Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 4.4e-39 164.1 78 100.0
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 1.2e-33 146.0 74 91.9
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 1.0e-32 142.9 74 91.9
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.0e-32 142.9 74 91.9
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.0e-32 142.9 74 91.9
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.4e-32 142.5 74 91.9
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 2.2e-27 125.2 74 82.4
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 1.5e-26 122.5 74 79.7
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 2.8e-22 108.2 74 67.6
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 8.3e-22 106.7 74 64.9
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 1.1e-21 106.3 74 66.2
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 2.4e-21 105.1 74 66.2
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 2.4e-21 105.1 74 66.2
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 3.1e-21 104.8 74 66.2
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 4.1e-21 104.4 74 64.9
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 5.4e-21 104.0 74 64.9
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 1.6e-20 102.4 74 64.9
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 1.6e-20 102.4 74 64.9
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 1.6e-20 102.4 74 63.5
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 1.6e-20 102.4 74 64.9
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 3.5e-20 101.3 74 63.5
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 3.5e-20 101.3 74 63.5
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 5.9e-20 100.5 74 63.5
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 5.9e-20 100.5 74 63.5
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 7.7e-20 100.1 74 62.2
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 1.0e-19 99.8 74 60.8
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 1.7e-19 99.0 74 62.2
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 1.7e-19 99.0 75 64.0
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 2.3e-19 98.6 74 59.5
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 2.3e-19 98.6 74 60.8
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 3.8e-19 97.8 74 60.8
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 1.1e-18 96.3 74 66.2
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 1.5e-18 95.9 74 56.8
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 1.5e-18 95.9 74 60.8
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 1.5e-18 95.9 74 58.1
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 2.5e-18 95.1 74 60.8
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 3.3e-18 94.7 74 60.8
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 3.3e-18 94.7 74 60.8
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 3.3e-18 94.7 74 60.8
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 3.3e-18 94.7 74 60.8
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 3.3e-18 94.7 74 56.8
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 3.3e-18 94.7 74 59.5
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 4.2e-18 94.4 74 59.5
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 4.2e-18 94.4 74 59.5
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 5.5e-18 94.0 74 58.1
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 7.2e-18 93.6 74 56.8
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 7.2e-18 93.6 74 62.2
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 9.5e-18 93.2 74 59.5
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.6e-17 92.4 76 57.9
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 2.8e-17 91.7 74 54.1
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 2.8e-17 91.7 74 56.8
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 3.6e-17 91.3 74 58.1
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 8.0e-17 90.1 74 60.8
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.0e-16 89.7 74 54.1
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.0e-16 89.7 74 54.1
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.4e-16 89.4 74 56.8
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 1.8e-16 89.0 74 55.4
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 1.8e-16 89.0 74 58.1
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 3.0e-16 88.2 74 58.1
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 4.0e-16 87.8 76 56.6
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 5.2e-16 87.4 77 61.0
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 5.2e-16 87.4 74 59.5
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 6.8e-16 87.0 74 52.7
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 8.9e-16 86.7 74 56.8
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 8.9e-16 86.7 74 56.8
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 8.9e-16 86.7 74 56.8
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 8.9e-16 86.7 74 54.1
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 8.9e-16 86.7 74 56.8
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 1.2e-15 86.3 74 59.5
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 2.6e-15 85.1 74 54.1
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 2.6e-15 85.1 77 57.1
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 3.4e-15 84.7 74 56.8
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 3.4e-15 84.7 74 51.4
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 3.4e-15 84.7 76 56.6
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 3.4e-15 84.7 74 54.1
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 4.4e-15 84.3 74 50.0
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 5.7e-15 84.0 74 50.0
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 7.5e-15 83.6 74 58.1
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 9.8e-15 83.2 78 52.6
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 1.3e-14 82.8 74 54.1
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 1.7e-14 82.4 74 47.3
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 1.7e-14 82.4 77 51.9
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 2.2e-14 82.0 74 55.4
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 4.9e-14 80.9 74 58.1
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.8e-13 79.0 74 55.4
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 1.6e-12 75.9 78 50.0
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 3.5e-12 74.7 76 50.0
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 4.6e-12 74.3 74 51.4
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 4.6e-12 74.3 75 53.3
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 1.3e-11 72.8 69 50.7
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 2.3e-11 72.0 76 48.7
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 1.8e-08 62.4 74 43.2
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 3.4e-07 58.2 75 38.7
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 3.4e-07 58.2 76 40.8
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 4.9e-06 54.3 81 39.5


User provided reference genes

Program Settings