Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0468051 Rosa chinensis HOM05D005959 ORTHO05D007263 2.6e-156 555.4 302 100.0
FAN02G2849 Fragaria x ananassa HOM05D005959 ORTHO05D007263 5.8e-148 527.7 307 95.1
FAN14G3394 Fragaria x ananassa HOM05D005959 ORTHO05D007263 2.9e-147 525.4 307 94.5
Prupe.6G245600 Prunus persica HOM05D005959 ORTHO05D007263 2.3e-136 489.2 302 88.7
FAN09G4388 Fragaria x ananassa HOM05D005959 ORTHO05D007263 5.7e-135 484.6 265 98.1
FAN05G1034 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.6e-134 483.0 265 98.1
FvH4_6g14820 Fragaria vesca HOM05D005959 ORTHO05D007263 1.4e-133 479.9 307 88.9
MD12G1131100 Malus domestica HOM05D005959 ORTHO05D007263 8.4e-131 470.7 304 84.5
MD04G1110300 Malus domestica HOM05D005959 ORTHO05D007263 7.1e-130 467.6 304 83.2
Potri.016G082100 Populus trichocarpa HOM05D005959 ORTHO05D007263 1.7e-123 446.4 268 86.6
Cfa017467 Carpinus fangiana HOM05D005959 ORTHO05D007263 2.5e-122 442.6 265 88.3
QL07p045958 Quercus lobata HOM05D005959 ORTHO05D007263 4.2e-122 441.8 264 87.5
Potri.006G215700 Populus trichocarpa HOM05D005959 ORTHO05D007263 6.1e-121 438.0 275 84.0
Rhsim05G0184400 Rhododendron simsii HOM05D005959 ORTHO05D007263 6.1e-121 438.0 265 87.2
Ciclev10012473m.g Citrus clementina HOM05D005959 ORTHO05D007263 3.9e-120 435.3 268 84.7
Haze_20691 Corylus avellana HOM05D005959 ORTHO05D007263 5.1e-120 434.9 329 76.3
Hma1.2p1_0111F.1_g053440 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 5.1e-120 434.9 265 84.9
Manes.08G000700 Manihot esculenta HOM05D005959 ORTHO05D007263 1.5e-119 433.3 265 84.9
Peaxi162Scf00009g00079 Petunia axillaris HOM05D005959 ORTHO05D007263 2.5e-119 432.6 265 84.9
CANSAT80G1914 Cannabis sativa HOM05D005959 ORTHO05D007263 3.3e-119 432.2 290 80.3
Glyma.10G047100 Glycine max HOM05D005959 ORTHO05D007263 7.4e-119 431.0 261 87.7
Gohir.D04G117100 Gossypium hirsutum HOM05D005959 ORTHO05D007263 7.4e-119 431.0 265 86.0
MSTRG.26742 Avicennia marina HOM05D005959 ORTHO05D007263 1.3e-118 430.3 265 84.9
Gorai.009G422000 Gossypium raimondii HOM05D005959 ORTHO05D007263 1.3e-118 430.3 265 86.0
Thecc.05G049500 Theobroma cacao HOM05D005959 ORTHO05D007263 4.8e-118 428.3 265 84.2
PGR004G1166 Punica granatum HOM05D005959 ORTHO05D007263 8.2e-118 427.6 263 84.4
PGSC0003DMG400017610 Solanum tuberosum HOM05D005959 ORTHO05D007263 1.1e-117 427.2 265 84.2
Solyc10g085950.2 Solanum lycopersicum HOM05D005959 ORTHO05D007263 1.4e-117 426.8 265 84.2
Eucgr.K03183 Eucalyptus grandis HOM05D005959 ORTHO05D007263 1.8e-117 426.4 261 85.8
Nitab4.5_0000725g0200 Nicotiana tabacum HOM05D005959 ORTHO05D007263 1.8e-117 426.4 265 83.8
TAR623G1105 Trochodendron aralioides HOM05D005959 ORTHO05D007263 1.8e-117 426.4 265 85.7
Duzib106G1538 Durio zibethinus HOM05D005959 ORTHO05D007263 2.4e-117 426.0 265 84.5
DCAR_020866 Daucus carota HOM05D005959 ORTHO05D007263 3.1e-117 425.6 265 83.8
TWI74G1319 Tripterygium wilfordii HOM05D005959 ORTHO05D007263 3.1e-117 425.6 265 85.7
