Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0461401 Rosa chinensis HOM05D003281 ORTHO05D036628 5.0e-64 247.7 129 100.0
RcHm_v2.0_Chr3g0461421 Rosa chinensis HOM05D003281 ORTHO05D036628 5.0e-64 247.7 129 100.0
FvH4_7g04800 Fragaria vesca HOM05D003281 ORTHO05D004128 2.3e-21 105.9 121 55.4
FAN06G1854 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.3e-21 105.9 121 55.4
FAN06G3868 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.3e-21 105.9 121 55.4
FAN19G0112 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.3e-21 105.9 99 60.6
FvH4_1g24580 Fragaria vesca HOM05D003281 ORTHO05D004128 4.0e-21 105.1 99 60.6
FAN26G3221 Fragaria x ananassa HOM05D003281 ORTHO05D004128 6.8e-21 104.4 119 54.6
FAN15G0156 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.2e-20 103.6 108 56.5
FAN23G2047 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.2e-20 103.6 123 53.7
RcHm_v2.0_Chr2g0124681 Rosa chinensis HOM05D003281 ORTHO05D004128 2.7e-17 92.4 81 66.7
Prupe.5G007600 Prunus persica HOM05D003281 ORTHO05D004128 4.0e-13 78.6 85 51.8
MD12G1033700 Malus domestica HOM05D003281 ORTHO05D004128 2.2e-11 72.8 83 54.2
Glyma.11G158400 Glycine max HOM05D003281 ORTHO05D004128 1.1e-10 70.5 82 52.4
MD14G1035300 Malus domestica HOM05D003281 ORTHO05D004128 1.4e-10 70.1 75 56.0
Glyma.04G133100 Glycine max HOM05D003281 ORTHO05D004128 4.1e-10 68.6 126 42.9
Haze_06128 Corylus avellana HOM05D003281 ORTHO05D004128 7.0e-10 67.8 85 49.4
Manes.08G044300 Manihot esculenta HOM05D003281 ORTHO05D004128 7.0e-10 67.8 131 41.2
Thecc.02G006200 Theobroma cacao HOM05D003281 ORTHO05D004128 9.2e-10 67.4 87 47.1
Cfa000681 Carpinus fangiana HOM05D003281 ORTHO05D004128 1.6e-09 66.6 85 48.2
RcHm_v2.0_Chr1g0326741 Rosa chinensis HOM05D003281 ORTHO05D004128 2.7e-09 65.9 44 75.0
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 3.5e-09 65.5 76 51.3
GSVIVG01012120001 Vitis vinifera HOM05D003281 ORTHO05D004128 4.6e-09 65.1 59 55.9
COL.COLO4_17637 Corchorus olitorius HOM05D003281 ORTHO05D004128 6.0e-09 64.7 105 42.9
Phvul.005G018700 Phaseolus vulgaris HOM05D003281 ORTHO05D004128 6.0e-09 64.7 122 42.6
vmacro14666 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 6.0e-09 64.7 59 57.6
Potri.010G114400 Populus trichocarpa HOM05D003281 ORTHO05D004128 7.8e-09 64.3 76 50.0
Sed0004438 Sechium edule HOM05D003281 ORTHO05D004128 7.8e-09 64.3 83 49.4
TPR.G6549 Trifolium pratense HOM05D003281 ORTHO05D004128 7.8e-09 64.3 72 51.4
Medtr3g013710 Medicago truncatula HOM05D003281 ORTHO05D004128 1.0e-08 63.9 98 42.9
Nitab4.5_0006246g0040 Nicotiana tabacum HOM05D003281 ORTHO05D004128 1.0e-08 63.9 88 46.6
Zm00001eb070920 Zea mays HOM05D003281 ORTHO05D004128 1.0e-08 63.9 59 57.6
Cpa.g.c33226 Carica papaya HOM05D003281 ORTHO05D004128 1.3e-08 63.5 102 43.1
Nitab4.5_0000443g0070 Nicotiana tabacum HOM05D003281 ORTHO05D004128 1.3e-08 63.5 88 46.6
DCAR_001294 Daucus carota HOM05D003281 ORTHO05D004128 1.7e-08 63.2 74 50.0
