Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 3.5e-242 841.3 439 100.0
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 9.2e-219 763.5 442 91.2
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.9e-217 758.4 441 90.9
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.5e-205 719.5 524 76.7
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 3.7e-196 688.3 434 80.4
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 3.9e-193 678.3 433 80.6
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.7e-188 662.9 433 79.2
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.7e-180 636.3 435 76.3
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 1.3e-177 626.7 435 76.1
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 3.6e-175 618.6 434 74.9
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 8.1e-175 617.5 450 73.6
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 8.1e-175 617.5 434 74.7
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.5e-173 611.7 429 75.8
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.7e-172 609.8 437 73.2
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 2.2e-172 609.4 434 73.0
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 6.4e-172 607.8 435 73.6
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.4e-171 606.7 429 72.7
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 3.5e-170 602.1 434 71.7
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 6.0e-170 601.3 417 74.1
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 3.3e-168 595.5 433 72.5
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 5.6e-168 594.7 434 71.7
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.4e-168 594.3 432 72.5
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.1e-167 592.8 433 71.8
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 6.2e-167 591.3 436 72.9
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.1e-166 590.5 429 74.4
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.3e-164 583.6 431 71.7
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 1.1e-163 580.5 436 70.6
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 3.5e-162 575.5 434 70.5
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 4.6e-162 575.1 430 71.2
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 2.3e-161 572.8 426 69.5
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 2.3e-161 572.8 436 69.0
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.7e-161 571.2 430 70.0
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.5e-160 569.3 431 70.5
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 5.6e-160 568.2 435 69.0
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 5.6e-160 568.2 431 70.3
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 7.4e-160 567.8 426 69.5
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 3.7e-159 565.5 431 69.1
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 3.7e-159 565.5 432 69.2
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 1.1e-158 563.9 424 69.8
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 4.0e-158 562.0 436 69.3
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 6.9e-158 561.2 436 68.1
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 6.9e-158 561.2 433 68.6
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 6.9e-158 561.2 433 67.4
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 9.0e-158 560.8 433 68.6
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 9.0e-158 560.8 443 66.1
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.5e-157 560.1 424 69.1
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 2.0e-157 559.7 426 68.1
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 5.8e-157 558.1 433 68.8
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 7.6e-157 557.8 433 68.1
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 7.6e-157 557.8 434 68.2
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.3e-156 557.0 442 67.6
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 2.2e-156 556.2 433 68.6
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 2.9e-156 555.8 429 69.5
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 6.5e-156 554.7 424 69.1
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 8.4e-156 554.3 424 68.9
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 1.4e-155 553.5 434 67.3
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 2.5e-155 552.7 434 68.4
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 3.2e-155 552.4 372 78.0
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 4.2e-155 552.0 436 67.9
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 4.2e-155 552.0 440 67.0
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.2e-154 550.4 429 68.1
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.2e-154 550.4 419 68.0
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 2.7e-154 549.3 430 66.7
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 3.5e-154 548.9 434 66.8
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 6.1e-154 548.1 438 67.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 6.1e-154 548.1 438 66.2
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.8e-153 546.6 434 67.7
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 2.3e-153 546.2 436 67.0
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 2.3e-153 546.2 433 67.0
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.0e-153 545.8 436 67.2
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 3.0e-153 545.8 435 66.9
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 5.1e-153 545.0 430 66.7
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 8.7e-153 544.3 434 67.5
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 1.5e-152 543.5 429 66.7
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 1.5e-152 543.5 426 65.3
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.3e-152 542.3 435 67.8
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 3.3e-152 542.3 430 66.3
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 9.7e-152 540.8 467 64.5
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.3e-151 540.4 425 66.8
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 6.3e-151 538.1 430 66.7
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 6.3e-151 538.1 430 66.7
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.4e-150 537.0 439 67.7
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 3.1e-150 535.8 429 66.4
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 4.1e-150 535.4 413 68.0
