819_v3 Cicer arietinum L. HOM05D000138 ORTHO05D000078 2.9e-15 85.5 88 56.8
CsaV3_4G024330 Cucumis sativus L. HOM05D000138 ORTHO05D000078 4.9e-15 84.7 113 46.0
Duzib093G1073 Durio zibethinus HOM05D000138 ORTHO05D000078 4.9e-15 84.7 116 44.8
CiPaw.09G180900 Carya illinoinensis HOM05D000138 ORTHO05D000078 6.4e-15 84.3 111 46.8
Glyma.19G178200 Glycine max HOM05D000138 ORTHO05D000078 6.4e-15 84.3 107 47.7
Gohir.A01G217700 Gossypium hirsutum HOM05D000138 ORTHO05D000078 8.4e-15 84.0 115 45.2
vmacro08690 Vaccinium macrocarpon HOM05D000138 ORTHO05D000078 8.4e-15 84.0 107 45.8
Actinidia05276 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.2e-13 80.1 104 45.2
Nitab4.5_0006152g0040 Nicotiana tabacum HOM05D000138 ORTHO05D000078 1.0e-12 77.0 115 44.3
Nn2g12971 Nelumbo nucifera HOM05D000138 ORTHO05D000078 1.3e-12 76.6 114 43.0
Nitab4.5_0000848g0220 Nicotiana tabacum HOM05D000138 ORTHO05D000078 1.3e-12 76.6 115 43.5
Hund20152 Selenicereus undatus HOM05D000138 ORTHO05D000078 1.8e-12 76.3 91 47.3
Lj2A106T34 Lonicera japonica HOM05D000138 ORTHO05D000078 2.3e-12 75.9 76 53.9
Peaxi162Scf00005g00506 Petunia axillaris HOM05D000138 ORTHO05D000078 2.3e-12 75.9 117 41.9
Sed0003820 Sechium edule HOM05D000138 ORTHO05D000078 5.1e-12 74.7 97 45.4
Ciclev10011588m.g Citrus clementina HOM05D000138 ORTHO05D000078 8.7e-12 73.9 106 42.5
TAR633G2276 Trochodendron aralioides HOM05D000138 ORTHO05D000078 1.1e-11 73.6 110 40.0
Sabra06G0103800 Salix brachista HOM05D000138 ORTHO05D000078 1.9e-11 72.8 115 40.0
DCAR_009289 Daucus carota HOM05D000138 ORTHO05D000078 1.3e-10 70.1 114 38.6
Cpa.g.sc114.55 Carica papaya HOM05D000138 ORTHO05D000078 1.6e-10 69.7 74 54.1
Sopen09g002130 Solanum pennellii HOM05D000138 ORTHO05D000078 1.6e-10 69.7 115 40.0
Sopen09g002150 Solanum pennellii HOM05D000138 ORTHO05D000078 1.6e-10 69.7 115 40.0
Solyc09g007260.4 Solanum lycopersicum HOM05D000138 ORTHO05D000078 2.1e-10 69.3 115 39.1
PGSC0003DMG400027904 Solanum tuberosum HOM05D000138 ORTHO05D000078 2.1e-10 69.3 115 40.9
Ah.15g092060 Amaranthus hybridus HOM05D000138 ORTHO05D000078 2.8e-10 68.9 87 42.5
QL01p035865 Quercus lobata HOM05D000138 ORTHO05D000078 3.6e-10 68.6 109 42.2
Dinv11817 Davidia involucrata HOM05D000138 ORTHO05D000078 4.8e-10 68.2 114 43.0
TAR636G0276 Trochodendron aralioides HOM05D000138 ORTHO05D000078 6.2e-10 67.8 72 51.4
FvH4_3g33940 Fragaria vesca HOM05D000138 ORTHO05D000078 8.1e-10 67.4 105 43.8
CAN.G350.39 Capsicum annuum HOM05D000138 ORTHO05D000078 1.1e-09 67.0 116 37.9
TWI53G1154 Tripterygium wilfordii HOM05D000138 ORTHO05D000078 1.1e-09 67.0 85 47.1
TAR623G1691 Trochodendron aralioides HOM05D000138 ORTHO05D000078 1.1e-09 67.0 72 48.6
TAR369G0541 Trochodendron aralioides HOM05D000138 ORTHO05D000078 1.8e-09 66.2 69 49.3
FAN11G1484 Fragaria x ananassa HOM05D000138 ORTHO05D000078 3.1e-09 65.5 105 42.9
FAN16G3281 Fragaria x ananassa HOM05D000138 ORTHO05D000078 3.1e-09 65.5 99 44.4
Hma1.2p1_0958F.1_g241520 Hydrangea macrophylla HOM05D000138 ORTHO05D000078 3.1e-09 65.5 103 44.7
Aqoxy4G03170 Aquilegia oxysepala HOM05D000138 ORTHO05D000078 4.0e-09 65.1 107 38.3
Nn2g10630 Nelumbo nucifera HOM05D000138 ORTHO05D000078 4.0e-09 65.1 113 37.2
Manes.04G027000 Manihot esculenta HOM05D000138 ORTHO05D000078 5.3e-09 64.7 114 42.1
CsaV3_3G035470 Cucumis sativus L. HOM05D000138 ORTHO05D000078 6.9e-09 64.3 123 37.4
Cpa.g.sc139.43 Carica papaya HOM05D000138 ORTHO05D000078 9.0e-09 63.9 84 47.6
FAN25G3461 Fragaria x ananassa HOM05D000138 ORTHO05D000078 9.0e-09 63.9 99 42.4
