Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 2.1e-166 589.7 508 100.0
FAN09G0658 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.6e-110 404.1 525 70.7
FAN05G1111 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.4e-109 401.0 466 85.4
FAN14G4211 Fragaria x ananassa HOM05D006830 ORTHO05D008119 7.6e-108 395.2 508 80.7
FvH4_6g09531 Fragaria vesca HOM05D006830 ORTHO05D008119 3.2e-106 389.8 466 82.2
FAN02G1118 Fragaria x ananassa HOM05D006830 ORTHO05D008119 5.8e-92 342.4 466 78.8
Prupe.6G296200 Prunus persica HOM05D006830 ORTHO05D008119 1.1e-66 258.5 256 62.1
MD12G1191100 Malus domestica HOM05D006830 ORTHO05D008119 4.7e-65 253.1 255 61.6
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 1.7e-51 208.0 262 50.8
Haze_21197 Corylus avellana HOM05D006830 ORTHO05D008119 7.5e-47 192.6 268 48.1
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 1.3e-46 191.8 276 46.7
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 4.5e-44 183.3 258 46.9
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 2.2e-43 181.0 246 47.2
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 6.5e-43 179.5 263 46.0
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 9.4e-42 175.6 260 47.3
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 2.1e-41 174.5 255 47.8
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 2.7e-41 174.1 252 48.0
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 3.6e-41 173.7 259 45.6
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 1.0e-40 172.2 263 49.4
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 5.2e-40 169.9 259 44.4
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 4.4e-39 166.8 248 44.0
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 7.5e-39 166.0 260 45.4
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 3.7e-38 163.7 257 45.1
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 1.2e-36 158.7 235 48.1
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 2.7e-36 157.5 259 42.1
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 1.3e-35 155.2 262 44.3
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 2.9e-35 154.1 249 45.0
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 3.8e-35 153.7 262 41.2
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 8.6e-35 152.5 239 47.7
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 1.9e-34 151.4 267 42.3
Cpa.g.sc72.63 Carica papaya HOM05D006830 ORTHO05D008119 1.9e-34 151.4 241 44.8
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 1.9e-34 151.4 262 40.5
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 1.9e-34 151.4 241 46.5
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 1.9e-34 151.4 254 44.1
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 2.5e-34 151.0 267 43.4
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 4.2e-34 150.2 263 42.6
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 5.6e-34 149.8 261 43.7
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 5.6e-34 149.8 250 45.2
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 1.0e-32 145.6 262 40.8
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 1.0e-32 145.6 237 46.0
Thhalv10016585m.g Eutrema salsugineum HOM05D006830 ORTHO05D008119 8.9e-32 142.5 262 41.6
Glyma.18G216100 Glycine max HOM05D006830 ORTHO05D008119 2.6e-31 141.0 196 46.9
Ah.08g209170 Amaranthus hybridus HOM05D006830 ORTHO05D008119 5.7e-31 139.8 258 39.5
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 2.2e-30 137.9 293 36.2
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 2.9e-30 137.5 259 41.3
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 8.3e-30 136.0 262 40.8
Duzib268G1795 Durio zibethinus HOM05D006830 ORTHO05D008119 7.0e-29 132.9 208 46.2
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 9.2e-29 132.5 228 44.7
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 1.2e-28 132.1 279 37.3
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 2.7e-28 131.0 257 40.9
Sopen09g010200 Solanum pennellii HOM05D006830 ORTHO05D008119 2.7e-28 131.0 257 40.9
Sp4g20920 Schrenkiella parvula HOM05D006830 ORTHO05D008119 4.6e-28 130.2 262 38.2
Gohir.A09G213672 Gossypium hirsutum HOM05D006830 ORTHO05D008119 1.0e-27 129.0 221 45.7
ECA248G1589 Erigeron canadensis HOM05D006830 ORTHO05D008119 1.3e-27 128.6 258 37.6
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 1.3e-27 128.6 270 38.1
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 1.7e-27 128.3 257 38.1
