Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0462691 Rosa chinensis HOM05D007530 ORTHO05D009556 3.7e-29 131.0 70 100.0
FvH4_6g11210 Fragaria vesca HOM05D007530 ORTHO05D009556 4.5e-27 124.0 70 94.3
FAN09G3168 Fragaria x ananassa HOM05D007530 ORTHO05D009556 4.5e-27 124.0 70 94.3
FAN14G2496 Fragaria x ananassa HOM05D007530 ORTHO05D009556 4.5e-27 124.0 70 94.3
FAN14G3881 Fragaria x ananassa HOM05D007530 ORTHO05D009556 4.5e-27 124.0 70 94.3
FAN02G2108 Fragaria x ananassa HOM05D007530 ORTHO05D009556 5.9e-27 123.6 69 94.2
FAN05G2692 Fragaria x ananassa HOM05D007530 ORTHO05D009556 7.2e-25 116.7 65 93.8
Prupe.6G279800 Prunus persica HOM05D007530 ORTHO05D009556 1.5e-19 99.0 73 71.2
MD12G1171600 Malus domestica HOM05D007530 ORTHO05D009556 2.0e-19 98.6 70 71.4
ClCG10G022290 Citrullus lanatus HOM05D007530 ORTHO05D009556 2.2e-18 95.1 65 70.8
Gohir.A04G092400 Gossypium hirsutum HOM05D007530 ORTHO05D009556 2.9e-18 94.7 69 63.8
Gohir.D04G131700 Gossypium hirsutum HOM05D007530 ORTHO05D009556 2.9e-18 94.7 69 63.8
HanXRQChr10g0294071 Helianthus annuus HOM05D007530 ORTHO05D009556 3.8e-18 94.4 66 68.2
Duzib093G1475 Durio zibethinus HOM05D007530 ORTHO05D009556 5.0e-18 94.0 66 65.2
Gorai.012G115500 Gossypium raimondii HOM05D007530 ORTHO05D009556 5.0e-18 94.0 67 65.7
COL.COLO4_14508 Corchorus olitorius HOM05D002620 ORTHO05D006469 6.5e-18 93.6 67 67.2
CsaV3_3G033590 Cucumis sativus L. HOM05D007530 ORTHO05D009556 6.5e-18 93.6 62 74.2
SalBow4G2966 Salvia bowleyana HOM05D007530 ORTHO05D009556 6.5e-18 93.6 65 69.2
PSO384G0267 Papaver somniferum HOM05D007530 ORTHO05D009556 8.5e-18 93.2 68 67.6
Potri.006G101901 Populus trichocarpa HOM05D007530 ORTHO05D009556 8.5e-18 93.2 63 68.3
Sed0024664 Sechium edule HOM05D007530 ORTHO05D009556 1.1e-17 92.8 64 70.3
Potri.016G118800 Populus trichocarpa HOM05D007530 ORTHO05D009556 3.2e-17 91.3 64 67.2
PGSC0003DMG400011024 Solanum tuberosum HOM05D007530 ORTHO05D009556 3.2e-17 91.3 73 61.6
Sabra06G0078200 Salix brachista HOM05D007530 ORTHO05D009556 4.2e-17 90.9 66 65.2
Solyc10g085215.1 Solanum lycopersicum HOM05D007530 ORTHO05D009556 5.5e-17 90.5 73 63.0
MELO3C009149.2 Cucumis melo HOM05D007530 ORTHO05D009556 9.4e-17 89.7 62 69.4
Migut.L02025 Erythranthe guttata HOM05D007530 ORTHO05D009556 9.4e-17 89.7 67 61.2
Hma1.2p1_0362F.1_g136440 Hydrangea macrophylla HOM05D007530 ORTHO05D009556 9.4e-17 89.7 67 64.2
CANSAT35G1517 Cannabis sativa HOM05D007530 ORTHO05D009556 1.6e-16 89.0 64 65.6
Sopen10g034690 Solanum pennellii HOM05D007530 ORTHO05D009556 2.1e-16 88.6 67 61.2
Manes.08G093800 Manihot esculenta HOM05D007530 ORTHO05D009556 3.6e-16 87.8 64 62.5