Duzib114G0178 Durio zibethinus HOM05D000138 ORTHO05D000078 1.5e-08 63.2 81 46.9
COL.COLO4_27093 Corchorus olitorius HOM05D000138 ORTHO05D000078 2.0e-08 62.8 116 37.1
FAN21G2106 Fragaria x ananassa HOM05D000138 ORTHO05D000078 3.4e-08 62.0 99 43.4
RcHm_v2.0_Chr5g0061491 Rosa chinensis HOM05D000138 ORTHO05D000078 3.4e-08 62.0 98 40.8
Sed0009007 Sechium edule HOM05D000138 ORTHO05D000078 3.4e-08 62.0 109 40.4
MD11G1121200 Malus domestica HOM05D000138 ORTHO05D000078 4.5e-08 61.6 94 41.5
DCAR_017724 Daucus carota HOM05D000138 ORTHO05D000078 5.8e-08 61.2 112 35.7
Hma1.2p1_1870F.1_g306080 Hydrangea macrophylla HOM05D000138 ORTHO05D000078 5.8e-08 61.2 89 44.9
CSS0013012 Camellia sinensis var. sinensis HOM05D000138 ORTHO05D000078 7.6e-08 60.8 110 37.3
Glyma.11G149825 Glycine max HOM05D000138 ORTHO05D000078 9.9e-08 60.5 99 47.5
Glyma.12G073300 Glycine max HOM05D000138 ORTHO05D000078 9.9e-08 60.5 98 43.9
Manes.11G139300 Manihot esculenta HOM05D000138 ORTHO05D000078 9.9e-08 60.5 111 37.8
Sed0000924 Sechium edule HOM05D000138 ORTHO05D000078 9.9e-08 60.5 95 42.1
TWI77G0997 Tripterygium wilfordii HOM05D000138 ORTHO05D000078 1.3e-07 60.1 110 39.1
CiPaw.14G076000 Carya illinoinensis HOM05D000138 ORTHO05D000078 1.7e-07 59.7 110 39.1
PGSC0003DMG400011046 Solanum tuberosum HOM05D000138 ORTHO05D000078 1.7e-07 59.7 112 39.3
GSVIVG01025100001 Vitis vinifera HOM05D000138 ORTHO05D000078 1.7e-07 59.7 70 50.0
MELO3C025726.2 Cucumis melo HOM05D000138 ORTHO05D000078 2.9e-07 58.9 95 40.0
CsaV3_6G021830 Cucumis sativus L. HOM05D000138 ORTHO05D000078 2.9e-07 58.9 95 40.0
GSVIVG01016352001 Vitis vinifera HOM05D000138 ORTHO05D000078 3.8e-07 58.5 113 41.6
ClCG02G020780 Citrullus lanatus HOM05D000138 ORTHO05D000078 6.4e-07 57.8 95 38.9
Actinidia03019 Actinidia chinensis HOM05D000138 ORTHO05D000078 8.4e-07 57.4 107 34.6
DCAR_002494 Daucus carota HOM05D000138 ORTHO05D000078 8.4e-07 57.4 81 38.3
Prupe.6G091100 Prunus persica HOM05D000138 ORTHO05D000078 8.4e-07 57.4 86 45.3
CSS0041049 Camellia sinensis var. sinensis HOM05D000138 ORTHO05D000078 1.1e-06 57.0 93 46.2
Duzib128G0870 Durio zibethinus HOM05D000138 ORTHO05D000078 1.1e-06 57.0 85 44.7
Eucgr.A01182 Eucalyptus grandis HOM05D000138 ORTHO05D000078 1.1e-06 57.0 73 42.5
Peaxi162Scf00389g00028 Petunia axillaris HOM05D000138 ORTHO05D000078 1.1e-06 57.0 108 40.7
COL.COLO4_23762 Corchorus olitorius HOM05D000138 ORTHO05D000078 1.9e-06 56.2 107 41.1
Thecc.10G066100 Theobroma cacao HOM05D000138 ORTHO05D000078 1.9e-06 56.2 113 37.2
Rhsim13G0090400 Rhododendron simsii HOM05D000138 ORTHO05D000078 2.4e-06 55.8 108 36.1
RhsimUnG0139000 Rhododendron simsii HOM05D000138 ORTHO05D000078 2.4e-06 55.8 108 36.1
Dinv31370 Davidia involucrata HOM05D000138 ORTHO05D000078 4.2e-06 55.1 116 37.9
FAN09G1450 Fragaria x ananassa HOM05D000138 ORTHO05D000078 4.2e-06 55.1 31 80.6
MD03G1107900 Malus domestica HOM05D000138 ORTHO05D000078 4.2e-06 55.1 92 39.1
TPR.G11557 Trifolium pratense HOM05D000138 ORTHO05D000078 5.5e-06 54.7 105 39.0
Hma1.2p1_1731F.1_g299760 Hydrangea macrophylla HOM05D000138 ORTHO05D000078 7.1e-06 54.3 90 45.6
Lj3g0016040 Lotus japonicus HOM05D000138 ORTHO05D000078 7.1e-06 54.3 96 42.7
Actinidia03756 Actinidia chinensis HOM05D000138 ORTHO05D000078 9.3e-06 53.9 106 37.7
CiPaw.13G104700 Carya illinoinensis HOM05D000138 ORTHO05D000078 9.3e-06 53.9 113 39.8


User provided reference genes

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