Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 2.1e-126 455.7 229 100.0
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 5.1e-104 381.3 230 86.5
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 5.1e-96 354.8 203 89.2
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 1.8e-88 329.7 207 83.6
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 1.4e-64 250.4 247 59.9
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 5.7e-63 245.0 249 60.6
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 3.7e-46 189.1 240 49.2
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 1.8e-45 186.8 239 47.7
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 4.1e-45 185.7 237 47.3
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 1.2e-44 184.1 245 49.4
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 5.9e-44 181.8 246 45.1
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 4.7e-41 172.2 232 47.8
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 4.0e-40 169.1 190 51.6
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 4.0e-40 169.1 190 51.6
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 5.2e-40 168.7 232 47.0
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 2.0e-39 166.8 218 47.7
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 2.6e-39 166.4 218 48.6
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 6.4e-38 161.8 201 51.7
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.1e-37 161.0 194 52.6
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 4.1e-37 159.1 219 47.5
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 6.0e-36 155.2 236 41.9
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 6.0e-36 155.2 229 44.5
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 1.7e-35 153.7 234 40.2
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 1.7e-35 153.7 245 41.2
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 7.3e-34 148.3 219 44.7
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 9.5e-34 147.9 240 42.9
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 4.7e-33 145.6 247 40.1
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 6.2e-33 145.2 247 40.5
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 8.0e-33 144.8 232 43.5
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 8.0e-33 144.8 195 46.2
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 4.0e-32 142.5 237 41.4
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 8.9e-32 141.4 193 45.1
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.2e-31 141.0 196 45.9
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 1.5e-31 140.6 194 47.9
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 1.5e-31 140.6 229 43.2
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 3.7e-30 136.0 193 40.4
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.1e-29 134.4 195 46.2
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.4e-29 134.0 195 46.2
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 1.4e-29 134.0 224 38.8
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 3.2e-29 132.9 220 43.6
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 1.6e-28 130.6 216 40.3
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 6.0e-28 128.6 142 49.3
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.3e-27 127.5 197 40.6
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.3e-27 127.5 197 40.6
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 2.3e-27 126.7 185 44.3
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 3.9e-27 125.9 226 41.2
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 3.9e-27 125.9 200 41.5
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 5.1e-27 125.6 196 42.3
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 6.6e-27 125.2 203 39.4
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 1.9e-26 123.6 203 40.4
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 3.3e-26 122.9 189 40.7
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 7.3e-26 121.7 205 41.5
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 1.2e-25 120.9 196 40.3
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 4.7e-25 119.0 234 38.0
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 4.7e-25 119.0 204 39.2
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 4.7e-25 119.0 178 45.5
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 8.1e-25 118.2 209 40.2
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 1.1e-24 117.9 205 37.6
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 1.4e-24 117.5 190 42.1
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 6.8e-24 115.2 195 40.0
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 4.4e-23 112.5 198 38.9
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 4.1e-21 105.9 219 39.3
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 7.1e-21 105.1 235 35.7
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 7.1e-21 105.1 195 39.0
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 2.1e-20 103.6 215 34.9
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 4.6e-20 102.4 193 35.2
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 6.6e-19 98.6 193 34.7
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 2.5e-18 96.7 247 33.2
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 1.2e-17 94.4 195 37.9
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 1.6e-17 94.0 256 32.4
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 4.7e-17 92.4 195 37.4
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 4.7e-17 92.4 162 37.7
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 1.8e-16 90.5 201 35.3
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 2.4e-16 90.1 189 37.6
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 3.1e-16 89.7 156 40.4
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 5.2e-16 89.0 235 32.3
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 3.4e-15 86.3 241 31.1
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 3.8e-14 82.8 212 30.7
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 6.4e-14 82.0 155 38.1
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 7.1e-13 78.6 197 29.9
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 9.3e-13 78.2 154 40.3
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.2e-12 77.8 190 31.6
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 2.7e-12 76.6 147 35.4
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 4.6e-12 75.9 151 36.4
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 1.3e-11 74.3 129 39.5
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.7e-11 73.9 183 31.7
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 2.3e-11 73.6 156 36.5
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 5.1e-11 72.4 220 32.7
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 6.6e-11 72.0 148 37.8
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.5e-10 70.9 146 35.6
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.5e-10 70.9 215 31.6
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 2.5e-10 70.1 152 34.9
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 3.3e-10 69.7 111 42.3
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 4.3e-10 69.3 191 30.9
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 7.3e-10 68.6 196 30.6
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.6e-09 67.4 156 30.1
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 2.1e-09 67.0 202 31.7
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 6.2e-09 65.5 183 32.2
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 1.4e-08 64.3 152 33.6
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 6.9e-08 62.0 132 39.4
AL4G21750 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 2.0e-07 60.5 148 35.1
A07p18870 Brassica napus HOM05D009615 ORTHO05D011760 2.0e-07 60.5 101 42.6
BolC4t23814H Brassica oleracea HOM05D009615 ORTHO05D011760 2.6e-07 60.1 105 38.1
Thhalv10017369m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 3.4e-07 59.7 81 48.1
CARHR121260 Cardamine hirsuta HOM05D009615 ORTHO05D011760 7.6e-07 58.5 152 30.9
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.7e-06 57.4 131 37.4
A07p18880 Brassica napus HOM05D009615 ORTHO05D011760 2.9e-06 56.6 94 39.4
BraA07t29594Z Brassica rapa HOM05D009615 ORTHO05D011760 2.9e-06 56.6 100 40.0
BraA07t29596Z Brassica rapa HOM05D009615 ORTHO05D011760 2.9e-06 56.6 94 39.4
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 8.4e-06 55.1 174 29.9


User provided reference genes

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