CSS0025168 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 4.7e-16 87.4 66 63.6
PGR142G0763 Punica granatum HOM05D007530 ORTHO05D009556 4.7e-16 87.4 66 63.6
Duzib106G1059 Durio zibethinus HOM05D007530 ORTHO05D009556 6.1e-16 87.0 66 59.1
Glyma.16G098900 Glycine max HOM05D007530 ORTHO05D009556 8.0e-16 86.7 67 61.2
GSVIVG01011181001 Vitis vinifera HOM05D007530 ORTHO05D009556 8.0e-16 86.7 67 59.7
Glyma.18G203200 Glycine max HOM05D007530 ORTHO05D009556 1.0e-15 86.3 67 59.7
Lalb_Chr01g0023151 Lupinus albus HOM05D007530 ORTHO05D009556 1.0e-15 86.3 67 59.7
Manes.09G107300 Manihot esculenta HOM05D007530 ORTHO05D009556 1.0e-15 86.3 64 60.9
arahy.Tifrunner.gnm1.ann1.88RA0A Arachis hypogaea HOM05D007530 ORTHO05D009556 1.8e-15 85.5 65 61.5
ECA247G1901 Erigeron canadensis HOM05D007530 ORTHO05D009556 1.8e-15 85.5 66 60.6
Glyma.07G152100 Glycine max HOM05D007530 ORTHO05D009556 1.8e-15 85.5 67 61.2
Lalb_Chr19g0124461 Lupinus albus HOM05D007530 ORTHO05D009556 1.8e-15 85.5 63 63.5
Thecc.05G013400 Theobroma cacao HOM05D007530 ORTHO05D009556 1.8e-15 85.5 66 59.1
CiPaw.10G157500 Carya illinoinensis HOM05D007530 ORTHO05D009556 2.3e-15 85.1 64 62.5
Hund10987 Selenicereus undatus HOM05D007530 ORTHO05D009556 2.3e-15 85.1 65 61.5
THA.LOC109117252 Tarenaya hassleriana HOM05D007530 ORTHO05D009556 3.0e-15 84.7 60 66.7
Nn2g13162 Nelumbo nucifera HOM05D007530 ORTHO05D009556 6.7e-15 83.6 64 59.4
Nitab4.5_0003514g0010 Nicotiana tabacum HOM05D007530 ORTHO05D009556 6.7e-15 83.6 65 58.5
Phvul.008G096700 Phaseolus vulgaris HOM05D007530 ORTHO05D009556 6.7e-15 83.6 67 58.2
unitig_37.g12653 Utricularia gibba HOM05D007530 ORTHO05D009556 6.7e-15 83.6 67 61.2
Nitab4.5_0000770g0040 Nicotiana tabacum HOM05D007530 ORTHO05D009556 8.8e-15 83.2 67 55.2
MBI15_g24380_MAGBIO Magnolia biondii HOM05D007530 ORTHO05D009556 1.1e-14 82.8 64 59.4
Nitab4.5_0000444g0050 Nicotiana tabacum HOM05D007530 ORTHO05D009556 1.1e-14 82.8 65 58.5
Rhsim05G0217200 Rhododendron simsii HOM05D000043 ORTHO05D005398 1.1e-14 82.8 64 60.9
arahy.Tifrunner.gnm1.ann1.R0LR40 Arachis hypogaea HOM05D007530 ORTHO05D009556 2.0e-14 82.0 65 58.5
PGSC0003DMG400019174 Solanum tuberosum HOM05D007530 ORTHO05D009556 2.0e-14 82.0 67 56.7
TAR623G0260 Trochodendron aralioides HOM05D007530 ORTHO05D009556 2.0e-14 82.0 64 60.9
Thhalv10015199m.g Eutrema salsugineum HOM05D007530 ORTHO05D009556 2.6e-14 81.6 66 59.1
arahy.Tifrunner.gnm1.ann1.ZMF41F Arachis hypogaea HOM05D007530 ORTHO05D009556 3.3e-14 81.3 65 58.5
Carub.0006s0047 Capsella rubella HOM05D007530 ORTHO05D009556 3.3e-14 81.3 66 57.6
Haze_21023 Corylus avellana HOM05D002620 ORTHO05D006469 3.3e-14 81.3 87 54.0