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.6e-149 532.7 439 63.3
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 4.5e-149 531.9 423 69.0
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.0e-148 530.8 431 64.5
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 3.8e-148 528.9 427 64.2
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 6.5e-148 528.1 437 63.8
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.1e-147 527.3 427 65.3
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 2.5e-147 526.2 444 61.7
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.2e-147 525.8 426 63.4
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 5.5e-147 525.0 436 63.5
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 2.1e-146 523.1 422 66.1
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.0e-145 520.8 437 64.8
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 1.8e-145 520.0 436 65.1
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 5.1e-145 518.5 430 64.2
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 1.1e-144 517.3 424 61.8
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.5e-144 516.9 438 65.8
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.5e-144 516.9 419 64.9
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 3.3e-144 515.8 434 64.3
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 4.3e-144 515.4 471 62.0
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.3e-143 513.8 434 64.1
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.7e-143 513.5 426 64.1
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 2.2e-143 513.1 424 65.1
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 8.2e-143 511.1 368 69.6
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 2.4e-142 509.6 418 63.4
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 6.9e-142 508.1 417 68.8
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 5.5e-139 498.4 432 59.7
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 1.8e-137 493.4 438 60.0
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.9e-137 492.3 405 62.7
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 1.1e-131 474.2 403 61.0
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 3.6e-130 469.2 433 58.2
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 6.1e-130 468.4 386 64.2
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.2e-125 454.1 432 58.8
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 2.2e-124 449.9 513 52.4
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.9e-124 449.5 433 61.0
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 3.2e-123 446.0 431 58.2
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 9.4e-123 444.5 422 56.9
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 5.2e-121 438.7 426 55.9
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 4.0e-113 412.5 313 70.6
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.3e-111 407.5 380 63.9
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.2e-109 401.0 300 70.0
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.4e-105 387.5 430 53.5
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 2.6e-104 383.3 298 64.8
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 5.7e-104 382.1 434 52.8
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 2.2e-103 380.2 345 59.1
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.0e-96 357.1 432 45.6
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 2.7e-93 346.7 428 45.1
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 6.0e-93 345.5 282 62.4
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.2e-81 305.8 250 65.2
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.4e-73 280.4 179 76.5
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.3e-71 274.6 424 45.0
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.2e-71 273.9 328 50.9
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 6.4e-71 272.3 181 74.6
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.5e-67 261.2 204 69.1
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 4.6e-61 239.6 175 68.6
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.6e-61 239.6 178 66.9
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.7e-52 208.8 161 72.0
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 8.7e-52 208.8 183 59.6
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.5e-43 181.4 147 70.7
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 1.9e-43 181.0 242 45.9
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.4e-41 174.1 139 58.3
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 1.5e-35 154.8 120 71.7
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 4.1e-33 146.7 115 67.0
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 5.9e-32 142.9 80 95.0
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.4e-28 131.7 90 70.0
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.8e-26 124.0 98 64.3
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.0e-23 113.2 104 65.4
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 8.8e-20 102.4 328 29.6
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.4e-17 94.4 113 46.9
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.4e-12 78.6 40 100.0
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.1e-11 75.5 376 23.7
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 1.4e-09 68.6 47 72.3
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 1.2e-08 65.5 405 22.7
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 4.5e-08 63.5 201 26.4
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 5.0e-07 60.1 194 26.3
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 6.5e-07 59.7 251 26.7
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 1.1e-06 58.9 195 25.1
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.9e-06 58.2 198 26.8
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.9e-06 58.2 195 25.6
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.5e-06 57.8 195 27.2
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 2.5e-06 57.8 194 25.8
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 3.2e-06 57.4 194 25.3
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.2e-06 57.4 194 26.3
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 3.2e-06 57.4 297 23.2
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 4.2e-06 57.0 198 27.3
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 7.2e-06 56.2 195 25.1


User provided reference genes

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