TAR626G1141 Trochodendron aralioides HOM05D003281 ORTHO05D004128 2.3e-08 62.8 84 47.6
CiPaw.10G062800 Carya illinoinensis HOM05D003281 ORTHO05D004128 3.0e-08 62.4 84 47.6
Dinv01965 Davidia involucrata HOM05D003281 ORTHO05D004128 3.0e-08 62.4 86 46.5
Gohir.A12G048600 Gossypium hirsutum HOM05D003281 ORTHO05D004128 3.0e-08 62.4 127 40.9
Rhsim04G0089200 Rhododendron simsii HOM05D003281 ORTHO05D004128 3.0e-08 62.4 59 55.9
Dinv18011 Davidia involucrata HOM05D003281 ORTHO05D004128 3.9e-08 62.0 59 52.5
Rhsim01G0054700 Rhododendron simsii HOM05D003281 ORTHO05D004128 3.9e-08 62.0 59 54.2
Rhsim04G0114800 Rhododendron simsii HOM05D003281 ORTHO05D004128 3.9e-08 62.0 59 54.2
Duzib132G1085 Durio zibethinus HOM05D003281 ORTHO05D004128 6.6e-08 61.2 59 55.9
Gorai.002G136700 Gossypium raimondii HOM05D003281 ORTHO05D004128 6.6e-08 61.2 97 43.3
Rhsim04G0089900 Rhododendron simsii HOM05D003281 ORTHO05D004128 6.6e-08 61.2 59 54.2
CsaV3_1G010170 Cucumis sativus L. HOM05D003281 ORTHO05D004128 8.6e-08 60.8 78 50.0
PGR004G1969 Punica granatum HOM05D003281 ORTHO05D004128 8.6e-08 60.8 80 50.0
CSS0018694 Camellia sinensis var. sinensis HOM05D003281 ORTHO05D004128 1.1e-07 60.5 73 49.3
Medtr5g095820 Medicago truncatula HOM05D003281 ORTHO05D004128 1.1e-07 60.5 82 43.9
Os08g0206600 Oryza sativa ssp. japonica HOM05D003281 ORTHO05D004128 1.1e-07 60.5 98 42.9
VMungo1080G1879 Vigna mungo HOM05D003281 ORTHO05D004128 1.1e-07 60.5 113 43.4
ATR0150G008 Amborella trichopoda HOM05D003281 ORTHO05D004128 1.5e-07 60.1 71 52.1
arahy.Tifrunner.gnm1.ann1.D0LQY1 Arachis hypogaea HOM05D003281 ORTHO05D004128 1.5e-07 60.1 53 60.4
MSTRG.16470 Avicennia marina HOM05D003281 ORTHO05D004128 1.5e-07 60.1 54 59.3
MELO3C002406.2 Cucumis melo HOM05D003281 ORTHO05D004128 1.5e-07 60.1 76 50.0
Duzib248G1352 Durio zibethinus HOM05D003281 ORTHO05D004128 1.5e-07 60.1 59 55.9
Gohir.D01G111800 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.5e-07 60.1 97 43.3
QL11p013631 Quercus lobata HOM05D003281 ORTHO05D004128 1.5e-07 60.1 89 46.1
Actinidia11434 Actinidia chinensis HOM05D003281 ORTHO05D004128 1.9e-07 59.7 74 47.3
CARHR129210 Cardamine hirsuta HOM05D003281 ORTHO05D004128 1.9e-07 59.7 60 55.0
Lj3g0002589 Lotus japonicus HOM05D003281 ORTHO05D004128 1.9e-07 59.7 77 46.8
MBI14_g44727_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 2.5e-07 59.3 49 63.3
MD12G1089100 Malus domestica HOM05D003281 ORTHO05D036628 2.5e-07 59.3 39 76.9
TPR.G1398 Trifolium pratense HOM05D003281 ORTHO05D004128 2.5e-07 59.3 79 44.3
Sc26g0004530 Simmondsia chinensis HOM05D003281 ORTHO05D004128 3.3e-07 58.9 76 46.1
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 4.3e-07 58.5 92 39.1
AT2G35040 Arabidopsis thaliana HOM05D003281 ORTHO05D004128 4.3e-07 58.5 55 56.4
Nn7g38195 Nelumbo nucifera HOM05D003281 ORTHO05D004128 4.3e-07 58.5 79 46.8
arahy.Tifrunner.gnm1.ann1.F6IBWZ Arachis hypogaea HOM05D003281 ORTHO05D004128 5.6e-07 58.2 126 38.9
