Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 3.1e-243 844.7 440 100.0
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.7e-220 769.2 443 90.5
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 5.4e-219 764.2 442 90.5
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.5e-218 761.5 442 90.0
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.9e-209 731.5 444 87.2
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.9e-200 702.6 404 90.6
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 9.9e-173 610.5 440 73.2
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-165 587.0 435 70.3
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.6e-162 576.6 441 68.9
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 3.5e-162 575.5 438 70.1
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 1.0e-161 573.9 433 70.2
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.9e-160 569.7 433 69.3
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 8.2e-159 564.3 453 67.5
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 8.2e-159 564.3 436 69.3
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 6.9e-158 561.2 433 68.4
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 1.5e-157 560.1 433 68.4
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.5e-155 552.7 439 67.4
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 3.2e-155 552.4 445 66.3
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.0e-153 547.4 435 67.6
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.0e-153 547.4 430 67.4
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 2.3e-153 546.2 437 67.0
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.4e-152 541.2 432 67.6
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 8.2e-151 537.7 441 64.6
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 3.1e-150 535.8 441 65.1
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 2.0e-149 533.1 442 64.0
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 5.0e-148 528.5 430 64.9
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 6.5e-148 528.1 442 64.7
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.4e-147 526.9 439 64.5
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.9e-147 526.6 431 66.4
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.5e-147 525.0 431 65.2
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.2e-146 523.9 441 63.9
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 2.1e-146 523.1 441 63.9
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.0e-145 520.8 439 63.8
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.8e-145 520.0 416 64.2
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.4e-144 515.4 442 61.8
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 7.4e-144 514.6 442 61.3
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.2e-143 513.1 442 61.5
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 8.2e-143 511.1 427 61.6
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.8e-142 510.0 407 63.1
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.4e-142 509.6 408 64.2
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 3.1e-142 509.2 408 64.0
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 3.1e-142 509.2 440 63.2
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 5.3e-142 508.4 451 61.6
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 9.1e-142 507.7 464 61.0
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.5e-141 506.9 427 63.2
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 2.6e-141 506.1 436 62.2
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 5.9e-141 505.0 438 61.9
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 7.7e-141 504.6 439 62.2
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.3e-140 503.8 517 56.3
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 1.3e-140 503.8 413 65.9
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 2.9e-140 502.7 428 64.3
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 6.5e-140 501.5 434 62.7
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 6.5e-140 501.5 434 62.7
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 8.5e-140 501.1 432 63.2
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 1.9e-139 500.0 433 61.9
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 5.5e-139 498.4 434 61.5
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.2e-138 497.3 433 62.1
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 2.7e-138 496.1 433 61.9
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 3.6e-138 495.7 414 63.3
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 4.7e-138 495.4 432 60.4
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 8.0e-138 494.6 432 60.9
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 1.8e-137 493.4 443 59.6
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 1.5e-136 490.3 432 61.1
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 3.3e-136 489.2 435 60.7
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 5.7e-136 488.4 430 60.5
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 7.4e-136 488.0 434 61.1
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 9.7e-136 487.6 437 59.5
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-135 487.3 437 62.2
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 1.3e-135 487.3 435 60.9
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.7e-135 486.9 415 61.4
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 2.2e-135 486.5 437 58.8
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 4.8e-135 485.3 435 60.7
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 6.3e-135 485.0 442 60.0
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 6.3e-135 485.0 435 61.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 8.2e-135 484.6 434 58.8
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 1.1e-134 484.2 434 60.8
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 1.1e-134 484.2 445 58.4
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.4e-134 483.8 435 58.9
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.4e-134 483.8 435 60.5
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 2.4e-134 483.0 434 60.8
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 4.1e-134 482.3 415 61.4
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 4.1e-134 482.3 433 60.7
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 5.3e-134 481.9 434 58.3
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 1.2e-133 480.7 373 67.0
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.6e-133 480.3 419 63.0
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 2.6e-133 479.6 410 60.0
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.6e-133 479.6 409 60.6
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 3.5e-133 479.2 434 59.4
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 4.5e-133 478.8 439 59.0
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.3e-132 477.2 365 65.2
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 2.9e-132 476.1 450 57.6
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 6.5e-132 474.9 410 61.2
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 8.5e-132 474.6 443 57.6
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 1.5e-131 473.8 436 58.3
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 3.6e-130 469.2 438 56.8
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 3.0e-129 466.1 436 59.2
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 2.6e-128 463.0 415 58.8
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 2.6e-128 463.0 436 57.3
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 9.7e-128 461.1 428 57.7
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 3.7e-127 459.1 429 57.1
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 6.3e-127 458.4 473 56.4
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 2.4e-126 456.4 410 57.8
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 5.3e-126 455.3 435 57.2
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 1.6e-125 453.8 440 57.5
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.5e-125 452.6 410 59.0
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.8e-124 449.1 411 58.9
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.2e-123 446.0 413 57.9
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 4.2e-123 445.7 434 56.0
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 7.2e-123 444.9 440 56.4
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 1.6e-122 443.7 408 59.1
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 6.8e-121 438.3 414 59.2
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.2e-119 433.3 430 53.5
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 1.9e-115 420.2 427 52.9
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.3e-115 419.5 432 54.2
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 5.5e-115 418.7 442 54.3
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.4e-113 414.1 438 54.8
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 2.0e-112 410.2 387 57.6
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 5.4e-110 402.1 521 47.2
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 7.8e-109 398.3 429 52.7
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 5.6e-107 392.1 313 65.8
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.0e-105 387.9 431 54.3
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 2.4e-94 350.1 320 62.2
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 7.1e-94 348.6 421 47.5
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 3.5e-93 346.3 277 63.2
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.7e-92 344.0 342 54.1
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 5.1e-92 342.4 309 59.9
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 9.5e-91 338.2 431 48.0
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 1.3e-84 317.8 434 43.8
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.7e-84 317.4 407 46.7
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 8.6e-84 315.1 278 59.0
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.6e-75 285.8 246 62.2
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.0e-68 263.5 318 47.5
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 6.2e-66 255.8 203 66.0
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.9e-65 252.3 411 41.6
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.3e-60 238.0 181 68.0
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 7.4e-59 232.3 185 65.4
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.4e-54 218.0 163 66.9
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 5.7e-51 206.1 183 59.0
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 4.8e-50 203.0 176 63.1
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.6e-48 197.2 161 67.1
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 3.5e-45 186.8 242 47.5
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.4e-40 170.2 147 66.0
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.0e-36 158.7 125 71.2
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.3e-36 157.5 140 56.4
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 9.7e-35 152.1 120 71.7
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 8.8e-28 129.0 82 79.3
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 3.1e-25 120.6 119 59.7
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.1e-19 102.1 92 57.6
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 3.7e-18 97.1 113 49.6
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.4e-17 95.1 80 65.0
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.7e-15 88.2 335 29.0
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.4e-12 78.6 431 23.4
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 2.4e-09 67.8 283 23.3
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 5.0e-07 60.1 55 50.9
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.5e-06 58.5 358 22.1
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 3.2e-06 57.4 189 25.9


User provided reference genes

Program Settings