Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 3.5e-102 375.2 219 100.0
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 2.4e-79 299.3 204 85.8
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 8.7e-77 290.8 199 85.4
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 7.4e-76 287.7 199 85.9
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.2e-73 280.4 199 82.9
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.2e-70 270.4 199 82.9
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 1.5e-36 157.1 203 58.1
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 5.3e-26 122.1 195 49.7
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 2.0e-25 120.2 193 47.7
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 5.9e-25 118.6 196 50.5
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 6.5e-24 115.2 204 49.5
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 9.4e-23 111.3 200 50.0
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 1.0e-21 107.8 203 44.3
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.0e-21 107.8 196 43.9
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.8e-21 107.1 200 44.5
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 2.3e-21 106.7 209 41.6
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.2e-21 105.5 206 42.2
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 6.8e-21 105.1 203 48.8
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.5e-20 104.0 242 35.1
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 3.4e-20 102.8 200 45.5
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 7.5e-20 101.7 237 37.6
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 2.2e-19 100.1 86 70.9
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 2.8e-19 99.8 97 59.8
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.8e-19 99.8 96 61.5
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 3.7e-19 99.4 120 53.3
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 6.3e-19 98.6 196 44.9
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 8.3e-19 98.2 200 44.5
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.8e-18 97.1 203 41.4
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.4e-18 96.7 95 64.2
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 3.1e-18 96.3 152 47.4
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 3.1e-18 96.3 176 44.9
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 4.1e-18 95.9 203 40.4
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 4.1e-18 95.9 104 59.6
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 4.1e-18 95.9 97 58.8
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 5.4e-18 95.5 197 45.7
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 9.1e-18 94.7 97 55.7
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.6e-17 94.0 196 45.9
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.6e-17 94.0 195 41.5
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.6e-17 94.0 155 47.7
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 3.5e-17 92.8 119 49.6
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.5e-17 92.4 215 37.2
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 1.0e-16 91.3 96 55.2
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 1.3e-16 90.9 96 59.4
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.2e-16 90.1 195 41.5
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 2.2e-16 90.1 138 47.8
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 2.9e-16 89.7 125 51.2
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 3.8e-16 89.4 90 61.1
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 3.8e-16 89.4 205 37.6
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 8.5e-16 88.2 214 37.4
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 8.5e-16 88.2 167 46.7
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.1e-15 87.8 219 36.1
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 1.5e-15 87.4 103 52.4
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 1.5e-15 87.4 83 61.4
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 3.2e-15 86.3 99 55.6
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 4.2e-15 85.9 89 56.2
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 5.5e-15 85.5 190 44.2
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 7.2e-15 85.1 190 37.4
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 9.5e-15 84.7 165 43.0
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.2e-14 84.3 152 44.1
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 2.1e-14 83.6 86 60.5
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 2.8e-14 83.2 172 41.3
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 4.7e-14 82.4 87 56.3
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 4.7e-14 82.4 98 56.1
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 6.1e-14 82.0 197 37.1
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 6.1e-14 82.0 136 41.9
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.4e-13 80.9 234 34.6
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 1.8e-13 80.5 186 37.6
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 2.3e-13 80.1 86 58.1
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 2.3e-13 80.1 68 66.2
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 2.3e-13 80.1 176 40.9
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 5.2e-13 79.0 193 37.3
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 5.2e-13 79.0 95 55.8
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 6.8e-13 78.6 96 50.0
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 8.8e-13 78.2 100 48.0
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 8.8e-13 78.2 190 36.3
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 2.6e-12 76.6 168 39.3
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 2.6e-12 76.6 151 42.4
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 2.6e-12 76.6 110 47.3
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 3.4e-12 76.3 174 38.5
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 3.4e-12 76.3 88 55.7
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 4.4e-12 75.9 158 39.2
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 4.4e-12 75.9 197 39.1
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 4.4e-12 75.9 93 52.7
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 9.8e-12 74.7 86 54.7
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 1.3e-11 74.3 74 56.8
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.3e-11 74.3 86 59.3
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 1.7e-11 73.9 220 39.5
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 2.8e-11 73.2 204 37.3
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.7e-11 72.8 186 36.0
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 4.9e-11 72.4 53 69.8
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 4.9e-11 72.4 178 36.5
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 6.3e-11 72.0 227 37.9
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 6.3e-11 72.0 67 61.2
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 6.3e-11 72.0 182 34.1
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 6.3e-11 72.0 183 37.7
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 8.3e-11 71.6 175 37.7
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 8.3e-11 71.6 175 37.7
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 8.3e-11 71.6 212 35.4
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 1.1e-10 71.2 170 38.2
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 1.1e-10 71.2 56 67.9
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 1.1e-10 71.2 184 39.1
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.8e-10 70.5 82 54.9
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 3.1e-10 69.7 163 41.1
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 4.1e-10 69.3 201 35.8
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 5.4e-10 68.9 179 35.2
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 5.4e-10 68.9 199 34.7
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 7.0e-10 68.6 190 38.9
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 9.2e-10 68.2 168 38.1
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 9.2e-10 68.2 105 41.9
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 1.6e-09 67.4 69 52.2
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 2.0e-09 67.0 185 34.1
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 5.9e-09 65.5 188 34.6
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 7.8e-09 65.1 175 41.1
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 7.8e-09 65.1 185 37.3
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 7.8e-09 65.1 73 53.4
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 1.0e-08 64.7 160 38.8
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.0e-08 64.7 184 37.5
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.0e-08 64.7 197 37.1
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 1.3e-08 64.3 70 51.4
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 1.3e-08 64.3 73 53.4
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 2.3e-08 63.5 70 51.4
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 6.6e-08 62.0 147 43.5
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 6.6e-08 62.0 192 34.4
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.5e-07 60.8 206 32.0
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 4.3e-07 59.3 173 35.8
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 1.6e-06 57.4 192 32.3
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 1.6e-06 57.4 150 34.7
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 8.0e-06 55.1 169 40.2


User provided reference genes

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