Nitab4.5_0004107g0030 Nicotiana tabacum HOM05D007530 ORTHO05D009556 3.3e-14 81.3 67 53.7
Mapoly0015s0144 Marchantia polymorpha HOM05D007530 ORTHO05D009556 4.4e-14 80.9 77 61.0
EL10Ac5g12543 Beta vulgaris HOM05D007530 ORTHO05D009556 5.7e-14 80.5 65 55.4
Sp6g40660 Schrenkiella parvula HOM05D007530 ORTHO05D009556 7.4e-14 80.1 65 56.9
TWI74G1090 Tripterygium wilfordii HOM05D007530 ORTHO05D009556 9.7e-14 79.7 71 56.3
CARHR211730 Cardamine hirsuta HOM05D007530 ORTHO05D009556 1.3e-13 79.3 66 54.5
AT5G01350 Arabidopsis thaliana HOM05D007530 ORTHO05D009556 1.7e-13 79.0 66 54.5
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 1.7e-13 79.0 65 55.4
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 1.7e-13 79.0 65 55.4
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 1.7e-13 79.0 65 55.4
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 1.7e-13 79.0 65 55.4
Ca_07655_v3 Cicer arietinum L. HOM05D007530 ORTHO05D009556 2.2e-13 78.6 64 56.2
Medtr7g068940 Medicago truncatula HOM05D007530 ORTHO05D009556 2.2e-13 78.6 64 57.8
AL6G10780 Arabidopsis lyrata HOM05D007530 ORTHO05D009556 2.8e-13 78.2 66 54.5
BcaB01g06225 Brassica carinata HOM05D007530 ORTHO05D009556 3.7e-13 77.8 65 53.8
Aa31LG5G18900 Aethionema arabicum HOM05D007530 ORTHO05D009556 6.3e-13 77.0 63 54.0
Sc01g0006890 Simmondsia chinensis HOM05D007530 ORTHO05D009556 1.1e-12 76.3 70 57.1
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.4e-12 75.9 64 53.1
Aa31LG1G23010 Aethionema arabicum HOM05D007530 ORTHO05D009556 3.1e-12 74.7 63 55.6
Psat3g126880 Pisum sativum HOM05D007530 ORTHO05D009556 3.1e-12 74.7 70 54.3
Pp3c21_22550 Physcomitrium patens HOM05D007530 ORTHO05D009556 7.0e-12 73.6 64 59.4
Lsat_1_v5_gn_9_35161 Lactuca sativa HOM05D007530 ORTHO05D009556 1.2e-11 72.8 44 77.3
HPP92_021352 Vanilla planifolia HOM05D007530 ORTHO05D009556 4.5e-11 70.9 62 54.8
Cc06_g01140 Coffea canephora HOM05D007530 ORTHO05D009556 5.9e-11 70.5 45 71.1
Os04g0508100 Oryza sativa ssp. japonica HOM05D007530 ORTHO05D009556 7.7e-11 70.1 61 54.1
HPP92_021347 Vanilla planifolia HOM05D007530 ORTHO05D009556 1.3e-10 69.3 62 53.2
ATR0681G213 Amborella trichopoda HOM05D007530 ORTHO05D009556 2.2e-10 68.6 67 52.2
Aqoxy2G00850 Aquilegia oxysepala HOM05D007530 ORTHO05D009556 5.0e-10 67.4 63 50.8
TPR.G2527 Trifolium pratense HOM05D007530 ORTHO05D009556 6.5e-10 67.0 64 51.6
AagrBONN_evm.TU.Sc2ySwM_117.3278 Anthoceros agrestis HOM05D007530 ORTHO05D009556 2.5e-09 65.1 64 50.0
Eucgr.G03069 Eucalyptus grandis HOM05D007530 ORTHO05D009556 3.2e-09 64.7 44 65.9
Zm00001eb426270 Zea mays HOM05D007530 ORTHO05D009556 4.7e-08 60.8 58 50.0


User provided reference genes

Program Settings