Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.0e-91 339.0 160 100.0
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 2.0e-78 295.8 143 98.6
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 5.7e-78 294.3 143 97.9
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 2.0e-75 285.8 143 94.4
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 2.0e-75 285.8 143 94.4
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.7e-75 285.4 143 95.1
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.9e-74 282.0 143 93.7
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 2.5e-73 278.9 143 90.9
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 9.5e-73 276.9 151 88.7
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 8.0e-72 273.9 143 88.8
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 5.2e-71 271.2 145 89.0
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 2.0e-67 259.2 143 82.5
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 2.0e-67 259.2 143 82.5
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 3.5e-67 258.5 143 83.9
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 3.5e-67 258.5 143 83.9
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 3.5e-67 258.5 143 81.8
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 2.3e-66 255.8 143 83.2
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 5.0e-66 254.6 143 81.8
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 5.0e-66 254.6 143 81.1
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 6.6e-66 254.2 143 81.1
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 8.6e-66 253.8 143 81.8
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.1e-65 253.4 143 80.4
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 1.1e-65 253.4 143 80.4
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 2.5e-65 252.3 143 79.7
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 3.3e-65 251.9 143 81.8
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 4.3e-65 251.5 143 79.7
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 5.6e-65 251.1 143 79.7
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 9.5e-65 250.4 142 83.1
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 1.2e-64 250.0 143 77.6
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 4.7e-64 248.1 149 76.5
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 6.2e-64 247.7 143 77.6
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 8.0e-64 247.3 142 81.0
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.1e-63 246.9 143 76.2
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.1e-63 246.9 143 76.2
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 1.4e-63 246.5 143 79.7
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 1.4e-63 246.5 143 79.7
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.4e-63 246.5 147 84.4
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 1.8e-63 246.1 143 76.2
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 3.1e-63 245.4 143 79.7
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 4.0e-63 245.0 143 76.2
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 5.2e-63 244.6 143 77.6
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 8.9e-63 243.8 143 76.9
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 1.5e-62 243.0 142 78.9
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 2.0e-62 242.7 142 79.6
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 2.0e-62 242.7 142 76.8
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.6e-62 242.3 143 77.6
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 2.6e-62 242.3 143 76.9
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 3.4e-62 241.9 142 79.6
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 3.4e-62 241.9 143 76.9
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.4e-62 241.9 143 77.6
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 4.4e-62 241.5 144 75.7
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 5.8e-62 241.1 142 76.8
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 5.8e-62 241.1 142 76.8
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 5.8e-62 241.1 143 76.9
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 5.8e-62 241.1 142 77.5
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 7.5e-62 240.7 142 75.4
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 1.3e-61 240.0 143 76.9
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.3e-61 240.0 143 76.9
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.7e-61 239.6 141 75.2
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.7e-61 239.6 143 76.2
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 3.7e-61 238.4 142 74.6
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 6.4e-61 237.7 143 75.5
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 8.3e-61 237.3 143 76.2
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.1e-60 236.9 143 76.2
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.1e-60 236.9 142 73.9
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.9e-60 236.1 143 75.5
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 1.9e-60 236.1 143 72.7
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 1.9e-60 236.1 143 75.5
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 2.4e-60 235.7 142 76.8
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 2.4e-60 235.7 142 76.1
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 3.2e-60 235.3 143 76.9
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 5.4e-60 234.6 143 72.0
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 7.0e-60 234.2 142 72.5
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 7.0e-60 234.2 142 74.6
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 9.2e-60 233.8 142 73.2
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 2.1e-59 232.6 143 74.8
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.1e-59 232.6 143 72.7
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 4.6e-59 231.5 143 74.8
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 4.6e-59 231.5 143 73.4
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 4.6e-59 231.5 142 72.5
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 7.8e-59 230.7 141 71.6
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 3.9e-58 228.4 142 73.2
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 5.1e-58 228.0 143 71.3
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 8.6e-58 227.3 143 71.3
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 8.6e-58 227.3 143 72.7
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.5e-57 226.5 143 72.0
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 3.3e-57 225.3 142 72.5
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 1.6e-56 223.0 143 71.3
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 1.6e-56 223.0 187 58.3
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 2.8e-56 222.2 143 70.6
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 3.6e-56 221.9 142 72.5
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 6.2e-56 221.1 142 71.8
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 8.1e-56 220.7 142 71.1
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 2.3e-55 219.2 142 71.1
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 3.1e-55 218.8 142 70.4
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 4.0e-55 218.4 147 70.1
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 5.2e-55 218.0 142 70.4
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 5.2e-55 218.0 130 75.4
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.2e-54 216.9 142 69.7
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 2.6e-54 215.7 146 69.2
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 3.4e-54 215.3 153 66.7
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 5.8e-54 214.5 142 69.7
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 5.8e-54 214.5 142 67.6
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 9.9e-54 213.8 142 69.7
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 9.9e-54 213.8 142 69.0
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 2.2e-53 212.6 142 71.1
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.2e-53 212.6 167 61.1
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 3.2e-52 208.8 142 65.5
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 9.2e-52 207.2 142 67.6
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 6.0e-51 204.5 131 71.0
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 5.1e-50 201.4 143 64.3
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 5.6e-49 198.0 105 86.7
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 7.3e-49 197.6 136 69.1
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 3.6e-48 195.3 143 64.3
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 4.4e-46 188.3 143 60.8
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 9.9e-46 187.2 143 63.6
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 9.6e-41 170.6 142 53.5
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 7.6e-38 161.0 142 53.5
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 6.4e-37 157.9 105 68.6
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.7e-34 149.8 105 65.7
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 9.6e-33 144.1 142 50.0
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 4.5e-30 135.2 152 41.4
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 2.4e-28 129.4 80 70.0
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 5.1e-26 121.7 80 66.2
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.1e-24 116.3 71 74.6
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.8e-18 96.7 52 80.8
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 4.8e-16 88.6 52 76.9
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.2e-14 84.0 52 73.1
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 9.7e-09 64.3 69 43.5


User provided reference genes

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