Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 2.0e-76 288.9 134 100.0
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 6.3e-70 267.3 133 93.2
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 1.4e-69 266.2 133 91.7
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.4e-69 266.2 133 91.7
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.1e-69 264.6 133 91.0
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.1e-69 264.6 133 91.0
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 4.1e-69 264.6 133 92.5
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 1.2e-68 263.1 133 91.7
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 1.2e-68 263.1 133 91.7
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 1.5e-68 262.7 133 91.7
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 2.6e-68 261.9 133 91.7
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 3.5e-68 261.5 133 90.2
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 3.5e-68 261.5 133 91.0
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 4.5e-68 261.2 133 91.7
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 5.9e-68 260.8 133 91.0
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 1.7e-67 259.2 133 90.2
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 2.2e-67 258.8 133 89.5
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 2.2e-67 258.8 133 89.5
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 2.2e-67 258.8 133 89.5
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 3.8e-67 258.1 133 89.5
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 3.8e-67 258.1 133 89.5
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 3.8e-67 258.1 133 89.5
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 3.8e-67 258.1 127 93.7
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 5.0e-67 257.7 133 89.5
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 5.0e-67 257.7 133 89.5
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 5.0e-67 257.7 133 89.5
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 5.0e-67 257.7 133 89.5
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 5.0e-67 257.7 133 88.7
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 6.5e-67 257.3 133 88.7
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 6.5e-67 257.3 133 88.7
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 6.5e-67 257.3 133 88.0
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.1e-66 256.5 133 88.7
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 1.1e-66 256.5 133 88.0
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 1.5e-66 256.1 133 88.0
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.5e-66 256.1 133 88.7
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 1.9e-66 255.8 133 87.2
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 1.9e-66 255.8 133 88.7
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 2.5e-66 255.4 133 88.0
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 2.5e-66 255.4 133 88.7
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 2.5e-66 255.4 133 88.7
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 2.5e-66 255.4 133 88.7
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 3.2e-66 255.0 133 88.7
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 3.2e-66 255.0 133 87.2
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 4.2e-66 254.6 133 87.2
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 7.2e-66 253.8 133 86.5
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 9.4e-66 253.4 133 87.2
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 9.4e-66 253.4 133 88.0
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 1.2e-65 253.1 133 88.0
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 1.2e-65 253.1 133 87.2
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 1.6e-65 252.7 133 88.7
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 3.6e-65 251.5 133 84.2
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 4.7e-65 251.1 133 85.7
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 4.7e-65 251.1 134 88.1
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 4.7e-65 251.1 133 85.7
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 6.1e-65 250.8 133 86.5
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 6.1e-65 250.8 130 88.5
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 6.1e-65 250.8 133 86.5
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 8.0e-65 250.4 133 85.0
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 1.0e-64 250.0 133 85.7
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 1.4e-64 249.6 133 86.5
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 1.4e-64 249.6 133 85.7
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.8e-64 249.2 133 85.7
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 1.8e-64 249.2 133 85.7
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.8e-64 249.2 133 86.5
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 3.0e-64 248.4 137 86.1
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 3.0e-64 248.4 133 87.2
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 4.0e-64 248.1 133 86.5
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.0e-64 248.1 134 87.3
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 4.0e-64 248.1 133 86.5
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 5.2e-64 247.7 133 85.0
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 5.2e-64 247.7 133 85.0
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 5.2e-64 247.7 133 85.0
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 6.7e-64 247.3 128 87.5
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 8.8e-64 246.9 133 83.5
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 1.1e-63 246.5 156 76.9
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 2.0e-63 245.7 133 82.7
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 2.0e-63 245.7 133 82.7
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 2.0e-63 245.7 133 82.7
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 2.0e-63 245.7 133 82.7
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 2.0e-63 245.7 133 82.7
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 3.3e-63 245.0 133 83.5
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 4.4e-63 244.6 133 82.0
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 7.4e-63 243.8 133 82.7
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 7.4e-63 243.8 132 82.6
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 7.4e-63 243.8 132 82.6
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 7.4e-63 243.8 133 81.2
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 9.7e-63 243.4 130 83.8
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 2.8e-62 241.9 132 82.6
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.7e-62 241.5 132 82.6
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 4.8e-62 241.1 130 83.1
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 8.2e-62 240.4 132 84.1
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 1.1e-61 240.0 149 77.2
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.4e-61 239.6 130 82.3
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 1.8e-61 239.2 130 83.1
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 3.1e-61 238.4 119 91.6
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 3.1e-61 238.4 121 89.3
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.6e-60 235.3 119 90.8
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 5.9e-60 234.2 126 86.5
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 2.2e-59 232.3 118 89.0
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 3.2e-58 228.4 118 88.1
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 3.2e-58 228.4 157 71.3
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 4.2e-58 228.0 121 85.1
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.7e-57 225.3 121 84.3
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 4.7e-57 224.6 133 74.4
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 2.3e-56 222.2 118 83.9
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 4.0e-56 221.5 119 86.6
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 6.3e-54 214.2 118 81.4
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 5.4e-53 211.1 117 81.2
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 1.2e-52 209.9 133 69.2
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 3.5e-52 208.4 152 63.2
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 1.7e-51 206.1 133 67.7
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.0e-48 195.3 134 72.4
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.0e-48 195.3 134 72.4
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 2.0e-47 192.6 133 63.9
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.5e-42 176.4 118 73.7
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 3.6e-41 171.8 89 91.0
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.0e-32 143.7 84 81.0
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.0e-19 100.5 55 83.6
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 1.3e-19 100.1 121 42.1
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 3.2e-13 79.0 38 92.1
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 5.4e-13 78.2 64 60.9
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 3.9e-11 72.0 103 35.9
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.5e-10 70.1 36 88.9


User provided reference genes

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