Duzib093G0581 Durio zibethinus HOM05D005959 ORTHO05D007263 2.0e-116 422.9 265 83.8
Atru.chr8.2507 Acer truncatum HOM05D005959 ORTHO05D007263 2.6e-116 422.5 265 82.3
Migut.L01643 Erythranthe guttata HOM05D005959 ORTHO05D007263 3.4e-116 422.2 265 82.6
Thhalv10017068m.g Eutrema salsugineum HOM05D005959 ORTHO05D007263 4.5e-116 421.8 262 83.2
SGA_v2.0_scaffold94G28648 Striga asiatica HOM05D005959 ORTHO05D007263 4.5e-116 421.8 265 83.8
Lsat_1_v5_gn_6_33160 Lactuca sativa HOM05D005959 ORTHO05D007263 5.9e-116 421.4 265 83.0
Duzib128G1635 Durio zibethinus HOM05D005959 ORTHO05D007263 7.7e-116 421.0 265 83.0
ATR0594G178 Amborella trichopoda HOM05D005959 ORTHO05D007263 3.8e-115 418.7 265 84.5
Oeu026074.1 Olea europaea HOM05D005959 ORTHO05D007263 3.8e-115 418.7 265 81.5
Lj3A975G71 Lonicera japonica HOM05D005959 ORTHO05D007263 5.0e-115 418.3 265 82.6
EL10Ac7g17275 Beta vulgaris HOM05D005959 ORTHO05D007263 6.5e-115 417.9 265 83.0
Carub.0004s1924 Capsella rubella HOM05D005959 ORTHO05D007263 6.5e-115 417.9 264 82.6
Ca_08807_v3 Cicer arietinum L. HOM05D005959 ORTHO05D007263 8.5e-115 417.5 263 83.7
Cc06_g03270 Coffea canephora HOM05D005959 ORTHO05D007263 8.5e-115 417.5 265 81.5
Glyma.03G175800 Glycine max HOM05D005959 ORTHO05D007263 8.5e-115 417.5 262 82.8
arahy.Tifrunner.gnm1.ann1.R87Y2D Arachis hypogaea HOM05D005959 ORTHO05D007263 1.1e-114 417.2 262 83.2
Phvul.001G172900 Phaseolus vulgaris HOM05D005959 ORTHO05D007263 1.4e-114 416.8 262 82.8
A04p28510 Brassica napus HOM05D005959 ORTHO05D007263 1.9e-114 416.4 259 83.8
BraA04t18329Z Brassica rapa HOM05D005959 ORTHO05D007263 1.9e-114 416.4 259 83.8
Lalb_Chr25g0289351 Lupinus albus HOM05D005959 ORTHO05D007263 1.9e-114 416.4 287 78.4
C04p65830 Brassica napus HOM05D005959 ORTHO05D007263 2.5e-114 416.0 259 83.8
Lj1g0020453 Lotus japonicus HOM05D005959 ORTHO05D007263 2.5e-114 416.0 261 83.1
Psat0s1952g0120 Pisum sativum HOM05D005959 ORTHO05D007263 2.5e-114 416.0 293 77.5
AT2G37330 Arabidopsis thaliana HOM05D005959 ORTHO05D007263 5.5e-114 414.8 264 81.1
arahy.Tifrunner.gnm1.ann1.T45XFJ Arachis hypogaea HOM05D005959 ORTHO05D007263 7.2e-114 414.5 262 82.8
HanXRQChr13g0399331 Helianthus annuus HOM05D005959 ORTHO05D007263 9.4e-114 414.1 265 82.3
TPR.G21452 Trifolium pratense HOM05D005959 ORTHO05D007263 9.4e-114 414.1 263 82.5
Aqoxy2G00899 Aquilegia oxysepala HOM05D005959 ORTHO05D007263 1.2e-113 413.7 259 84.6
BcaC02g07517 Brassica carinata HOM05D005959 ORTHO05D007263 1.6e-113 413.3 259 83.4
BolC4t28086H Brassica oleracea HOM05D005959 ORTHO05D007263 1.6e-113 413.3 259 83.4
AL4G33710 Arabidopsis lyrata HOM05D005959 ORTHO05D007263 2.1e-113 412.9 264 81.1
CARHR132260 Cardamine hirsuta HOM05D005959 ORTHO05D007263 2.7e-113 412.5 264 81.1
Sabra16G0089800 Salix brachista HOM05D005959 ORTHO05D007263 3.6e-113 412.1 268 82.1
CSS0020892 Camellia sinensis var. sinensis HOM05D005959 ORTHO05D007263 4.7e-113 411.8 266 79.3