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 1.7e-27 128.3 257 38.1
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 3.9e-27 127.1 257 38.1
Duzib151G0823 Durio zibethinus HOM05D006830 ORTHO05D008119 3.9e-27 127.1 209 46.4
Hund19745 Selenicereus undatus HOM05D006830 ORTHO05D008119 5.0e-27 126.7 186 45.7
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 8.6e-27 125.9 267 37.5
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 1.9e-26 124.8 222 41.9
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 2.5e-26 124.4 257 37.4
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 3.3e-26 124.0 263 39.5
CsaV3_3G032990 Cucumis sativus L. HOM05D006830 ORTHO05D008119 7.3e-26 122.9 268 38.1
MSTRG.18932 Avicennia marina HOM05D006830 ORTHO05D008119 1.2e-25 122.1 332 34.0
TPR.G24307 Trifolium pratense HOM05D006830 ORTHO05D008119 1.2e-25 122.1 211 41.2
Nitab4.5_0001876g0080 Nicotiana tabacum HOM05D006830 ORTHO05D008119 2.3e-24 117.9 278 36.0
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 2.3e-24 117.9 262 38.5
Migut.J00020 Erythranthe guttata HOM05D006830 ORTHO05D008119 8.9e-24 115.9 262 37.0
Peaxi162Scf00732g00253 Petunia axillaris HOM05D006830 ORTHO05D008119 1.2e-23 115.5 245 37.6
BcaC01g05528 Brassica carinata HOM05D006830 ORTHO05D008119 1.5e-23 115.2 250 36.8
Lalb_Chr01g0023901 Lupinus albus HOM05D006830 ORTHO05D008119 1.5e-23 115.2 216 43.5
MELO3C009096.2 Cucumis melo HOM05D006830 ORTHO05D008119 2.6e-23 114.4 280 36.8
Hund03691 Selenicereus undatus HOM05D006830 ORTHO05D008119 9.8e-23 112.5 217 41.0
VMungo1383G1745 Vigna mungo HOM05D006830 ORTHO05D008119 1.1e-21 109.0 264 36.7
THA.LOC104806205 Tarenaya hassleriana HOM05D006830 ORTHO05D008119 1.4e-21 108.6 257 33.5
AT2G38580 Arabidopsis thaliana HOM05D006830 ORTHO05D008119 4.1e-21 107.1 202 41.6
vmacro20384 Vaccinium macrocarpon HOM05D006830 ORTHO05D008119 1.2e-20 105.5 266 36.5
BcaB01g03674 Brassica carinata HOM05D006830 ORTHO05D008119 4.6e-20 103.6 260 34.2
CDE04G1359 Ceratophyllum demersum HOM05D006830 ORTHO05D008119 4.6e-20 103.6 257 34.6
AL4G35860 Arabidopsis lyrata HOM05D006830 ORTHO05D008119 1.7e-19 101.7 202 39.6
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 6.6e-19 99.8 276 32.6
DCAR_023967 Daucus carota HOM05D006830 ORTHO05D008119 6.6e-19 99.8 275 34.5
Ca_07782_v3 Cicer arietinum L. HOM05D006830 ORTHO05D008119 2.5e-18 97.8 203 36.9
CARHR133260 Cardamine hirsuta HOM05D006830 ORTHO05D008119 5.6e-18 96.7 224 37.5
ClCG10G022820 Citrullus lanatus HOM05D006830 ORTHO05D008119 9.5e-18 95.9 311 33.8
C03p25310 Brassica napus HOM05D006830 ORTHO05D008119 1.2e-17 95.5 257 32.7
HanXRQChr01g0000521 Helianthus annuus HOM05D006830 ORTHO05D008119 1.6e-17 95.1 215 38.6
PSO384G2539 Papaver somniferum HOM05D006830 ORTHO05D008119 1.6e-17 95.1 247 31.6
Phvul.008G080600 Phaseolus vulgaris HOM05D006830 ORTHO05D008119 4.7e-17 93.6 174 39.7
CSS0030660 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 6.2e-17 93.2 259 32.0
Sed0004389 Sechium edule HOM05D006830 ORTHO05D008119 1.2e-15 89.0 219 36.1
PSO339G2021 Papaver somniferum HOM05D006830 ORTHO05D008119 1.7e-14 85.1 171 34.5
CANSAT60G0001 Cannabis sativa HOM05D006830 ORTHO05D008119 9.2e-13 79.3 153 40.5
CANSAT21G1452 Cannabis sativa HOM05D006830 ORTHO05D008119 1.1e-10 72.4 259 29.7
CSS0037917 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 2.5e-10 71.2 259 29.3
unitig_22.g6617 Utricularia gibba HOM05D006830 ORTHO05D008119 1.6e-09 68.6 264 30.7
HPP92_012572 Vanilla planifolia HOM05D006830 ORTHO05D008119 8.1e-09 66.2 243 30.5
Zm00001eb015900 Zea mays HOM05D006830 ORTHO05D008119 2.3e-08 64.7 61 55.7
HPP92_012541 Vanilla planifolia HOM05D006830 ORTHO05D008119 3.1e-08 64.3 58 56.9
SEGI_40666 Sequoiadendron giganteum HOM05D006830 ORTHO05D008119 4.0e-08 63.9 298 27.9
BolC3t14925H Brassica oleracea HOM05D006830 ORTHO05D008119 5.2e-08 63.5 98 46.9
Lsat_1_v5_gn_5_151701 Lactuca sativa HOM05D006830 ORTHO05D008119 6.8e-08 63.2 77 51.9
Os03g0333000 Oryza sativa ssp. japonica HOM05D006830 ORTHO05D008119 7.6e-07 59.7 64 48.4
Aa31LG5G23390 Aethionema arabicum HOM05D006830 ORTHO05D008119 1.7e-06 58.5 78 44.9
Actinidia11494 Actinidia chinensis HOM05D040087 ORTHO05D008119 2.2e-06 58.2 94 45.7
ATR1127G221 Amborella trichopoda HOM05D006830 ORTHO05D008119 2.9e-06 57.8 346 25.7


User provided reference genes

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