Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.6e-61 239.2 119 100.0
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.5e-51 206.1 118 90.7
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 5.8e-51 204.1 109 96.3
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 5.6e-46 187.6 109 88.1
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.6e-46 187.6 109 88.1
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.2e-45 184.1 109 86.2
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.4e-42 174.1 103 85.4
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 6.7e-39 164.1 103 80.6
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 9.6e-38 160.2 109 74.3
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.0e-35 152.5 109 71.6
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 4.6e-32 141.4 110 64.5
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 3.0e-31 138.7 109 65.1
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 8.7e-31 137.1 105 66.7
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 3.3e-30 135.2 110 62.7
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.3e-29 133.3 109 64.2
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 8.2e-29 130.6 102 68.6
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 8.2e-29 130.6 102 68.6
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.8e-28 129.4 104 64.4
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 4.1e-28 128.3 109 60.6
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 3.4e-27 125.2 101 65.3
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 5.8e-27 124.4 109 60.6
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 7.6e-27 124.0 115 59.1
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.7e-26 122.9 101 60.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.9e-26 122.1 101 64.4
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.9e-26 122.1 105 60.0
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 3.8e-26 121.7 109 60.6
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.1e-25 120.2 101 62.4
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.9e-25 119.4 103 60.2
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.9e-25 119.4 110 56.4
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 5.5e-25 117.9 101 60.4
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 5.5e-25 117.9 109 61.5
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 5.5e-25 117.9 105 61.0
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 9.3e-25 117.1 101 64.4
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 9.3e-25 117.1 109 57.8
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.6e-24 116.3 109 58.7
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 2.1e-24 115.9 110 57.3
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.7e-24 115.5 109 56.9
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 2.7e-24 115.5 101 65.3
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 2.7e-24 115.5 109 60.6
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 2.7e-24 115.5 104 58.7
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 2.7e-24 115.5 101 61.4
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 6.1e-24 114.4 105 58.1
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 7.9e-24 114.0 104 61.5
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 7.9e-24 114.0 103 58.3
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.0e-23 113.6 110 59.1
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.0e-23 113.6 104 59.6
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.8e-23 112.8 110 58.2
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.8e-23 112.8 110 57.3
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 2.3e-23 112.5 101 65.3
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 2.3e-23 112.5 110 58.2
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 2.3e-23 112.5 103 60.2
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 2.3e-23 112.5 103 59.2
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.0e-23 112.1 104 58.7
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 3.0e-23 112.1 110 57.3
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 3.0e-23 112.1 104 58.7
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 3.0e-23 112.1 104 59.6
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 3.0e-23 112.1 104 58.7
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 3.9e-23 111.7 101 59.4
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 5.1e-23 111.3 110 57.3
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 5.1e-23 111.3 110 57.3
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.1e-22 110.2 93 63.4
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.1e-22 110.2 93 63.4
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.5e-22 109.8 110 56.4
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.5e-22 109.8 110 54.5
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.9e-22 109.4 104 59.6
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 2.5e-22 109.0 101 64.4
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 2.5e-22 109.0 102 61.8
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.5e-22 109.0 103 56.3
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.3e-22 108.6 109 54.1
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 5.7e-22 107.8 74 70.3
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 9.7e-22 107.1 88 64.8
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.3e-21 106.7 107 57.9
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.3e-21 106.7 110 54.5
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.6e-21 106.3 111 56.8
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.6e-21 106.3 111 56.8
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.6e-21 106.3 103 58.3
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 2.8e-21 105.5 110 53.6
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.8e-21 105.5 109 54.1
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 4.8e-21 104.8 103 54.4
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.3e-21 104.4 103 55.3
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 6.3e-21 104.4 109 53.2
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.1e-20 103.6 92 57.6
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.8e-20 102.8 104 56.7
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.8e-20 102.8 101 56.4
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.4e-20 102.4 102 53.9
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 3.1e-20 102.1 109 56.0
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 4.1e-20 101.7 92 57.6
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 4.1e-20 101.7 101 55.4
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 5.3e-20 101.3 102 57.8
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 6.9e-20 100.9 100 54.0
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 6.9e-20 100.9 104 52.9
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 9.0e-20 100.5 94 60.6
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 9.0e-20 100.5 110 51.8
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 9.0e-20 100.5 104 54.8
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 9.0e-20 100.5 97 59.8
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.2e-19 100.1 91 61.5
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.5e-19 99.8 94 60.6
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.0e-19 99.4 109 47.7
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.0e-19 99.4 106 55.7
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 2.6e-19 99.0 109 47.7
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.6e-19 99.0 109 47.7
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 3.4e-19 98.6 104 54.8
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 3.4e-19 98.6 104 52.9
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 3.4e-19 98.6 106 54.7
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 3.4e-19 98.6 109 50.5
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.5e-19 98.2 92 53.3
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 4.5e-19 98.2 109 47.7
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 5.9e-19 97.8 106 53.8
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 2.9e-18 95.5 97 57.7
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 3.8e-18 95.1 98 54.1
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 6.5e-18 94.4 103 49.5
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 6.5e-18 94.4 112 53.6
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 8.5e-18 94.0 104 49.0
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 8.5e-18 94.0 81 63.0
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.1e-17 93.6 109 46.8
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.1e-17 93.6 104 48.1
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.1e-17 93.6 105 51.4
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 2.7e-16 89.0 103 50.5
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 3.9e-15 85.1 84 56.0
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.1e-14 83.6 102 49.0
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 4.8e-13 78.2 103 39.8
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 3.1e-12 75.5 42 85.7
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.2e-11 73.6 108 46.3
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.6e-11 72.4 110 40.0
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 2.2e-10 69.3 46 71.7
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.8e-10 68.6 113 44.2
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.1e-08 62.8 103 44.7
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 4.7e-08 61.6 102 44.1
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 2.3e-07 59.3 48 60.4
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 3.9e-07 58.5 34 82.4
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 3.9e-07 58.5 34 82.4
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 3.9e-07 58.5 48 60.4
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 5.7e-06 54.7 58 44.8
COL.COLO4_08536 Corchorus olitorius HOM05D004172 ORTHO05D161792 9.7e-06 53.9 96 36.5


User provided reference genes

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