BcaB02g09485 Brassica carinata HOM05D003281 ORTHO05D004128 5.6e-07 58.2 59 54.2
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 5.6e-07 58.2 59 54.2
AUR62034379 Chenopodium quinoa HOM05D003281 ORTHO05D004128 5.6e-07 58.2 78 44.9
Ca_18076_v3 Cicer arietinum L. HOM05D003281 ORTHO05D004128 5.6e-07 58.2 81 44.4
Thhalv10016407m.g Eutrema salsugineum HOM05D003281 ORTHO05D004128 5.6e-07 58.2 51 60.8
THA.LOC104814352 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 5.6e-07 58.2 122 39.3
Eucgr.A00708 Eucalyptus grandis HOM05D003281 ORTHO05D004128 7.3e-07 57.8 81 45.7
Sopen08g023790 Solanum pennellii HOM05D003281 ORTHO05D004128 7.3e-07 57.8 59 54.2
AL4G31070 Arabidopsis lyrata HOM05D003281 ORTHO05D004128 9.5e-07 57.4 55 56.4
Carub.0004s1674 Capsella rubella HOM05D003281 ORTHO05D004128 9.5e-07 57.4 55 56.4
Gohir.D12G047400 Gossypium hirsutum HOM05D003281 ORTHO05D004128 9.5e-07 57.4 127 40.2
Solyc08g075160.3 Solanum lycopersicum HOM05D003281 ORTHO05D004128 9.5e-07 57.4 68 51.5
TWI34G0807 Tripterygium wilfordii HOM05D003281 ORTHO05D004128 9.5e-07 57.4 117 39.3
Gorai.008G050100 Gossypium raimondii HOM05D003281 ORTHO05D004128 1.2e-06 57.0 122 37.7
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 1.6e-06 56.6 59 52.5
PGSC0003DMG400020817 Solanum tuberosum HOM05D003281 ORTHO05D004128 1.6e-06 56.6 57 57.9
CANSAT56G2301 Cannabis sativa HOM05D003281 ORTHO05D004128 2.1e-06 56.2 74 47.3
CAN.G514.6 Capsicum annuum HOM05D003281 ORTHO05D004128 2.1e-06 56.2 50 60.0
Psat5g186600 Pisum sativum HOM05D003281 ORTHO05D004128 2.1e-06 56.2 104 37.5
SGA_v2.0_scaffold202G41492 Striga asiatica HOM05D003281 ORTHO05D004128 2.1e-06 56.2 59 55.9
Eucgr.A00733 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.8e-06 55.8 79 46.8
FAN01G0101 Fragaria x ananassa HOM05D003281 ORTHO05D004128 3.6e-06 55.5 122 37.7
Gohir.A01G124000 Gossypium hirsutum HOM05D003281 ORTHO05D004128 3.6e-06 55.5 127 35.4
Ah.01g022040 Amaranthus hybridus HOM05D003281 ORTHO05D004128 4.7e-06 55.1 113 38.1
CANSAT56G3182 Cannabis sativa HOM05D003281 ORTHO05D004128 4.7e-06 55.1 74 45.9
PSO017G0093 Papaver somniferum HOM05D003281 ORTHO05D004128 4.7e-06 55.1 59 50.8
PSO675G6428 Papaver somniferum HOM05D003281 ORTHO05D004128 4.7e-06 55.1 59 50.8
Pp3c4_1350 Physcomitrium patens HOM05D003281 ORTHO05D004128 4.7e-06 55.1 69 47.8
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 6.2e-06 54.7 119 34.5
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 6.2e-06 54.7 119 34.5
Psat5g222920 Pisum sativum HOM05D003281 ORTHO05D004128 6.2e-06 54.7 117 37.6
SGA_v2.0_scaffold254G45247 Striga asiatica HOM05D003281 ORTHO05D004128 6.2e-06 54.7 92 41.3
ClCG03G004230 Citrullus lanatus HOM05D003281 ORTHO05D004128 8.1e-06 54.3 79 48.1
Lalb_Chr07g0189731 Lupinus albus HOM05D003281 ORTHO05D004128 8.1e-06 54.3 61 50.8
SalBow1G7114 Salvia bowleyana HOM05D003281 ORTHO05D004128 8.1e-06 54.3 54 51.9


User provided reference genes

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