Sc01g0003780 Simmondsia chinensis HOM05D005959 ORTHO05D007263 6.1e-113 411.4 263 81.7
Sopen10g035320 Solanum pennellii HOM05D005959 ORTHO05D007263 6.1e-113 411.4 253 85.4
Medtr7g100160 Medicago truncatula HOM05D005959 ORTHO05D007263 7.9e-113 411.0 263 82.1
Sp4g19650 Schrenkiella parvula HOM05D005959 ORTHO05D007263 1.0e-112 410.6 262 81.3
Lalb_Chr20g0113031 Lupinus albus HOM05D005959 ORTHO05D007263 1.4e-112 410.2 272 79.0
A05p08590 Brassica napus HOM05D005959 ORTHO05D007263 2.3e-112 409.5 262 81.3
BraA05t19827Z Brassica rapa HOM05D005959 ORTHO05D007263 3.0e-112 409.1 262 80.9
unitig_578.g16043 Utricularia gibba HOM05D005959 ORTHO05D007263 3.0e-112 409.1 265 80.0
CDE07G0433 Ceratophyllum demersum HOM05D005959 ORTHO05D007263 3.9e-112 408.7 274 77.7
Hund12071 Selenicereus undatus HOM05D005959 ORTHO05D007263 3.9e-112 408.7 265 80.4
CsaV3_3G035240 Cucumis sativus L. HOM05D005959 ORTHO05D007263 5.1e-112 408.3 262 80.9
Ah.15g091970 Amaranthus hybridus HOM05D005959 ORTHO05D007263 2.0e-111 406.4 265 80.8
BcaC02g11852 Brassica carinata HOM05D005959 ORTHO05D007263 2.0e-111 406.4 262 80.2
Lj2A103T72 Lonicera japonica HOM05D005959 ORTHO05D007263 2.0e-111 406.4 263 81.0
MBI14_g34528_MAGBIO Magnolia biondii HOM05D005959 ORTHO05D007263 3.3e-111 405.6 254 84.6
C04p10680 Brassica napus HOM05D005959 ORTHO05D007263 4.4e-111 405.2 260 80.4
BolC4t22661H Brassica oleracea HOM05D005959 ORTHO05D007263 4.4e-111 405.2 260 80.4
MELO3C009294.2 Cucumis melo HOM05D005959 ORTHO05D007263 4.4e-111 405.2 262 80.9
ECA233G2168 Erigeron canadensis HOM05D005959 ORTHO05D007263 9.7e-111 404.1 253 84.6
Sed0012545 Sechium edule HOM05D005959 ORTHO05D007263 1.7e-110 403.3 263 79.8
Aa31LG5G22650 Aethionema arabicum HOM05D005959 ORTHO05D007263 3.1e-109 399.1 265 78.1
CAN.G687.19 Capsicum annuum HOM05D005959 ORTHO05D007263 3.5e-108 395.6 241 85.5
THA.LOC104823437 Tarenaya hassleriana HOM05D005959 ORTHO05D007263 3.5e-108 395.6 264 79.5
BcaB02g09288 Brassica carinata HOM05D005959 ORTHO05D007263 4.5e-108 395.2 262 79.0
CiPaw.09G185300 Carya illinoinensis HOM05D005959 ORTHO05D007263 1.3e-107 393.7 225 91.1
PSO339G1263 Papaver somniferum HOM05D005959 ORTHO05D007263 3.8e-107 392.1 259 79.5
vmacro20093 Vaccinium macrocarpon HOM05D005959 ORTHO05D007263 3.8e-107 392.1 287 76.0
HPP92_021201 Vanilla planifolia HOM05D005959 ORTHO05D007263 3.8e-107 392.1 263 77.6
BcaB06g28984 Brassica carinata HOM05D005959 ORTHO05D007263 8.5e-107 391.0 251 81.7
Aa31LG5G22670 Aethionema arabicum HOM05D005959 ORTHO05D007263 5.5e-106 388.3 253 80.2
PSO384G3658 Papaver somniferum HOM05D005959 ORTHO05D007263 9.4e-106 387.5 259 78.4
Gohir.A04G077900 Gossypium hirsutum HOM05D005959 ORTHO05D007263 4.7e-105 385.2 286 75.5
SEGI_41460 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 6.1e-105 384.8 263 76.8
Os05g0119000 Oryza sativa ssp. japonica HOM05D005959 ORTHO05D007263 6.7e-104 381.3 258 77.1
