Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.1e-92 343.2 158 100.0
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.7e-61 239.6 144 79.9
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 1.7e-61 239.6 144 79.9
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 3.7e-61 238.4 153 75.8
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 1.8e-60 236.1 144 79.2
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 5.3e-60 234.6 144 78.5
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 5.3e-60 234.6 143 79.0
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 5.3e-60 234.6 144 78.5
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.2e-59 233.4 154 73.4
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 1.0e-58 230.3 146 76.0
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 1.7e-58 229.6 144 77.1
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.5e-58 227.6 123 84.6
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.5e-58 227.6 123 84.6
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.1e-57 226.9 144 76.4
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 1.1e-57 226.9 158 71.5
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 1.1e-57 226.9 144 75.7
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 1.5e-57 226.5 143 76.9
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 1.5e-57 226.5 144 75.7
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 2.5e-57 225.7 145 74.5
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 2.5e-57 225.7 158 70.3
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 4.2e-57 224.9 144 75.0
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 4.2e-57 224.9 158 70.9
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 4.2e-57 224.9 158 70.9
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 5.5e-57 224.6 146 74.7
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 5.5e-57 224.6 143 74.8
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 5.5e-57 224.6 153 71.2
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 7.2e-57 224.2 158 69.6
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 9.4e-57 223.8 143 75.5
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 9.4e-57 223.8 158 70.3
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 9.4e-57 223.8 143 75.5
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 1.2e-56 223.4 144 74.3
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 1.6e-56 223.0 144 75.0
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.6e-56 223.0 158 69.6
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 2.7e-56 222.2 158 69.0
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 2.7e-56 222.2 144 74.3
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.7e-56 222.2 143 74.8
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.7e-56 222.2 143 74.8
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 2.7e-56 222.2 144 74.3
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 3.6e-56 221.9 144 74.3
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 3.6e-56 221.9 158 67.7
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 3.6e-56 221.9 143 75.5
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 6.1e-56 221.1 157 69.4
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 6.1e-56 221.1 144 75.0
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 8.0e-56 220.7 144 73.6
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 8.0e-56 220.7 144 73.6
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 8.0e-56 220.7 144 72.9
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 1.0e-55 220.3 143 74.1
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 1.8e-55 219.5 144 73.6
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 1.8e-55 219.5 144 73.6
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 2.3e-55 219.2 144 73.6
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 2.3e-55 219.2 144 72.9
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 3.0e-55 218.8 144 73.6
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 3.0e-55 218.8 144 73.6
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 4.0e-55 218.4 144 73.6
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 4.0e-55 218.4 144 73.6
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 4.0e-55 218.4 143 74.1
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 4.0e-55 218.4 143 74.1
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 4.0e-55 218.4 143 74.1
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 4.0e-55 218.4 144 72.9
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 5.2e-55 218.0 144 72.2
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 5.2e-55 218.0 144 71.5
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 8.8e-55 217.2 143 72.7
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 8.8e-55 217.2 158 68.4
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 8.8e-55 217.2 158 68.4
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 8.8e-55 217.2 144 72.2
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 8.8e-55 217.2 145 73.8
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.1e-54 216.9 148 73.0
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 1.5e-54 216.5 167 64.7
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 1.5e-54 216.5 144 72.2
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 2.0e-54 216.1 146 72.6
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 2.6e-54 215.7 143 71.3
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.3e-54 215.3 144 72.2
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 3.3e-54 215.3 145 71.0
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 5.7e-54 214.5 143 72.0
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 5.7e-54 214.5 158 68.4
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 7.5e-54 214.2 159 65.4
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 7.5e-54 214.2 143 72.0
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.3e-53 213.4 143 70.6
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 1.3e-53 213.4 143 72.0
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 1.7e-53 213.0 143 72.0
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 1.7e-53 213.0 144 70.8
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.2e-53 212.6 143 71.3
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 2.8e-53 212.2 143 70.6
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 2.8e-53 212.2 144 72.2
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 3.7e-53 211.8 160 66.9
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 4.8e-53 211.5 158 64.6
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 6.3e-53 211.1 143 69.9
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 6.3e-53 211.1 143 69.9
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 6.3e-53 211.1 143 69.9
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 6.3e-53 211.1 143 69.9
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 6.3e-53 211.1 143 69.9
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 6.3e-53 211.1 143 69.9
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.1e-52 210.3 144 68.8
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 1.4e-52 209.9 143 69.2
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 1.4e-52 209.9 159 64.2
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 1.4e-52 209.9 143 69.2
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 1.4e-52 209.9 143 69.2
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 2.4e-52 209.1 144 68.1
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 5.3e-52 208.0 143 69.2
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 7.0e-52 207.6 142 69.0
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.2e-51 206.8 143 70.6
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 7.7e-51 204.1 142 67.6
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.5e-49 199.9 143 64.3
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 2.3e-47 192.6 167 59.9
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 6.8e-47 191.0 145 60.0
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 1.1e-44 183.7 143 57.3
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 2.7e-43 179.1 142 57.7
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-42 176.8 118 73.7
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 8.5e-42 174.1 142 57.7
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 1.1e-41 173.7 118 72.0
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 2.1e-40 169.5 118 69.5
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 4.1e-36 155.2 106 71.7
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.7e-34 149.8 106 67.9
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.8e-34 148.7 88 79.5
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 1.9e-33 146.4 106 67.0
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 6.4e-29 131.3 103 63.1
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 5.9e-27 124.8 88 71.6
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.3e-25 119.0 62 85.5
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 9.5e-17 90.9 45 86.7
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 4.9e-13 78.6 42 83.3
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 6.4e-13 78.2 44 84.1
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 4.1e-12 75.5 180 28.3
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 1.6e-11 73.6 38 84.2
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 7.3e-09 64.7 91 38.5


User provided reference genes

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