Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0461641 Rosa chinensis HOM05D000413 ORTHO05D000292 6.0e-27 123.2 55 100.0
RcHm_v2.0_Chr7g0177951 Rosa chinensis HOM05D000413 ORTHO05D000292 1.1e-12 75.9 41 87.8
Prupe.5G237000 Prunus persica HOM05D000413 ORTHO05D000292 3.5e-11 70.9 41 82.9
FvH4_5g17700 Fragaria vesca HOM05D000413 ORTHO05D000292 1.3e-10 68.9 41 80.5
FAN18G2931 Fragaria x ananassa HOM05D000413 ORTHO05D000292 2.3e-10 68.2 35 85.7
FAN04G2454 Fragaria x ananassa HOM05D000413 ORTHO05D000292 1.5e-09 65.5 41 73.2
MD14G1239500 Malus domestica HOM05D000413 ORTHO05D000292 3.3e-09 64.3 40 75.0
Potri.012G043000 Populus trichocarpa HOM05D000413 ORTHO05D000292 4.8e-08 60.5 36 69.4
Sabra12G0030200 Salix brachista HOM05D000413 ORTHO05D000292 4.8e-08 60.5 36 69.4
Manes.06G002600 Manihot esculenta HOM05D000413 ORTHO05D000292 1.8e-07 58.5 47 55.3
Atru.chr9.1600 Acer truncatum HOM05D000413 ORTHO05D000292 3.1e-07 57.8 41 56.1
Atru.chr9.1601 Acer truncatum HOM05D000413 ORTHO05D000292 3.1e-07 57.8 40 60.0
Duzib068G0033 Durio zibethinus HOM05D000413 ORTHO05D000292 3.1e-07 57.8 36 66.7
Gohir.A03G091900 Gossypium hirsutum HOM05D000413 ORTHO05D000292 3.1e-07 57.8 47 55.3
Gorai.005G133600 Gossypium raimondii HOM05D000413 ORTHO05D000292 4.1e-07 57.4 47 55.3
CAN.G733.13 Capsicum annuum HOM05D000413 ORTHO05D000292 6.9e-07 56.6 48 52.1
FAN23G2115 Fragaria x ananassa HOM05D000413 ORTHO05D000292 9.0e-07 56.2 47 57.4
CsaV3_5G023870 Cucumis sativus L. HOM05D000413 ORTHO05D000292 1.2e-06 55.8 47 55.3
QL10p031609 Quercus lobata HOM05D000413 ORTHO05D000292 1.2e-06 55.8 48 58.3
VMungo0647G0308 Vigna mungo HOM05D000413 ORTHO05D000292 1.2e-06 55.8 47 53.2
MELO3C022820.2 Cucumis melo HOM05D000413 ORTHO05D000292 1.5e-06 55.5 47 55.3
Gohir.D02G120500 Gossypium hirsutum HOM05D000413 ORTHO05D000292 1.5e-06 55.5 47 53.2
Thecc.03G062600 Theobroma cacao HOM05D000413 ORTHO05D000292 1.5e-06 55.5 36 63.9
Phvul.008G238100 Phaseolus vulgaris HOM05D000413 ORTHO05D000292 2.0e-06 55.1 47 53.2
Sed0006277 Sechium edule HOM05D000413 ORTHO05D000292 2.0e-06 55.1 47 55.3
Ciclev10004424m.g Citrus clementina HOM05D000413 ORTHO05D000292 2.6e-06 54.7 47 53.2
Dinv07250 Davidia involucrata HOM05D000413 ORTHO05D000292 2.6e-06 54.7 48 54.2
CANSAT54G0971 Cannabis sativa HOM05D000413 ORTHO05D000292 3.4e-06 54.3 47 53.2
ClCG03G008880 Citrullus lanatus HOM05D000413 ORTHO05D000292 3.4e-06 54.3 47 53.2
FAN28G2689 Fragaria x ananassa HOM05D000413 ORTHO05D000292 3.4e-06 54.3 47 55.3
Glyma.14G212500 Glycine max HOM05D000413 ORTHO05D000292 4.5e-06 53.9 47 53.2
Psat2g046200 Pisum sativum HOM05D000413 ORTHO05D000292 4.5e-06 53.9 47 51.1
THA.LOC104820909 Tarenaya hassleriana HOM05D000413 ORTHO05D000292 4.5e-06 53.9 47 55.3
TPR.G9980 Trifolium pratense HOM05D000413 ORTHO05D000292 4.5e-06 53.9 47 51.1
TWI60G0747 Tripterygium wilfordii HOM05D000413 ORTHO05D000292 4.5e-06 53.9 41 58.5
TWI74G1250 Tripterygium wilfordii HOM05D000413 ORTHO05D000292 4.5e-06 53.9 47 53.2
Atru.chr1.1170 Acer truncatum HOM05D000413 ORTHO05D000292 5.9e-06 53.5 47 48.9
Atru.chr1.2020 Acer truncatum HOM05D000413 ORTHO05D000292 5.9e-06 53.5 47 48.9
CARHR076860 Cardamine hirsuta HOM05D000413 ORTHO05D000292 5.9e-06 53.5 47 53.2
Psat0s3343g0080 Pisum sativum HOM05D000413 ORTHO05D000292 5.9e-06 53.5 47 51.1
Actinidia06480 Actinidia chinensis HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 53.2
BcaB04g19382 Brassica carinata HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
BcaC01g04425 Brassica carinata HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
BcaC05g30501 Brassica carinata HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
BcaC05g30502 Brassica carinata HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
A03p33160 Brassica napus HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
A05p44260 Brassica napus HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
C03p40350 Brassica napus HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
C09p75980 Brassica napus HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
BolC3t16299H Brassica oleracea HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
BolC5t35059H Brassica oleracea HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
BraA03t12487Z Brassica rapa HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
BraA06t23282Z Brassica rapa HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
Dinv19052 Davidia involucrata HOM05D000413 ORTHO05D000292 7.7e-06 53.1 40 55.0
FvH4_1g30020 Fragaria vesca HOM05D000413 ORTHO05D000292 7.7e-06 53.1 40 60.0
FAN19G0916 Fragaria x ananassa HOM05D000413 ORTHO05D000292 7.7e-06 53.1 40 60.0
Glyma.02G243400 Glycine max HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 53.2
Nn4g24456 Nelumbo nucifera HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
Oeu035513.1 Olea europaea HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
Oeu035514.1 Olea europaea HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 51.1
RcHm_v2.0_Chr3g0492241 Rosa chinensis HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 53.2
Sed0005578 Sechium edule HOM05D000413 ORTHO05D000292 7.7e-06 53.1 47 53.2
Haze_18917 Corylus avellana HOM05D000413 ORTHO05D000292 1.0e-05 52.8 35 62.9
Manes.01G120800 Manihot esculenta HOM05D000413 ORTHO05D000292 1.0e-05 52.8 47 51.1
QL02p059600 Quercus lobata HOM05D000413 ORTHO05D000292 1.0e-05 52.8 47 53.2
TWI53G1749 Tripterygium wilfordii HOM05D000413 ORTHO05D000292 1.0e-05 52.8 47 51.1


User provided reference genes

Program Settings