Aa31LG5G22660 Aethionema arabicum HOM05D005959 ORTHO05D007263 4.4e-103 378.6 264 72.3
GSVIVG01025576001 Vitis vinifera HOM05D005959 ORTHO05D007263 2.2e-102 376.3 225 87.1
Cpa.g.sc114.24 Carica papaya HOM05D005959 ORTHO05D007263 1.1e-101 374.0 238 82.4
Hma1.2p1_0111F.1_g053390 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 1.3e-99 367.1 262 71.4
Eucgr.A01210 Eucalyptus grandis HOM05D005959 ORTHO05D007263 1.9e-98 363.2 265 72.1
Mapoly0099s0026 Marchantia polymorpha HOM05D005959 ORTHO05D007263 1.2e-97 360.5 276 69.2
AUR62041007 Chenopodium quinoa HOM05D005959 ORTHO05D007263 1.6e-97 360.1 265 74.3
Hma1.2p1_0111F.1_g053380 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 3.6e-97 359.0 262 70.6
Pp3c20_6820 Physcomitrium patens HOM05D005959 ORTHO05D007263 2.6e-95 352.8 255 72.2
AagrBONN_evm.TU.Sc2ySwM_344.2577 Anthoceros agrestis HOM05D005959 ORTHO05D007263 4.5e-92 342.0 264 68.2
COL.COLO4_10311 Corchorus olitorius HOM05D005959 ORTHO05D007263 1.2e-89 334.0 265 69.1
SMO271G0174 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 2.1e-89 333.2 258 67.4
Dinv35677 Davidia involucrata HOM05D005959 ORTHO05D007263 8.8e-88 327.8 187 91.4
SEGI_29713 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 7.5e-87 324.7 252 69.4
Actinidia05285 Actinidia chinensis HOM05D005959 ORTHO05D007263 1.7e-67 260.4 179 74.9
CBR_g49882 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-67 258.5 255 52.9
Nitab4.5_0002073g0040 Nicotiana tabacum HOM05D005959 ORTHO05D007263 1.2e-65 254.2 265 58.1
ClCG10G020740 Citrullus lanatus HOM05D005959 ORTHO05D007263 8.1e-65 251.5 151 86.8
Nn2g12822 Nelumbo nucifera HOM05D005959 ORTHO05D007263 2.3e-64 250.0 161 83.2
Actinidia11237 Actinidia chinensis HOM05D005959 ORTHO05D007263 3.5e-60 236.1 154 81.8
Actinidia19734 Actinidia chinensis HOM05D005959 ORTHO05D007263 3.5e-52 209.5 265 50.6
SMO364G0860 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 6.6e-51 205.3 245 44.9
CBR_g3295 Chara braunii HOM05D005959 ORTHO05D007263 4.9e-46 189.1 250 41.2
AagrBONN_evm.TU.Sc2ySwM_344.2052 Anthoceros agrestis HOM05D005959 ORTHO05D007263 5.3e-40 169.1 234 40.2
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.7e-35 154.1 98 77.6
Actinidia13264 Actinidia chinensis HOM05D005959 ORTHO05D007263 4.3e-34 149.4 96 81.2
AagrBONN_evm.TU.Sc2ySwM_344.389 Anthoceros agrestis HOM05D005959 ORTHO05D007263 5.6e-34 149.1 240 36.2
MD08G1090300 Malus domestica HOM05D005959 ORTHO05D007263 6.2e-33 145.6 118 70.3
Nn5g28122 Nelumbo nucifera HOM05D005959 ORTHO05D007263 1.5e-31 141.0 77 93.5
Nn1g07598 Nelumbo nucifera HOM05D005959 ORTHO05D007263 5.5e-29 132.5 75 89.3
Cre16.g673000 Chlamydomonas reinhardtii HOM05D005959 ORTHO05D007263 2.4e-24 117.1 233 36.1
TAR629G2669 Trochodendron aralioides HOM05D002023 ORTHO05D002049 4.5e-23 112.8 100 63.0
Oeu004323.1 Olea europaea HOM05D005959 ORTHO05D007263 3.9e-11 73.2 75 60.0


User provided reference genes

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